Wall clock time and date at job start Tue Mar 31 2020 20:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47389 * 2 1 4 4 H 1.08996 * 109.46942 * 54.99688 * 3 2 1 5 5 C 1.50696 * 109.47655 * 175.00202 * 3 2 1 6 6 H 1.07995 * 120.00026 * 119.99804 * 5 3 2 7 7 C 1.37882 * 119.99580 * 300.00275 * 5 3 2 8 8 N 1.31507 * 120.00054 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99588 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47191 * 60.00065 * 9 7 5 11 11 H 1.48501 * 109.46931 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47137 * 299.99704 * 9 7 5 13 13 N 1.46503 * 109.46932 * 295.00469 * 3 2 1 14 14 C 1.34778 * 120.00199 * 84.99696 * 13 3 2 15 15 O 1.21274 * 119.99916 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99834 * 179.97438 * 14 13 3 17 17 H 1.09006 * 109.49898 * 60.00248 * 16 14 13 18 18 C 1.53038 * 109.49456 * 180.02562 * 16 14 13 19 19 C 1.53042 * 109.53663 * 181.28625 * 18 16 14 20 20 C 1.53195 * 109.33671 * 298.67946 * 19 18 16 21 21 N 1.46925 * 108.77333 * 54.62362 * 20 19 18 22 22 C 1.34779 * 120.62749 * 126.41550 * 21 20 19 23 23 O 1.21589 * 119.99779 * 167.74421 * 22 21 20 24 24 N 1.34771 * 120.00139 * 347.73890 * 22 21 20 25 25 C 1.47022 * 125.65000 * 6.25498 * 24 22 21 26 26 C 1.54316 * 107.27714 * 180.96703 * 25 24 22 27 27 C 1.55154 * 102.86271 * 22.51964 * 26 25 24 28 28 C 1.47427 * 125.64689 * 186.55866 * 24 22 21 29 29 C 1.46924 * 118.73835 * 306.38689 * 21 20 19 30 30 H 1.09001 * 109.47355 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47035 * 299.99515 * 1 2 3 32 32 H 1.08999 * 109.47749 * 59.99948 * 1 2 3 33 33 H 1.09000 * 109.47324 * 240.00026 * 2 1 3 34 34 H 1.09000 * 109.47315 * 120.00365 * 2 1 3 35 35 H 0.97006 * 119.99804 * 180.02562 * 8 7 5 36 36 H 0.97003 * 119.99769 * 265.00024 * 13 3 2 37 37 H 1.09006 * 109.46098 * 301.33246 * 18 16 14 38 38 H 1.08995 * 109.46313 * 61.29777 * 18 16 14 39 39 H 1.09007 * 109.49632 * 178.71352 * 19 18 16 40 40 H 1.09001 * 109.47194 * 58.63149 * 19 18 16 41 41 H 1.08998 * 109.58559 * 294.83104 * 20 19 18 42 42 H 1.09006 * 109.70091 * 174.47741 * 20 19 18 43 43 H 1.09003 * 109.88077 * 300.50729 * 25 24 22 44 44 H 1.08993 * 109.88529 * 61.67172 * 25 24 22 45 45 H 1.09006 * 110.92091 * 264.10797 * 26 25 24 46 46 H 1.08999 * 110.59260 * 140.78447 * 26 25 24 47 47 H 1.09004 * 111.00713 * 206.22769 * 27 26 25 48 48 H 1.09008 * 110.99980 * 82.38389 * 27 26 25 49 49 H 1.09003 * 110.36297 * 274.67636 * 28 24 22 50 50 H 1.08994 * 110.37003 * 36.99698 * 28 24 22 51 51 H 1.09003 * 109.58949 * 293.82462 * 29 21 20 52 52 H 1.09002 * 109.70518 * 173.46924 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1432 0.8784 1.2279 8 7 3.4062 0.3374 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5004 2.2799 1.3807 11 1 6.3978 0.2167 2.6503 12 1 6.5966 0.1453 0.2342 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3396 2.6319 -0.4344 16 6 0.0366 3.3386 -2.6544 17 1 0.0677 2.6149 -3.4689 18 6 -1.3826 3.8958 -2.5212 19 6 -1.8003 4.5526 -3.8389 20 6 -0.8513 5.7144 -4.1497 21 7 0.5298 5.2132 -4.1366 22 6 1.3442 5.4168 -5.1910 23 8 2.5364 5.2012 -5.0888 24 7 0.8370 5.8593 -6.3586 25 6 -0.5531 6.2815 -6.5839 26 6 -0.6756 6.6816 -8.0692 27 6 0.5024 5.9187 -8.7307 28 6 1.5829 5.9941 -7.6232 29 6 1.0064 4.4866 -2.9519 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8293 -0.0604 2.9502 36 1 2.2718 2.1231 -1.9978 37 1 -2.0708 3.0839 -2.2855 38 1 -1.4083 4.6369 -1.7224 39 1 -2.8195 4.9290 -3.7507 40 1 -1.7515 3.8179 -4.6426 41 1 -0.9653 6.4915 -3.3941 42 1 -1.0819 6.1242 -5.1331 43 1 -1.2313 5.4572 -6.3630 44 1 -0.7879 7.1372 -5.9509 45 1 -0.5564 7.7579 -8.1936 46 1 -1.6293 6.3483 -8.4786 47 1 0.8358 6.4246 -9.6369 48 1 0.2294 4.8845 -8.9405 49 1 2.0972 6.9544 -7.6597 50 1 2.2956 5.1767 -7.7323 51 1 1.0439 5.1636 -2.0984 52 1 2.0012 4.0842 -3.1430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183841719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:36 Heat of formation + Delta-G solvation = -53.003133 kcal Electronic energy + Delta-G solvation = -30953.941887 eV Core-core repulsion = 26953.711380 eV Total energy + Delta-G solvation = -4000.230506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.02803 -40.86966 -38.78646 -38.20481 -36.91129 -34.44781 -34.18433 -33.09502 -32.42673 -31.81886 -30.05139 -28.89350 -26.86705 -25.60560 -24.68469 -23.83941 -22.48054 -22.24097 -21.51132 -21.04128 -20.54087 -19.08749 -18.19410 -17.61269 -17.34881 -17.28900 -16.98739 -16.63149 -16.20735 -15.83185 -15.54188 -15.30739 -14.91882 -14.81119 -14.61205 -14.57481 -14.38590 -13.94818 -13.77181 -13.70683 -13.59108 -13.36537 -13.22639 -13.15776 -12.93751 -12.69756 -12.56138 -12.44406 -12.19999 -12.10638 -12.06230 -11.97772 -11.66295 -11.60022 -11.54328 -11.44981 -11.08299 -10.78784 -10.59309 -10.47745 -10.02357 -9.64533 -9.35684 -8.18479 -6.35384 1.37406 1.41694 1.43265 1.51105 1.82491 2.02272 2.33954 2.59900 2.75940 3.10424 3.56906 3.62435 3.74943 3.79130 3.82330 4.02848 4.10247 4.16774 4.27488 4.28981 4.41879 4.46338 4.47749 4.50086 4.56101 4.63719 4.71857 4.74248 4.78067 4.87435 4.92939 4.96613 5.02082 5.03436 5.05163 5.16426 5.18919 5.24354 5.28539 5.38796 5.39740 5.42732 5.47713 5.54431 5.60653 5.77813 5.90279 5.93929 6.15574 6.72145 6.84695 6.95508 7.31046 7.41590 7.53797 8.86509 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.002893 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.739463 B = 9674.860789 C =10991.091552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.551 4.551 6 H 0.064 0.936 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.966 3.034 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.267 1.267 13 N -0.707 5.707 14 C 0.506 3.494 15 O -0.578 6.578 16 C -0.106 4.106 17 H 0.105 0.895 18 C -0.095 4.095 19 C -0.121 4.121 20 C 0.031 3.969 21 N -0.619 5.619 22 C 0.715 3.285 23 O -0.636 6.636 24 N -0.637 5.637 25 C 0.078 3.922 26 C -0.125 4.125 27 C -0.124 4.124 28 C 0.114 3.886 29 C 0.150 3.850 30 H 0.046 0.954 31 H 0.027 0.973 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.266 0.734 36 H 0.398 0.602 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.167 0.833 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.077 0.923 49 H 0.066 0.934 50 H 0.055 0.945 51 H 0.059 0.941 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.424 13.535 -24.531 31.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.018 0.982 5 C -0.590 4.590 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.791 3.209 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.191 1.191 13 N -0.355 5.355 14 C 0.292 3.708 15 O -0.459 6.459 16 C -0.129 4.129 17 H 0.123 0.877 18 C -0.133 4.133 19 C -0.159 4.159 20 C -0.088 4.088 21 N -0.355 5.355 22 C 0.418 3.582 23 O -0.518 6.518 24 N -0.375 5.375 25 C -0.043 4.043 26 C -0.162 4.162 27 C -0.162 4.162 28 C -0.008 4.008 29 C 0.025 3.975 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.232 0.768 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.126 0.874 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.183 0.817 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.095 0.905 49 H 0.084 0.916 50 H 0.073 0.927 51 H 0.078 0.922 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.277 13.279 -23.544 30.116 hybrid contribution 1.668 -0.399 0.857 1.917 sum -11.609 12.880 -22.688 28.555 Atomic orbital electron populations 1.21659 0.96698 0.99200 1.00306 1.21778 0.93998 0.99044 1.01183 1.18356 0.93419 0.89282 0.81364 0.98153 1.21543 0.91693 1.39061 1.06657 0.91744 1.25709 1.03129 0.94333 0.94984 1.70025 1.37006 1.38246 1.09771 0.85491 0.79393 0.78387 0.77642 1.19926 1.20708 1.19141 1.46396 1.15661 1.55984 1.17491 1.20889 0.81654 0.78475 0.89790 1.90643 1.52156 1.61170 1.41926 1.21652 0.98555 0.97761 0.94918 0.87742 1.21302 0.92699 1.00495 0.98832 1.21902 1.00279 0.97647 0.96077 1.23885 0.78959 0.97223 1.08738 1.47082 1.14001 1.58962 1.15417 1.15676 0.84077 0.78148 0.80253 1.90906 1.15809 1.61278 1.83804 1.47628 1.13043 1.68649 1.08171 1.22691 0.82160 1.00540 0.98863 1.22762 1.00071 1.01670 0.91742 1.22789 0.94328 1.02081 0.97018 1.22267 0.95598 1.01254 0.81718 1.21109 0.97014 0.92395 0.86974 0.93506 0.95380 0.93756 0.94370 0.90934 0.92506 0.76792 0.91600 0.92383 0.87397 0.90844 0.91444 0.81697 0.88887 0.88818 0.89195 0.87411 0.87701 0.90471 0.91584 0.92653 0.92219 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.51 71.98 0.61 -4.94 16 2 C -0.12 -6.15 5.45 30.59 0.17 -5.98 16 3 C 0.28 14.84 2.24 44.24 0.10 14.94 16 4 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 5 C -0.55 -30.64 8.73 25.60 0.22 -30.41 16 6 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.05 5.29 84.66 0.45 1.50 16 8 N -0.91 -53.39 11.29 21.45 0.24 -53.15 16 9 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 13 N -0.71 -30.93 4.93 -446.11 -2.20 -33.12 16 14 C 0.51 20.34 5.73 87.66 0.50 20.84 16 15 O -0.58 -27.21 13.12 -3.01 -0.04 -27.25 16 16 C -0.11 -3.14 2.67 -11.46 -0.03 -3.17 16 17 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 18 C -0.10 -2.32 4.46 30.62 0.14 -2.18 16 19 C -0.12 -1.78 5.93 30.67 0.18 -1.60 16 20 C 0.03 0.48 5.62 86.36 0.49 0.97 16 21 N -0.62 -15.27 2.97 -836.90 -2.49 -17.76 16 22 C 0.72 20.20 8.32 179.06 1.49 21.69 16 23 O -0.64 -24.45 16.17 -4.00 -0.06 -24.52 16 24 N -0.64 -11.98 3.33 -989.46 -3.29 -15.28 16 25 C 0.08 0.66 4.85 86.73 0.42 1.08 16 26 C -0.12 -0.43 6.95 31.78 0.22 -0.21 16 27 C -0.12 -0.84 7.08 31.98 0.23 -0.61 16 28 C 0.11 1.79 6.89 86.85 0.60 2.39 16 29 C 0.15 4.52 5.53 86.36 0.48 4.99 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.03 1.37 7.85 -2.39 -0.02 1.35 16 32 H 0.04 1.94 5.64 -2.39 -0.01 1.93 16 33 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 4.10 5.95 -2.39 -0.01 4.08 16 35 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 36 H 0.40 15.87 8.08 -92.71 -0.75 15.13 16 37 H 0.07 1.72 8.07 -2.38 -0.02 1.70 16 38 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 39 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.17 1.55 1.53 -57.60 -0.09 1.46 16 43 H 0.09 0.60 6.60 -2.39 -0.02 0.58 16 44 H 0.09 0.57 6.74 -2.39 -0.02 0.56 16 45 H 0.09 0.17 8.14 -2.38 -0.02 0.15 16 46 H 0.11 -0.05 8.14 -2.39 -0.02 -0.06 16 47 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 48 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 51 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 52 H 0.08 2.63 6.73 -2.39 -0.02 2.62 16 Total: -1.00 -77.92 391.66 0.53 -77.39 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.09 Total: 28.36 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 6.26 Total: 19.30 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -7.73 Total: -119.31 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.10 Total: -51.77 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -77.92 0.53 -77.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183841719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.383 kcal (2) G-P(sol) polarization free energy of solvation -77.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds