Wall clock time and date at job start Tue Mar 31 2020 20:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47254 * 2 1 4 4 H 1.08998 * 109.46944 * 62.22994 * 3 2 1 5 5 C 1.50696 * 109.47231 * 182.23154 * 3 2 1 6 6 H 1.07997 * 119.99969 * 114.60596 * 5 3 2 7 7 C 1.37885 * 120.00001 * 294.60222 * 5 3 2 8 8 N 1.31510 * 119.99696 * 158.24817 * 7 5 3 9 9 Si 1.86801 * 119.99918 * 338.25370 * 7 5 3 10 10 H 1.48503 * 109.46950 * 269.99709 * 9 7 5 11 11 H 1.48497 * 109.47155 * 29.99813 * 9 7 5 12 12 H 1.48500 * 109.47146 * 149.99933 * 9 7 5 13 13 N 1.46504 * 109.47302 * 302.23405 * 3 2 1 14 14 C 1.34778 * 120.00124 * 84.99762 * 13 3 2 15 15 O 1.21281 * 120.00092 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00102 * 179.97438 * 14 13 3 17 17 C 1.53040 * 109.45946 * 300.07296 * 16 14 13 18 18 C 1.53189 * 109.31425 * 178.61517 * 17 16 14 19 19 N 1.46923 * 108.77809 * 54.62869 * 18 17 16 20 20 C 1.34776 * 120.63072 * 126.37364 * 19 18 17 21 21 O 1.21584 * 120.00037 * 353.82700 * 20 19 18 22 22 N 1.34778 * 119.99821 * 173.83261 * 20 19 18 23 23 C 1.47017 * 125.65012 * 6.87978 * 22 20 19 24 24 C 1.54322 * 107.27806 * 180.97153 * 23 22 20 25 25 C 1.55154 * 102.86020 * 22.52678 * 24 23 22 26 26 C 1.47431 * 125.64679 * 187.19300 * 22 20 19 27 27 C 1.46927 * 118.73972 * 306.39680 * 19 18 17 28 28 C 1.53034 * 109.46359 * 180.02562 * 16 14 13 29 29 H 1.09005 * 109.47138 * 299.99975 * 1 2 3 30 30 H 1.09008 * 109.46952 * 59.99329 * 1 2 3 31 31 H 1.08991 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46624 * 240.00324 * 2 1 3 33 33 H 1.09000 * 109.47242 * 120.00600 * 2 1 3 34 34 H 0.97000 * 120.00354 * 354.94064 * 8 7 5 35 35 H 0.97001 * 119.99471 * 264.99581 * 13 3 2 36 36 H 1.08999 * 109.45751 * 60.02827 * 16 14 13 37 37 H 1.09004 * 109.49535 * 298.56132 * 17 16 14 38 38 H 1.08996 * 109.50395 * 58.65761 * 17 16 14 39 39 H 1.09004 * 109.58386 * 294.84365 * 18 17 16 40 40 H 1.09000 * 109.59354 * 174.42220 * 18 17 16 41 41 H 1.08998 * 109.89039 * 300.51659 * 23 22 20 42 42 H 1.08998 * 109.88402 * 61.68488 * 23 22 20 43 43 H 1.09002 * 110.92407 * 264.11651 * 24 23 22 44 44 H 1.08994 * 110.59319 * 140.78831 * 24 23 22 45 45 H 1.09001 * 111.00718 * 206.22879 * 25 24 23 46 46 H 1.09001 * 111.00440 * 82.37800 * 25 24 23 47 47 H 1.08994 * 110.36666 * 274.67260 * 26 22 20 48 48 H 1.08998 * 110.36269 * 36.99377 * 26 22 20 49 49 H 1.09001 * 109.58667 * 293.81518 * 27 19 18 50 50 H 1.08999 * 109.59022 * 173.39816 * 27 19 18 51 51 H 1.09001 * 109.49805 * 301.33930 * 28 16 14 52 52 H 1.08998 * 109.49897 * 61.40184 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7097 1.9446 0.9093 5 6 3.5460 1.4428 -0.0553 6 1 4.0545 1.8434 -0.9198 7 6 4.2747 0.9318 0.9978 8 7 5.5135 0.5333 0.8081 9 14 3.5021 0.8054 2.6939 10 1 3.7580 2.0583 3.4489 11 1 2.0378 0.6003 2.5568 12 1 4.0966 -0.3428 3.4243 13 7 1.5083 2.1485 -1.1684 14 6 0.2873 2.7167 -1.1143 15 8 -0.3710 2.6440 -0.0983 16 6 -0.2594 3.4435 -2.3159 17 6 0.6731 4.6012 -2.6794 18 6 0.1327 5.3162 -3.9218 19 7 -1.2578 5.7179 -3.6689 20 6 -1.6447 6.9976 -3.8395 21 8 -0.8198 7.8530 -4.0965 22 7 -2.9461 7.3290 -3.7253 23 6 -4.0230 6.4319 -3.2813 24 6 -5.3393 7.2359 -3.3320 25 6 -5.0161 8.3641 -4.3468 26 6 -3.5266 8.6493 -4.0310 27 6 -2.2183 4.6981 -3.2260 28 6 -1.6513 3.9906 -1.9912 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 5.8905 0.5300 -0.0856 35 1 2.0350 2.2070 -1.9808 36 1 -0.3271 2.7540 -3.1575 37 1 0.7219 5.3040 -1.8476 38 1 1.6703 4.2136 -2.8877 39 1 0.1682 4.6407 -4.7765 40 1 0.7368 6.2000 -4.1266 41 1 -4.0865 5.5711 -3.9469 42 1 -3.8324 6.1007 -2.2606 43 1 -5.5781 7.6537 -2.3539 44 1 -6.1557 6.6121 -3.6958 45 1 -5.6305 9.2450 -4.1606 46 1 -5.1380 8.0142 -5.3719 47 1 -3.4415 9.3100 -3.1683 48 1 -3.0326 9.0894 -4.8972 49 1 -2.3746 3.9722 -4.0240 50 1 -3.1654 5.1740 -2.9717 51 1 -2.3088 3.1682 -1.7095 52 1 -1.5803 4.6988 -1.1657 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183936123.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:25 Heat of formation + Delta-G solvation = -54.571910 kcal Electronic energy + Delta-G solvation = -30774.708474 eV Core-core repulsion = 26774.409940 eV Total energy + Delta-G solvation = -4000.298534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00990 -40.94332 -38.85808 -38.18503 -36.96342 -34.63999 -34.32847 -32.92876 -32.62898 -31.81734 -29.97600 -29.25754 -27.26570 -24.67986 -24.39087 -24.08105 -22.51283 -22.22797 -21.64878 -21.13616 -20.63747 -19.71454 -18.22931 -17.90023 -17.64664 -17.23775 -17.17555 -16.32297 -15.83522 -15.77737 -15.62393 -15.19514 -15.03261 -14.76298 -14.62883 -14.55338 -14.51128 -14.28782 -14.03099 -13.89394 -13.69139 -13.42493 -13.33233 -13.17303 -12.92585 -12.73048 -12.47031 -12.35295 -12.29370 -12.11746 -12.04775 -11.75422 -11.70163 -11.58378 -11.52180 -11.46694 -11.16448 -10.81330 -10.50834 -10.45780 -10.03814 -9.75462 -9.34792 -8.80304 -6.42418 1.45638 1.46132 1.49105 1.68195 1.80997 2.01433 2.41463 2.51843 2.73179 2.96666 3.51745 3.64229 3.69726 3.77198 3.83003 4.00960 4.08074 4.21236 4.26710 4.28334 4.31954 4.38657 4.41319 4.43117 4.49439 4.57990 4.66311 4.68836 4.76714 4.79505 4.84204 4.87808 4.92811 4.97354 4.99735 5.07995 5.10015 5.14989 5.24020 5.25963 5.28364 5.32277 5.37107 5.54107 5.55973 5.71283 5.72136 5.93891 6.02313 6.54354 6.83338 6.90662 7.28110 7.42137 7.50362 8.56706 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022239 B = 0.002522 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.747975 B =11097.792188 C =11629.327143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.252 3.748 4 H 0.019 0.981 5 C -0.618 4.618 6 H 0.040 0.960 7 C 0.000 4.000 8 N -0.923 5.923 9 Si 1.069 2.931 10 H -0.279 1.279 11 H -0.253 1.253 12 H -0.279 1.279 13 N -0.704 5.704 14 C 0.504 3.496 15 O -0.582 6.582 16 C -0.097 4.097 17 C -0.118 4.118 18 C 0.136 3.864 19 N -0.622 5.622 20 C 0.714 3.286 21 O -0.639 6.639 22 N -0.640 5.640 23 C 0.079 3.921 24 C -0.127 4.127 25 C -0.122 4.122 26 C 0.115 3.885 27 C 0.044 3.956 28 C -0.105 4.105 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.260 0.740 35 H 0.401 0.599 36 H 0.122 0.878 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.091 0.909 50 H 0.159 0.841 51 H 0.089 0.911 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.185 10.015 -13.234 31.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.147 3.853 4 H 0.037 0.963 5 C -0.656 4.656 6 H 0.058 0.942 7 C -0.202 4.202 8 N -0.558 5.558 9 Si 0.891 3.109 10 H -0.205 1.205 11 H -0.178 1.178 12 H -0.204 1.204 13 N -0.352 5.352 14 C 0.292 3.708 15 O -0.463 6.463 16 C -0.118 4.118 17 C -0.157 4.157 18 C 0.013 3.987 19 N -0.358 5.358 20 C 0.417 3.583 21 O -0.522 6.522 22 N -0.378 5.378 23 C -0.041 4.041 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.008 4.008 27 C -0.076 4.076 28 C -0.144 4.144 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.235 0.765 36 H 0.140 0.860 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.127 0.873 45 H 0.122 0.878 46 H 0.100 0.900 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.109 0.891 50 H 0.175 0.825 51 H 0.107 0.893 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -25.777 9.965 -11.099 29.781 hybrid contribution 1.310 0.429 -1.677 2.171 sum -24.467 10.394 -12.776 29.494 Atomic orbital electron populations 1.21735 0.95273 1.00340 1.01292 1.22097 0.95576 0.98283 1.00704 1.18756 0.91916 0.89087 0.85531 0.96302 1.22216 0.91578 1.45475 1.06297 0.94190 1.26716 0.95102 0.91743 1.06592 1.70923 1.17193 1.42422 1.25216 0.83722 0.76740 0.77676 0.72763 1.20463 1.17767 1.20433 1.46138 1.17498 1.54564 1.16994 1.21145 0.81160 0.78373 0.90131 1.90630 1.59478 1.61893 1.34296 1.21342 0.96885 0.97346 0.96226 1.21842 0.99212 0.96370 0.98291 1.21463 0.80821 0.99696 0.96727 1.47270 1.11446 1.06514 1.70548 1.15698 0.81812 0.82686 0.78078 1.90870 1.52176 1.49754 1.59371 1.47637 1.04795 1.14935 1.70414 1.22680 0.87184 0.94165 1.00108 1.22769 0.95734 0.97292 1.00720 1.22783 0.92607 1.00337 1.00293 1.22251 0.94715 0.83577 1.00234 1.23813 0.95812 0.91609 0.96362 1.21655 0.94548 1.00384 0.97765 0.94085 0.93200 0.92548 0.92911 0.93348 0.93039 0.76508 0.85968 0.93694 0.89475 0.88725 0.90538 0.88351 0.90029 0.89758 0.87312 0.87790 0.90008 0.92077 0.92149 0.89122 0.82513 0.89259 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 8.42 71.98 0.61 -4.20 16 2 C -0.13 -5.49 5.17 30.59 0.16 -5.33 16 3 C 0.25 11.82 1.87 44.24 0.08 11.90 16 4 H 0.02 0.99 5.98 -2.39 -0.01 0.97 16 5 C -0.62 -33.51 8.97 25.60 0.23 -33.28 16 6 H 0.04 2.29 7.96 -2.91 -0.02 2.27 16 7 C 0.00 0.01 5.29 84.66 0.45 0.46 16 8 N -0.92 -55.78 13.70 21.45 0.29 -55.49 16 9 Si 1.07 50.77 26.41 68.60 1.81 52.58 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.25 -11.31 5.80 99.48 0.58 -10.73 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 N -0.70 -26.97 4.81 -446.10 -2.14 -29.12 16 14 C 0.50 17.57 5.43 87.66 0.48 18.05 16 15 O -0.58 -24.11 13.10 -3.03 -0.04 -24.15 16 16 C -0.10 -2.34 2.49 -11.52 -0.03 -2.37 16 17 C -0.12 -2.92 5.27 30.67 0.16 -2.76 16 18 C 0.14 3.03 6.44 86.36 0.56 3.58 16 19 N -0.62 -13.73 2.97 -836.92 -2.49 -16.21 16 20 C 0.71 19.04 8.36 179.05 1.50 20.54 16 21 O -0.64 -22.87 16.08 -3.98 -0.06 -22.93 16 22 N -0.64 -12.01 3.33 -988.56 -3.29 -15.30 16 23 C 0.08 0.79 4.85 86.73 0.42 1.21 16 24 C -0.13 -0.62 6.95 31.78 0.22 -0.40 16 25 C -0.12 -0.81 7.08 31.99 0.23 -0.58 16 26 C 0.11 1.76 6.89 86.85 0.60 2.36 16 27 C 0.04 0.68 5.39 86.36 0.47 1.14 16 28 C -0.10 -2.23 4.65 30.67 0.14 -2.09 16 29 H 0.04 1.65 7.38 -2.38 -0.02 1.63 16 30 H 0.05 1.76 5.84 -2.38 -0.01 1.75 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.05 2.16 5.58 -2.39 -0.01 2.15 16 34 H 0.26 15.72 8.73 -92.71 -0.81 14.92 16 35 H 0.40 13.77 7.92 -92.71 -0.73 13.03 16 36 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.09 2.07 7.52 -2.39 -0.02 2.05 16 39 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.08 2.03 7.00 -2.39 -0.02 2.02 16 41 H 0.10 0.66 6.46 -2.39 -0.02 0.64 16 42 H 0.08 0.83 6.88 -2.39 -0.02 0.82 16 43 H 0.08 0.37 8.14 -2.39 -0.02 0.36 16 44 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.06 1.11 8.11 -2.39 -0.02 1.09 16 49 H 0.09 1.01 8.14 -2.39 -0.02 1.00 16 50 H 0.16 1.81 1.63 -57.32 -0.09 1.72 16 51 H 0.09 1.80 8.07 -2.39 -0.02 1.79 16 52 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 Total: -1.00 -77.43 386.67 0.27 -77.16 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -0.07 Total: 25.24 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 6.26 Total: 8.23 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -7.63 Total: -116.12 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -0.10 Total: -47.08 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 1.81 Total: 52.58 kcal Total: -77.43 0.27 -77.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183936123.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.585 kcal (2) G-P(sol) polarization free energy of solvation -77.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds