Wall clock time and date at job start Tue Mar 31 2020 20:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47127 * 2 1 4 4 H 1.09008 * 109.46754 * 305.80180 * 3 2 1 5 5 C 1.50700 * 109.47211 * 185.80364 * 3 2 1 6 6 H 1.08007 * 119.99438 * 242.30050 * 5 3 2 7 7 C 1.37871 * 120.00066 * 62.29703 * 5 3 2 8 8 N 1.31522 * 119.99895 * 194.40259 * 7 5 3 9 9 Si 1.86794 * 120.00179 * 14.40187 * 7 5 3 10 10 H 1.48502 * 109.47027 * 94.61269 * 9 7 5 11 11 H 1.48501 * 109.47142 * 214.61192 * 9 7 5 12 12 H 1.48496 * 109.47121 * 334.61289 * 9 7 5 13 13 N 1.46894 * 109.47081 * 65.79908 * 3 2 1 14 14 C 1.46897 * 111.00163 * 265.30644 * 13 3 2 15 15 C 1.50706 * 109.47654 * 180.82501 * 14 13 3 16 16 C 1.39863 * 126.04070 * 89.96700 * 15 14 13 17 17 C 1.50697 * 125.89996 * 0.02726 * 16 15 14 18 18 N 1.30837 * 108.20286 * 180.02562 * 16 15 14 19 19 N 1.40085 * 108.20286 * 0.02562 * 18 16 15 20 20 C 1.46505 * 126.03490 * 179.97438 * 19 18 16 21 21 C 1.50704 * 109.46902 * 90.02795 * 20 19 18 22 22 O 1.20825 * 119.99656 * 359.97438 * 21 20 19 23 23 O 1.34226 * 120.00355 * 179.72361 * 21 20 19 24 24 C 1.45195 * 117.00456 * 180.27510 * 23 21 20 25 25 C 1.52997 * 109.47000 * 89.99849 * 24 23 21 26 26 C 1.52994 * 109.47310 * 210.00174 * 24 23 21 27 27 C 1.34947 * 107.92939 * 0.26163 * 19 18 16 28 28 C 1.50699 * 126.13029 * 179.73613 * 27 19 18 29 29 H 1.09002 * 109.47478 * 299.11077 * 1 2 3 30 30 H 1.08998 * 109.47394 * 59.10928 * 1 2 3 31 31 H 1.08998 * 109.46980 * 179.10891 * 1 2 3 32 32 H 1.09000 * 109.46902 * 240.00105 * 2 1 3 33 33 H 1.08999 * 109.47484 * 119.99715 * 2 1 3 34 34 H 0.96993 * 119.99735 * 180.02562 * 8 7 5 35 35 H 1.00899 * 111.00007 * 29.25722 * 13 3 2 36 36 H 1.08997 * 109.47758 * 60.81944 * 14 13 3 37 37 H 1.09008 * 109.47041 * 300.82379 * 14 13 3 38 38 H 1.08997 * 109.47544 * 270.00141 * 17 16 15 39 39 H 1.09000 * 109.47217 * 30.00047 * 17 16 15 40 40 H 1.09004 * 109.47134 * 149.99966 * 17 16 15 41 41 H 1.09001 * 109.47185 * 330.02815 * 20 19 18 42 42 H 1.08999 * 109.47100 * 210.02054 * 20 19 18 43 43 H 1.08999 * 109.47021 * 330.00061 * 24 23 21 44 44 H 1.08999 * 109.47060 * 60.00236 * 25 24 23 45 45 H 1.09009 * 109.46909 * 180.02562 * 25 24 23 46 46 H 1.08994 * 109.47317 * 300.00053 * 25 24 23 47 47 H 1.09005 * 109.47307 * 59.99672 * 26 24 23 48 48 H 1.08995 * 109.47360 * 179.97438 * 26 24 23 49 49 H 1.08999 * 109.46986 * 299.99908 * 26 24 23 50 50 H 1.08999 * 109.46871 * 90.02254 * 28 27 19 51 51 H 1.09000 * 109.46749 * 210.02863 * 28 27 19 52 52 H 1.09000 * 109.46633 * 330.02325 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5942 1.9855 -0.8336 5 6 3.5401 1.4450 -0.1437 6 1 4.1573 1.8525 0.6435 7 6 4.1247 0.9270 -1.2798 8 7 5.4137 0.6662 -1.2957 9 14 3.0860 0.5956 -2.7966 10 1 3.1581 1.7636 -3.7107 11 1 3.5990 -0.6111 -3.4938 12 1 1.6753 0.3707 -2.3910 13 7 1.6679 2.0934 1.2632 14 6 0.4089 2.8369 1.1215 15 6 0.0708 3.5061 2.4288 16 6 0.4647 4.7891 2.8226 17 6 1.3020 5.7442 2.0116 18 7 -0.0194 5.0168 4.0166 19 7 -0.7372 3.8839 4.4212 20 6 -1.4402 3.7189 5.6959 21 6 -2.8606 4.2016 5.5524 22 8 -3.2459 4.6390 4.4941 23 8 -3.6991 4.1409 6.5988 24 6 -5.0540 4.6176 6.3864 25 6 -5.9336 3.4593 5.9114 26 6 -5.6099 5.1755 7.6981 27 6 -0.6615 2.9691 3.4320 28 6 -1.2847 1.5970 3.4412 29 1 -0.3634 0.5000 0.8978 30 1 -0.3634 0.5276 -0.8819 31 1 -0.3633 -1.0275 -0.0160 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8250 0.3021 -2.0951 35 1 1.6081 1.4206 2.0128 36 1 -0.3908 2.1486 0.8482 37 1 0.5190 3.5930 0.3441 38 1 2.3564 5.5839 2.2362 39 1 1.1261 5.5704 0.9501 40 1 1.0290 6.7694 2.2620 41 1 -0.9351 4.3002 6.4673 42 1 -1.4411 2.6656 5.9766 43 1 -5.0485 5.4032 5.6308 44 1 -5.9391 2.6737 6.6670 45 1 -6.9507 3.8173 5.7515 46 1 -5.5376 3.0619 4.9769 47 1 -4.9832 6.0007 8.0365 48 1 -6.6268 5.5338 7.5386 49 1 -5.6154 4.3899 8.4537 50 1 -2.2891 1.6513 3.0214 51 1 -0.6770 0.9180 2.8430 52 1 -1.3385 1.2293 4.4659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184087072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:22 Heat of formation + Delta-G solvation = -10.787697 kcal Electronic energy + Delta-G solvation = -30127.832595 eV Core-core repulsion = 26129.432687 eV Total energy + Delta-G solvation = -3998.399908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.48968 -40.64955 -37.31221 -36.82082 -34.33155 -33.57356 -32.98877 -31.88954 -30.89497 -29.77734 -28.14202 -27.78880 -26.71297 -26.30620 -23.87809 -22.67832 -22.08024 -21.03043 -19.97334 -19.46476 -19.24942 -18.37887 -17.05799 -16.68259 -16.67553 -16.09938 -15.28202 -15.03890 -14.76313 -14.55674 -14.19736 -13.89926 -13.88374 -13.66111 -13.49162 -13.16046 -12.91357 -12.83693 -12.80196 -12.64867 -12.55936 -12.53431 -12.23916 -12.19025 -12.06400 -11.78623 -11.73499 -11.59398 -11.40872 -11.04557 -11.02568 -10.90790 -10.80449 -10.71107 -10.47342 -10.16492 -9.89437 -9.35466 -9.21598 -8.92362 -8.33933 -8.12461 -7.18611 -5.99844 -3.91571 1.62068 1.79652 2.17100 2.68457 2.99276 3.31754 3.41099 3.43826 4.18421 4.27939 4.29673 4.42307 4.48669 4.64128 4.65078 4.68241 4.98332 5.03506 5.04783 5.21133 5.25586 5.27219 5.29713 5.37132 5.44399 5.48962 5.53658 5.57124 5.64720 5.65812 5.84075 5.85788 5.95487 5.98273 6.04709 6.06697 6.21355 6.25398 6.33776 6.45666 6.55237 6.64425 6.81451 6.91097 6.92591 7.05156 7.25224 7.38227 7.82480 7.89881 8.05139 8.45940 8.80064 9.17747 9.66965 11.13722 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.002458 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.166195 B =11390.522328 C =12073.392944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.153 4.153 3 C 0.192 3.808 4 H 0.026 0.974 5 C -0.495 4.495 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.897 5.897 9 Si 0.858 3.142 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.252 1.252 13 N -0.663 5.663 14 C 0.126 3.874 15 C -0.205 4.205 16 C 0.107 3.893 17 C -0.070 4.070 18 N -0.298 5.298 19 N -0.373 5.373 20 C 0.150 3.850 21 C 0.441 3.559 22 O -0.484 6.484 23 O -0.354 6.354 24 C 0.081 3.919 25 C -0.170 4.170 26 C -0.149 4.149 27 C 0.089 3.911 28 C -0.095 4.095 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.261 0.739 35 H 0.326 0.674 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.076 0.924 51 H 0.089 0.911 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.105 4.864 16.900 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.193 4.193 3 C 0.083 3.917 4 H 0.043 0.957 5 C -0.534 4.534 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.536 5.536 9 Si 0.686 3.314 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.176 1.176 13 N -0.293 5.293 14 C -0.004 4.004 15 C -0.216 4.216 16 C -0.060 4.060 17 C -0.129 4.129 18 N -0.119 5.119 19 N -0.157 5.157 20 C 0.026 3.974 21 C 0.281 3.719 22 O -0.369 6.369 23 O -0.271 6.271 24 C 0.026 3.974 25 C -0.228 4.228 26 C -0.206 4.206 27 C -0.036 4.036 28 C -0.153 4.153 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.143 0.857 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.097 0.903 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.108 0.892 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.881 6.307 17.425 28.673 hybrid contribution -1.219 -1.522 -1.621 2.536 sum -23.100 4.785 15.803 28.394 Atomic orbital electron populations 1.22093 0.98654 1.00072 1.00808 1.22696 0.92730 1.01968 1.01858 1.19571 0.96671 0.87909 0.87507 0.95659 1.20984 0.89193 1.38776 1.04425 0.90216 1.24911 0.94708 0.95020 0.98536 1.69971 1.10973 1.44111 1.28506 0.87328 0.82216 0.77744 0.84145 1.20925 1.21624 1.17624 1.60641 1.29349 1.31637 1.07698 1.20445 0.91770 0.96476 0.91748 1.19826 1.06887 0.95959 0.98968 1.22241 0.96534 0.95134 0.92097 1.20179 0.98573 0.95679 0.98430 1.77291 1.14261 1.05431 1.14905 1.47607 1.42081 1.12311 1.13679 1.20803 0.86077 1.04937 0.85609 1.24135 0.88882 0.76310 0.82558 1.90735 1.77005 1.40883 1.28295 1.86539 1.23421 1.76907 1.40205 1.22770 0.77918 0.97288 0.99419 1.22214 0.99911 0.98488 1.02137 1.21894 1.01161 1.01704 0.95888 1.20740 1.00346 0.93140 0.89333 1.20511 1.01135 0.90669 1.02964 0.93043 0.93531 0.94149 0.92123 0.92583 0.92918 0.85721 0.94945 0.90938 0.89733 0.90153 0.91700 0.84722 0.85060 0.89702 0.91371 0.90565 0.91938 0.91577 0.90258 0.91240 0.90496 0.89198 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.88 37.16 0.33 -2.32 16 2 C -0.15 -3.15 4.50 -26.73 -0.12 -3.27 16 3 C 0.19 4.36 1.75 -68.87 -0.12 4.24 16 4 H 0.03 0.60 6.48 -51.92 -0.34 0.26 16 5 C -0.50 -13.73 9.31 -34.44 -0.32 -14.05 16 6 H 0.08 2.47 8.06 -52.48 -0.42 2.04 16 7 C 0.07 1.98 5.34 -17.82 -0.10 1.88 16 8 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 9 Si 0.86 20.94 25.70 -169.99 -4.37 16.57 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.25 -5.70 5.34 56.52 0.30 -5.39 16 13 N -0.66 -13.19 6.10 -109.22 -0.67 -13.86 16 14 C 0.13 2.16 5.00 -4.97 -0.02 2.14 16 15 C -0.21 -3.37 5.62 -105.05 -0.59 -3.96 16 16 C 0.11 1.79 7.22 -82.41 -0.59 1.20 16 17 C -0.07 -1.02 10.26 36.00 0.37 -0.65 16 18 N -0.30 -4.94 12.58 33.67 0.42 -4.51 16 19 N -0.37 -5.22 3.10 -58.31 -0.18 -5.40 16 20 C 0.15 1.43 6.84 -5.19 -0.04 1.39 16 21 C 0.44 4.87 8.00 36.01 0.29 5.16 16 22 O -0.48 -7.20 15.65 -18.75 -0.29 -7.49 16 23 O -0.35 -3.23 9.88 -39.25 -0.39 -3.62 16 24 C 0.08 0.63 3.18 -26.74 -0.09 0.54 16 25 C -0.17 -1.13 9.55 37.16 0.35 -0.78 16 26 C -0.15 -0.78 9.57 37.15 0.36 -0.42 16 27 C 0.09 1.28 6.93 -82.26 -0.57 0.71 16 28 C -0.09 -1.02 9.72 36.01 0.35 -0.67 16 29 H 0.05 0.76 4.28 -51.93 -0.22 0.54 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.35 4.58 -51.93 -0.24 1.11 16 33 H 0.06 1.13 8.00 -51.93 -0.42 0.72 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.33 6.18 8.24 -39.29 -0.32 5.85 16 36 H 0.03 0.53 4.77 -51.93 -0.25 0.28 16 37 H 0.07 1.29 7.16 -51.92 -0.37 0.92 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.14 7.26 -51.93 -0.38 0.77 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.13 0.80 7.04 -51.93 -0.37 0.44 16 43 H 0.08 0.79 7.16 -51.93 -0.37 0.42 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.09 1.00 6.34 -51.93 -0.33 0.67 16 52 H 0.07 0.54 7.07 -51.93 -0.37 0.18 16 LS Contribution 410.64 15.07 6.19 6.19 Total: -1.00 -34.66 410.64 -7.72 -42.38 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -8.70 Total: 5.16 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -0.51 Total: -8.86 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.35 Total: -50.34 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.68 Total: -11.11 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.37 Total: 16.57 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.66 -7.72 -42.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.593 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds