Wall clock time and date at job start Tue Mar 31 2020 20:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47424 * 2 1 4 4 H 1.09000 * 109.47456 * 305.55609 * 3 2 1 5 5 C 1.50698 * 109.47159 * 185.55346 * 3 2 1 6 6 H 1.08000 * 120.00089 * 244.56392 * 5 3 2 7 7 C 1.37872 * 120.00018 * 64.57064 * 5 3 2 8 8 N 1.31519 * 120.00168 * 5.87264 * 7 5 3 9 9 Si 1.86803 * 120.00128 * 185.87630 * 7 5 3 10 10 H 1.48502 * 109.47203 * 94.99340 * 9 7 5 11 11 H 1.48498 * 109.47167 * 214.99460 * 9 7 5 12 12 H 1.48500 * 109.47055 * 334.99252 * 9 7 5 13 13 N 1.46509 * 109.47192 * 65.55332 * 3 2 1 14 14 C 1.34780 * 119.99968 * 275.00278 * 13 3 2 15 15 O 1.21279 * 119.99523 * 359.97438 * 14 13 3 16 16 C 1.50694 * 120.00001 * 179.97438 * 14 13 3 17 17 C 1.53038 * 109.46162 * 180.02562 * 16 14 13 18 18 C 1.53192 * 109.31281 * 178.61461 * 17 16 14 19 19 N 1.46925 * 108.77759 * 54.63429 * 18 17 16 20 20 C 1.34772 * 120.63178 * 126.37008 * 19 18 17 21 21 O 1.21580 * 120.00114 * 12.15901 * 20 19 18 22 22 N 1.34782 * 120.00008 * 192.16106 * 20 19 18 23 23 C 1.47024 * 125.64883 * 353.51986 * 22 20 19 24 24 C 1.54320 * 107.27291 * 178.89235 * 23 22 20 25 25 C 1.55155 * 102.94048 * 337.80331 * 24 23 22 26 26 C 1.47426 * 125.64993 * 173.45948 * 22 20 19 27 27 C 1.46932 * 118.73857 * 306.64135 * 19 18 17 28 28 C 1.52769 * 109.00538 * 53.30762 * 27 19 18 29 29 H 1.09005 * 109.47210 * 59.99641 * 1 2 3 30 30 H 1.08998 * 109.47465 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46952 * 300.00214 * 1 2 3 32 32 H 1.09003 * 109.46952 * 239.99786 * 2 1 3 33 33 H 1.09005 * 109.47210 * 120.00359 * 2 1 3 34 34 H 0.96995 * 120.00181 * 180.02562 * 8 7 5 35 35 H 0.96997 * 119.99727 * 94.99737 * 13 3 2 36 36 H 1.09006 * 109.44725 * 299.96726 * 16 14 13 37 37 H 1.08999 * 109.49801 * 58.66235 * 17 16 14 38 38 H 1.09006 * 109.49482 * 298.56296 * 17 16 14 39 39 H 1.09000 * 109.58699 * 294.84383 * 18 17 16 40 40 H 1.08998 * 109.58635 * 174.41794 * 18 17 16 41 41 H 1.09001 * 109.87931 * 59.47186 * 23 22 20 42 42 H 1.08998 * 109.87737 * 298.31167 * 23 22 20 43 43 H 1.08997 * 110.72113 * 96.16761 * 24 23 22 44 44 H 1.09001 * 110.72084 * 219.44261 * 24 23 22 45 45 H 1.09004 * 111.00497 * 153.57415 * 25 24 23 46 46 H 1.09000 * 111.00669 * 277.42645 * 25 24 23 47 47 H 1.09001 * 110.36148 * 85.33399 * 26 22 20 48 48 H 1.09003 * 110.45637 * 323.06880 * 26 22 20 49 49 H 1.08994 * 109.58504 * 173.14391 * 27 19 18 50 50 H 1.09002 * 109.58907 * 293.57439 * 27 19 18 51 51 H 1.08999 * 109.56188 * 185.55446 * 28 27 19 52 52 H 1.09005 * 109.35452 * 65.49945 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5978 1.9842 -0.8360 5 6 3.5408 1.4446 -0.1375 6 1 4.1562 1.8196 0.6669 7 6 4.1281 0.9679 -1.2902 8 7 3.3797 0.6193 -2.3140 9 14 5.9869 0.8171 -1.3979 10 1 6.3928 -0.5662 -1.0414 11 1 6.4288 1.1212 -2.7826 12 1 6.6168 1.7762 -0.4554 13 7 1.6639 2.0934 1.2575 14 6 0.4477 2.6600 1.3855 15 8 -0.3351 2.6312 0.4596 16 6 0.0606 3.3291 2.6791 17 6 -1.3601 3.8854 2.5602 18 6 -1.7629 4.5343 3.8882 19 7 -0.7511 5.5358 4.2513 20 6 -1.1098 6.8050 4.5284 21 8 -2.2814 7.0827 4.6969 22 7 -0.1697 7.7666 4.6186 23 6 1.2839 7.5509 4.5718 24 6 1.9564 8.9354 4.6838 25 6 0.8372 9.9040 4.2185 26 6 -0.4286 9.2091 4.7792 27 6 0.6599 5.1289 4.3007 28 6 1.0349 4.4720 2.9734 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.7928 0.2836 -3.1248 35 1 2.2902 2.1166 1.9978 36 1 0.0986 2.6013 3.4897 37 1 -2.0501 3.0743 2.3275 38 1 -1.3934 4.6313 1.7660 39 1 -1.8180 3.7721 4.6654 40 1 -2.7333 5.0183 3.7788 41 1 1.5586 7.0806 3.6276 42 1 1.5921 6.9205 5.4058 43 1 2.2420 9.1431 5.7150 44 1 2.8208 8.9989 4.0228 45 1 0.9678 10.8924 4.6591 46 1 0.8003 9.9646 3.1308 47 1 -0.5616 9.4555 5.8326 48 1 -1.3084 9.5042 4.2073 49 1 1.2873 6.0051 4.4633 50 1 0.8064 4.4161 5.1122 51 1 2.0495 4.0784 3.0349 52 1 0.9790 5.2123 2.1753 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183936142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:27 Heat of formation + Delta-G solvation = -55.253121 kcal Electronic energy + Delta-G solvation = -30842.586736 eV Core-core repulsion = 26842.258663 eV Total energy + Delta-G solvation = -4000.328073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.99126 -40.82989 -38.80279 -38.16481 -36.84823 -34.45005 -34.12877 -33.09309 -32.28894 -31.87325 -29.93165 -29.04510 -27.23632 -25.08529 -24.41575 -24.14658 -22.42851 -22.29321 -21.58355 -21.06055 -20.46516 -18.86383 -18.35467 -17.61197 -17.38246 -17.23690 -17.09184 -16.26323 -16.11340 -15.99284 -15.49442 -15.21280 -14.99425 -14.71913 -14.63241 -14.55751 -14.30841 -13.94463 -13.84186 -13.64048 -13.49089 -13.33647 -13.21491 -13.17347 -12.88123 -12.78721 -12.62460 -12.38010 -12.15952 -12.11474 -12.07542 -12.00440 -11.67406 -11.58962 -11.57031 -11.45086 -11.04206 -10.84638 -10.54646 -10.37036 -10.00079 -9.57838 -9.32398 -8.16234 -6.30852 1.46073 1.46644 1.49910 1.57145 1.91368 2.03736 2.38450 2.67431 2.75793 3.15684 3.54437 3.63732 3.73916 3.82993 3.88350 4.05194 4.08887 4.26611 4.29614 4.31012 4.40387 4.46520 4.47551 4.51216 4.55396 4.69113 4.71497 4.76076 4.79398 4.84496 4.87773 4.92755 4.98640 5.00664 5.07528 5.12788 5.15573 5.24838 5.26716 5.30933 5.37782 5.44075 5.57034 5.57558 5.65729 5.78002 5.95970 5.96922 6.12320 6.79539 6.85476 7.06389 7.36837 7.43165 7.67185 8.91849 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.002880 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.303882 B = 9721.194213 C =11250.919585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.114 4.114 3 C 0.278 3.722 4 H -0.004 1.004 5 C -0.544 4.544 6 H 0.076 0.924 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.967 3.033 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.258 1.258 13 N -0.702 5.702 14 C 0.500 3.500 15 O -0.592 6.592 16 C -0.095 4.095 17 C -0.103 4.103 18 C 0.139 3.861 19 N -0.623 5.623 20 C 0.715 3.285 21 O -0.638 6.638 22 N -0.640 5.640 23 C 0.079 3.921 24 C -0.127 4.127 25 C -0.127 4.127 26 C 0.117 3.883 27 C 0.043 3.957 28 C -0.118 4.118 29 H 0.021 0.979 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.263 0.737 35 H 0.404 0.596 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.160 0.840 50 H 0.090 0.910 51 H 0.102 0.898 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 14.256 19.550 24.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.154 4.154 3 C 0.174 3.826 4 H 0.014 0.986 5 C -0.582 4.582 6 H 0.094 0.906 7 C -0.186 4.186 8 N -0.558 5.558 9 Si 0.792 3.208 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.182 1.182 13 N -0.351 5.351 14 C 0.288 3.712 15 O -0.473 6.473 16 C -0.117 4.117 17 C -0.142 4.142 18 C 0.016 3.984 19 N -0.359 5.359 20 C 0.419 3.581 21 O -0.520 6.520 22 N -0.378 5.378 23 C -0.041 4.041 24 C -0.165 4.165 25 C -0.165 4.165 26 C -0.006 4.006 27 C -0.077 4.077 28 C -0.157 4.157 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.239 0.761 36 H 0.140 0.860 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.126 0.874 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.176 0.824 50 H 0.108 0.892 51 H 0.120 0.880 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.443 14.237 18.797 23.584 hybrid contribution 0.576 -0.553 -0.826 1.149 sum 0.133 13.684 17.971 22.588 Atomic orbital electron populations 1.21676 0.96928 0.99144 1.00339 1.21713 0.93856 0.99318 1.00469 1.18315 0.93759 0.88951 0.81591 0.98568 1.21590 0.91403 1.42662 1.02551 0.90592 1.25798 1.03143 0.94814 0.94865 1.70130 1.37279 1.43913 1.04474 0.85403 0.79342 0.78743 0.77281 1.20038 1.21727 1.18162 1.46216 1.15488 1.56056 1.17312 1.21193 0.81679 0.78197 0.90177 1.90661 1.52120 1.61228 1.43336 1.21311 0.96697 0.98728 0.94937 1.21610 0.95700 1.00032 0.96905 1.21446 0.91197 0.90250 0.95556 1.47236 1.09145 1.07503 1.72042 1.15684 0.83734 0.80785 0.77907 1.90860 1.18697 1.82210 1.60213 1.47674 1.06391 1.06987 1.76742 1.22653 0.79255 0.99707 1.02529 1.22764 0.98047 0.91606 1.04035 1.22796 0.92648 0.99706 1.01335 1.22233 0.99305 0.77952 1.01097 1.23657 0.81795 1.05111 0.97177 1.21809 0.99436 0.96286 0.98145 0.95971 0.93572 0.93322 0.92877 0.93305 0.92804 0.76095 0.86004 0.90558 0.93901 0.89283 0.90781 0.90109 0.88131 0.88655 0.88179 0.87448 0.91176 0.90984 0.92688 0.82369 0.89160 0.87982 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.53 71.98 0.61 -4.86 16 2 C -0.11 -5.47 5.49 30.59 0.17 -5.30 16 3 C 0.28 13.74 2.11 44.24 0.09 13.84 16 4 H 0.00 -0.22 7.57 -2.39 -0.02 -0.24 16 5 C -0.54 -27.62 8.68 25.60 0.22 -27.40 16 6 H 0.08 3.53 7.73 -2.91 -0.02 3.51 16 7 C 0.01 0.73 5.21 84.65 0.44 1.17 16 8 N -0.92 -52.70 11.93 21.45 0.26 -52.44 16 9 Si 0.97 40.87 29.54 68.60 2.03 42.89 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 13 N -0.70 -26.75 4.91 -446.10 -2.19 -28.94 16 14 C 0.50 18.47 5.75 87.65 0.50 18.97 16 15 O -0.59 -27.67 13.12 -3.03 -0.04 -27.71 16 16 C -0.10 -2.40 2.49 -11.52 -0.03 -2.43 16 17 C -0.10 -2.81 4.65 30.67 0.14 -2.67 16 18 C 0.14 3.28 6.39 86.36 0.55 3.83 16 19 N -0.62 -14.16 2.98 -837.73 -2.50 -16.66 16 20 C 0.72 19.43 8.32 179.05 1.49 20.92 16 21 O -0.64 -22.80 16.16 -3.97 -0.06 -22.86 16 22 N -0.64 -12.56 3.33 -990.93 -3.30 -15.86 16 23 C 0.08 0.88 4.85 86.73 0.42 1.30 16 24 C -0.13 -0.82 6.95 31.78 0.22 -0.60 16 25 C -0.13 -1.17 7.08 31.99 0.23 -0.94 16 26 C 0.12 1.90 6.88 86.85 0.60 2.50 16 27 C 0.04 0.66 5.59 86.22 0.48 1.14 16 28 C -0.12 -2.35 5.11 30.53 0.16 -2.20 16 29 H 0.02 1.07 7.88 -2.38 -0.02 1.05 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 2.05 5.63 -2.39 -0.01 2.04 16 32 H 0.05 2.86 6.57 -2.39 -0.02 2.84 16 33 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.40 12.46 7.92 -92.71 -0.73 11.73 16 36 H 0.12 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.08 2.16 8.07 -2.39 -0.02 2.14 16 38 H 0.04 1.41 8.13 -2.38 -0.02 1.39 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 2.04 7.12 -2.39 -0.02 2.02 16 41 H 0.08 0.95 6.56 -2.39 -0.02 0.94 16 42 H 0.10 0.74 6.79 -2.39 -0.02 0.73 16 43 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.10 0.43 8.14 -2.39 -0.02 0.42 16 45 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.05 1.12 8.10 -2.39 -0.02 1.11 16 49 H 0.16 1.82 1.52 -58.08 -0.09 1.73 16 50 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.10 1.67 7.52 -2.39 -0.02 1.65 16 52 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -77.26 392.36 0.60 -76.66 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.10 Total: 27.65 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 6.30 Total: 17.27 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -7.73 Total: -113.90 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -0.10 Total: -50.57 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -77.26 0.60 -76.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183936142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.408 kcal (2) G-P(sol) polarization free energy of solvation -77.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds