Wall clock time and date at job start Tue Mar 31 2020 20:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47254 * 2 1 4 4 H 1.08998 * 109.46944 * 62.22994 * 3 2 1 5 5 C 1.50696 * 109.47231 * 182.23154 * 3 2 1 6 6 H 1.07997 * 119.99969 * 114.60596 * 5 3 2 7 7 C 1.37885 * 120.00001 * 294.60222 * 5 3 2 8 8 N 1.31510 * 119.99696 * 158.24817 * 7 5 3 9 9 Si 1.86801 * 119.99918 * 338.25370 * 7 5 3 10 10 H 1.48503 * 109.46950 * 269.99709 * 9 7 5 11 11 H 1.48497 * 109.47155 * 29.99813 * 9 7 5 12 12 H 1.48500 * 109.47146 * 149.99933 * 9 7 5 13 13 N 1.46504 * 109.47302 * 302.23405 * 3 2 1 14 14 C 1.34778 * 120.00124 * 84.99762 * 13 3 2 15 15 O 1.21281 * 120.00092 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00102 * 179.97438 * 14 13 3 17 17 C 1.53040 * 109.45946 * 300.07296 * 16 14 13 18 18 C 1.53189 * 109.31425 * 178.61517 * 17 16 14 19 19 N 1.46923 * 108.77809 * 54.62869 * 18 17 16 20 20 C 1.34776 * 120.63072 * 126.37364 * 19 18 17 21 21 O 1.21584 * 120.00037 * 353.82700 * 20 19 18 22 22 N 1.34778 * 119.99821 * 173.83261 * 20 19 18 23 23 C 1.47017 * 125.65012 * 6.87978 * 22 20 19 24 24 C 1.54322 * 107.27806 * 180.97153 * 23 22 20 25 25 C 1.55154 * 102.86020 * 22.52678 * 24 23 22 26 26 C 1.47431 * 125.64679 * 187.19300 * 22 20 19 27 27 C 1.46927 * 118.73972 * 306.39680 * 19 18 17 28 28 C 1.53034 * 109.46359 * 180.02562 * 16 14 13 29 29 H 1.09005 * 109.47138 * 299.99975 * 1 2 3 30 30 H 1.09008 * 109.46952 * 59.99329 * 1 2 3 31 31 H 1.08991 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46624 * 240.00324 * 2 1 3 33 33 H 1.09000 * 109.47242 * 120.00600 * 2 1 3 34 34 H 0.97000 * 120.00354 * 354.94064 * 8 7 5 35 35 H 0.97001 * 119.99471 * 264.99581 * 13 3 2 36 36 H 1.08999 * 109.45751 * 60.02827 * 16 14 13 37 37 H 1.09004 * 109.49535 * 298.56132 * 17 16 14 38 38 H 1.08996 * 109.50395 * 58.65761 * 17 16 14 39 39 H 1.09004 * 109.58386 * 294.84365 * 18 17 16 40 40 H 1.09000 * 109.59354 * 174.42220 * 18 17 16 41 41 H 1.08998 * 109.89039 * 300.51659 * 23 22 20 42 42 H 1.08998 * 109.88402 * 61.68488 * 23 22 20 43 43 H 1.09002 * 110.92407 * 264.11651 * 24 23 22 44 44 H 1.08994 * 110.59319 * 140.78831 * 24 23 22 45 45 H 1.09001 * 111.00718 * 206.22879 * 25 24 23 46 46 H 1.09001 * 111.00440 * 82.37800 * 25 24 23 47 47 H 1.08994 * 110.36666 * 274.67260 * 26 22 20 48 48 H 1.08998 * 110.36269 * 36.99377 * 26 22 20 49 49 H 1.09001 * 109.58667 * 293.81518 * 27 19 18 50 50 H 1.08999 * 109.59022 * 173.39816 * 27 19 18 51 51 H 1.09001 * 109.49805 * 301.33930 * 28 16 14 52 52 H 1.08998 * 109.49897 * 61.40184 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7097 1.9446 0.9093 5 6 3.5460 1.4428 -0.0553 6 1 4.0545 1.8434 -0.9198 7 6 4.2747 0.9318 0.9978 8 7 5.5135 0.5333 0.8081 9 14 3.5021 0.8054 2.6939 10 1 3.7580 2.0583 3.4489 11 1 2.0378 0.6003 2.5568 12 1 4.0966 -0.3428 3.4243 13 7 1.5083 2.1485 -1.1684 14 6 0.2873 2.7167 -1.1143 15 8 -0.3710 2.6440 -0.0983 16 6 -0.2594 3.4435 -2.3159 17 6 0.6731 4.6012 -2.6794 18 6 0.1327 5.3162 -3.9218 19 7 -1.2578 5.7179 -3.6689 20 6 -1.6447 6.9976 -3.8395 21 8 -0.8198 7.8530 -4.0965 22 7 -2.9461 7.3290 -3.7253 23 6 -4.0230 6.4319 -3.2813 24 6 -5.3393 7.2359 -3.3320 25 6 -5.0161 8.3641 -4.3468 26 6 -3.5266 8.6493 -4.0310 27 6 -2.2183 4.6981 -3.2260 28 6 -1.6513 3.9906 -1.9912 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.8905 0.5300 -0.0856 35 1 2.0350 2.2070 -1.9808 36 1 -0.3271 2.7540 -3.1575 37 1 0.7219 5.3040 -1.8476 38 1 1.6703 4.2136 -2.8877 39 1 0.1682 4.6407 -4.7765 40 1 0.7368 6.2000 -4.1266 41 1 -4.0865 5.5711 -3.9469 42 1 -3.8324 6.1007 -2.2606 43 1 -5.5781 7.6537 -2.3539 44 1 -6.1557 6.6121 -3.6958 45 1 -5.6305 9.2450 -4.1606 46 1 -5.1380 8.0142 -5.3719 47 1 -3.4415 9.3100 -3.1683 48 1 -3.0326 9.0894 -4.8972 49 1 -2.3746 3.9722 -4.0240 50 1 -3.1654 5.1740 -2.9717 51 1 -2.3088 3.1682 -1.7095 52 1 -1.5803 4.6988 -1.1657 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183936123.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:26 Heat of formation + Delta-G solvation = -31.060707 kcal Electronic energy + Delta-G solvation = -30773.688952 eV Core-core repulsion = 26774.409940 eV Total energy + Delta-G solvation = -3999.279011 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.11875 -39.57867 -38.03853 -37.08524 -35.23447 -33.48563 -32.39863 -31.88308 -31.40207 -30.90145 -29.34610 -27.48104 -26.19592 -23.63639 -23.50275 -22.35870 -21.70768 -21.35939 -20.43401 -19.71569 -19.37311 -17.80547 -17.38410 -16.99507 -16.52975 -16.08824 -15.53838 -15.22319 -14.86908 -14.74636 -14.37992 -14.07197 -13.94180 -13.74738 -13.48699 -13.31557 -13.29588 -13.07162 -12.81162 -12.60509 -12.51696 -12.32956 -12.07945 -11.99581 -11.66278 -11.55551 -11.42319 -11.20591 -11.12146 -10.84720 -10.76123 -10.63415 -10.49674 -10.45853 -9.99351 -9.88469 -9.70636 -9.18094 -9.11831 -9.01240 -8.54036 -8.30352 -8.05771 -6.59246 -4.21069 2.30570 2.98686 3.25614 3.40658 3.44603 3.46156 3.59751 3.95218 4.03721 4.18122 4.41588 4.43670 4.58295 4.74516 4.77938 4.88415 4.95575 4.96583 4.99045 5.12526 5.14409 5.25825 5.28674 5.35581 5.39307 5.43165 5.47444 5.55609 5.66262 5.69447 5.71487 5.77459 5.86612 5.97017 6.03113 6.07951 6.10885 6.26414 6.28336 6.40721 6.67500 6.77155 6.79199 6.96969 7.02593 7.37376 7.43483 7.68425 7.69288 8.24458 8.37988 8.50895 8.71412 9.01363 9.45581 10.79074 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022239 B = 0.002522 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.747975 B =11097.792188 C =11629.327143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.248 3.752 4 H 0.042 0.958 5 C -0.623 4.623 6 H 0.062 0.938 7 C 0.045 3.955 8 N -0.893 5.893 9 Si 1.034 2.966 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.284 1.284 13 N -0.701 5.701 14 C 0.506 3.494 15 O -0.552 6.552 16 C -0.108 4.108 17 C -0.126 4.126 18 C 0.132 3.868 19 N -0.620 5.620 20 C 0.726 3.274 21 O -0.589 6.589 22 N -0.639 5.639 23 C 0.091 3.909 24 C -0.136 4.136 25 C -0.134 4.134 26 C 0.125 3.875 27 C 0.040 3.960 28 C -0.110 4.110 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.271 0.729 35 H 0.391 0.609 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.138 0.862 51 H 0.081 0.919 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.562 10.732 -12.205 27.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C 0.144 3.856 4 H 0.060 0.940 5 C -0.660 4.660 6 H 0.080 0.920 7 C -0.163 4.163 8 N -0.525 5.525 9 Si 0.861 3.139 10 H -0.210 1.210 11 H -0.194 1.194 12 H -0.210 1.210 13 N -0.348 5.348 14 C 0.291 3.709 15 O -0.432 6.432 16 C -0.130 4.130 17 C -0.164 4.164 18 C 0.009 3.991 19 N -0.357 5.357 20 C 0.429 3.571 21 O -0.467 6.467 22 N -0.378 5.378 23 C -0.031 4.031 24 C -0.174 4.174 25 C -0.172 4.172 26 C 0.002 3.998 27 C -0.081 4.081 28 C -0.149 4.149 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.224 0.776 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.154 0.846 51 H 0.099 0.901 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.097 10.687 -10.048 26.523 hybrid contribution 0.178 0.132 -1.963 1.976 sum -21.919 10.819 -12.012 27.235 Atomic orbital electron populations 1.21875 0.97492 0.98762 1.01742 1.22199 0.93670 0.99864 1.01100 1.19072 0.93993 0.87737 0.84757 0.94035 1.22034 0.89553 1.46983 1.07442 0.92027 1.25626 0.95189 0.91987 1.03475 1.70827 1.15971 1.39874 1.25819 0.84182 0.76464 0.77346 0.75921 1.21016 1.19422 1.21007 1.46273 1.16551 1.54266 1.17747 1.20345 0.82214 0.79251 0.89080 1.90643 1.58839 1.61008 1.32662 1.21329 0.96471 0.97406 0.97753 1.21924 0.98789 0.97026 0.98687 1.21511 0.80769 1.00164 0.96647 1.47187 1.11109 1.06499 1.70919 1.15394 0.80980 0.82644 0.78038 1.90916 1.50405 1.48311 1.57075 1.47510 1.05239 1.13595 1.71463 1.22418 0.87209 0.93657 0.99808 1.22756 0.96538 0.97626 1.00499 1.22809 0.95338 0.99274 0.99811 1.22065 0.92458 0.84189 1.01058 1.23578 0.95841 0.91818 0.96870 1.21682 0.95260 1.00624 0.97310 0.92552 0.93880 0.95187 0.93096 0.92323 0.91940 0.77621 0.89110 0.90832 0.89856 0.91490 0.88621 0.90219 0.90138 0.90222 0.89758 0.89627 0.90541 0.91583 0.90455 0.91782 0.84584 0.90051 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.42 37.16 0.31 -2.48 16 2 C -0.13 -2.86 5.17 -26.73 -0.14 -3.00 16 3 C 0.25 5.84 1.87 -69.08 -0.13 5.71 16 4 H 0.04 1.08 5.98 -51.93 -0.31 0.77 16 5 C -0.62 -16.65 8.97 -34.44 -0.31 -16.96 16 6 H 0.06 1.72 7.96 -52.49 -0.42 1.31 16 7 C 0.04 1.25 5.29 -17.82 -0.09 1.15 16 8 N -0.89 -26.44 13.70 55.43 0.76 -25.68 16 9 Si 1.03 25.04 26.41 -169.99 -4.49 20.55 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.21 5.80 56.52 0.33 -5.88 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.70 -13.68 4.81 -54.93 -0.26 -13.95 16 14 C 0.51 9.11 5.43 -10.99 -0.06 9.05 16 15 O -0.55 -11.68 13.10 5.56 0.07 -11.61 16 16 C -0.11 -1.42 2.49 -91.73 -0.23 -1.65 16 17 C -0.13 -1.59 5.27 -26.61 -0.14 -1.73 16 18 C 0.13 1.54 6.44 -3.71 -0.02 1.51 16 19 N -0.62 -7.29 2.97 -178.50 -0.53 -7.82 16 20 C 0.73 9.77 8.36 -86.92 -0.73 9.04 16 21 O -0.59 -10.15 16.08 5.29 0.09 -10.06 16 22 N -0.64 -6.37 3.33 -226.43 -0.75 -7.12 16 23 C 0.09 0.59 4.85 -3.07 -0.01 0.57 16 24 C -0.14 -0.58 6.95 -24.90 -0.17 -0.75 16 25 C -0.13 -0.63 7.08 -24.58 -0.17 -0.80 16 26 C 0.13 1.01 6.89 -2.53 -0.02 0.99 16 27 C 0.04 0.37 5.39 -3.71 -0.02 0.35 16 28 C -0.11 -1.30 4.65 -26.62 -0.12 -1.42 16 29 H 0.06 1.19 7.38 -51.93 -0.38 0.80 16 30 H 0.04 0.82 5.84 -51.92 -0.30 0.51 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.34 5.58 -51.93 -0.29 1.05 16 34 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 35 H 0.39 6.87 7.92 -40.82 -0.32 6.54 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.01 7.52 -51.93 -0.39 0.62 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 1.24 7.00 -51.93 -0.36 0.88 16 41 H 0.08 0.44 6.46 -51.93 -0.34 0.10 16 42 H 0.08 0.52 6.88 -51.93 -0.36 0.17 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.14 1.02 1.63 -110.42 -0.18 0.84 16 51 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 52 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -34.24 386.67 -10.15 -44.39 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -8.79 Total: 5.87 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.06 Total: -0.40 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.79 Total: -54.57 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: 0.16 Total: -21.67 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -4.49 Total: 20.55 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.24 -10.15 -44.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183936123.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.327 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds