Wall clock time and date at job start Tue Mar 31 2020 20:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47127 * 2 1 4 4 H 1.09008 * 109.46754 * 305.80180 * 3 2 1 5 5 C 1.50700 * 109.47211 * 185.80364 * 3 2 1 6 6 H 1.08007 * 119.99438 * 242.30050 * 5 3 2 7 7 C 1.37871 * 120.00066 * 62.29703 * 5 3 2 8 8 N 1.31522 * 119.99895 * 194.40259 * 7 5 3 9 9 Si 1.86794 * 120.00179 * 14.40187 * 7 5 3 10 10 H 1.48502 * 109.47027 * 94.61269 * 9 7 5 11 11 H 1.48501 * 109.47142 * 214.61192 * 9 7 5 12 12 H 1.48496 * 109.47121 * 334.61289 * 9 7 5 13 13 N 1.46894 * 109.47081 * 65.79908 * 3 2 1 14 14 C 1.46897 * 111.00163 * 265.30644 * 13 3 2 15 15 C 1.50706 * 109.47654 * 180.82501 * 14 13 3 16 16 C 1.39863 * 126.04070 * 89.96700 * 15 14 13 17 17 C 1.50697 * 125.89996 * 0.02726 * 16 15 14 18 18 N 1.30837 * 108.20286 * 180.02562 * 16 15 14 19 19 N 1.40085 * 108.20286 * 0.02562 * 18 16 15 20 20 C 1.46505 * 126.03490 * 179.97438 * 19 18 16 21 21 C 1.50704 * 109.46902 * 90.02795 * 20 19 18 22 22 O 1.20825 * 119.99656 * 359.97438 * 21 20 19 23 23 O 1.34226 * 120.00355 * 179.72361 * 21 20 19 24 24 C 1.45195 * 117.00456 * 180.27510 * 23 21 20 25 25 C 1.52997 * 109.47000 * 89.99849 * 24 23 21 26 26 C 1.52994 * 109.47310 * 210.00174 * 24 23 21 27 27 C 1.34947 * 107.92939 * 0.26163 * 19 18 16 28 28 C 1.50699 * 126.13029 * 179.73613 * 27 19 18 29 29 H 1.09002 * 109.47478 * 299.11077 * 1 2 3 30 30 H 1.08998 * 109.47394 * 59.10928 * 1 2 3 31 31 H 1.08998 * 109.46980 * 179.10891 * 1 2 3 32 32 H 1.09000 * 109.46902 * 240.00105 * 2 1 3 33 33 H 1.08999 * 109.47484 * 119.99715 * 2 1 3 34 34 H 0.96993 * 119.99735 * 180.02562 * 8 7 5 35 35 H 1.00899 * 111.00007 * 29.25722 * 13 3 2 36 36 H 1.08997 * 109.47758 * 60.81944 * 14 13 3 37 37 H 1.09008 * 109.47041 * 300.82379 * 14 13 3 38 38 H 1.08997 * 109.47544 * 270.00141 * 17 16 15 39 39 H 1.09000 * 109.47217 * 30.00047 * 17 16 15 40 40 H 1.09004 * 109.47134 * 149.99966 * 17 16 15 41 41 H 1.09001 * 109.47185 * 330.02815 * 20 19 18 42 42 H 1.08999 * 109.47100 * 210.02054 * 20 19 18 43 43 H 1.08999 * 109.47021 * 330.00061 * 24 23 21 44 44 H 1.08999 * 109.47060 * 60.00236 * 25 24 23 45 45 H 1.09009 * 109.46909 * 180.02562 * 25 24 23 46 46 H 1.08994 * 109.47317 * 300.00053 * 25 24 23 47 47 H 1.09005 * 109.47307 * 59.99672 * 26 24 23 48 48 H 1.08995 * 109.47360 * 179.97438 * 26 24 23 49 49 H 1.08999 * 109.46986 * 299.99908 * 26 24 23 50 50 H 1.08999 * 109.46871 * 90.02254 * 28 27 19 51 51 H 1.09000 * 109.46749 * 210.02863 * 28 27 19 52 52 H 1.09000 * 109.46633 * 330.02325 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5942 1.9855 -0.8336 5 6 3.5401 1.4450 -0.1437 6 1 4.1573 1.8525 0.6435 7 6 4.1247 0.9270 -1.2798 8 7 5.4137 0.6662 -1.2957 9 14 3.0860 0.5956 -2.7966 10 1 3.1581 1.7636 -3.7107 11 1 3.5990 -0.6111 -3.4938 12 1 1.6753 0.3707 -2.3910 13 7 1.6679 2.0934 1.2632 14 6 0.4089 2.8369 1.1215 15 6 0.0708 3.5061 2.4288 16 6 0.4647 4.7891 2.8226 17 6 1.3020 5.7442 2.0116 18 7 -0.0194 5.0168 4.0166 19 7 -0.7372 3.8839 4.4212 20 6 -1.4402 3.7189 5.6959 21 6 -2.8606 4.2016 5.5524 22 8 -3.2459 4.6390 4.4941 23 8 -3.6991 4.1409 6.5988 24 6 -5.0540 4.6176 6.3864 25 6 -5.9336 3.4593 5.9114 26 6 -5.6099 5.1755 7.6981 27 6 -0.6615 2.9691 3.4320 28 6 -1.2847 1.5970 3.4412 29 1 -0.3634 0.5000 0.8978 30 1 -0.3634 0.5276 -0.8819 31 1 -0.3633 -1.0275 -0.0160 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8250 0.3021 -2.0951 35 1 1.6081 1.4206 2.0128 36 1 -0.3908 2.1486 0.8482 37 1 0.5190 3.5930 0.3441 38 1 2.3564 5.5839 2.2362 39 1 1.1261 5.5704 0.9501 40 1 1.0290 6.7694 2.2620 41 1 -0.9351 4.3002 6.4673 42 1 -1.4411 2.6656 5.9766 43 1 -5.0485 5.4032 5.6308 44 1 -5.9391 2.6737 6.6670 45 1 -6.9507 3.8173 5.7515 46 1 -5.5376 3.0619 4.9769 47 1 -4.9832 6.0007 8.0365 48 1 -6.6268 5.5338 7.5386 49 1 -5.6154 4.3899 8.4537 50 1 -2.2891 1.6513 3.0214 51 1 -0.6770 0.9180 2.8430 52 1 -1.3385 1.2293 4.4659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184087072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:21 Heat of formation + Delta-G solvation = -33.904080 kcal Electronic energy + Delta-G solvation = -30128.834996 eV Core-core repulsion = 26129.432687 eV Total energy + Delta-G solvation = -3999.402309 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.53932 -41.53214 -38.52165 -38.04682 -35.40293 -34.61829 -34.20220 -33.57165 -32.13566 -30.87446 -29.65180 -28.24478 -28.08673 -27.38150 -25.33240 -23.87066 -23.27084 -21.75872 -21.70179 -20.67856 -20.32596 -19.18621 -18.75389 -17.91384 -17.49000 -17.10048 -16.88338 -16.23486 -16.04850 -15.57641 -15.35366 -15.13482 -14.92807 -14.75017 -14.57578 -14.30150 -14.15866 -14.09425 -13.85836 -13.51901 -13.46160 -13.30341 -13.27373 -13.20020 -13.19105 -13.07508 -12.82252 -12.76110 -12.60151 -12.55422 -12.31825 -12.13076 -11.97419 -11.83905 -11.62388 -11.57021 -11.50751 -11.24583 -11.07274 -10.49245 -10.04171 -9.32165 -8.75110 -8.20384 -6.16498 0.64241 0.96941 1.22028 1.37367 1.42488 1.50636 1.75729 1.84019 2.41779 3.13426 3.41766 3.50919 3.68338 3.75620 3.85437 3.89345 4.00771 4.02443 4.08929 4.15999 4.22659 4.38782 4.41346 4.47544 4.56596 4.63094 4.63892 4.69923 4.71759 4.75488 4.76955 4.81274 4.85626 4.93009 4.95406 5.06315 5.08835 5.17928 5.19173 5.20846 5.24713 5.26709 5.36774 5.38721 5.61140 5.73232 5.80256 6.02405 6.16991 6.56537 6.73523 6.83927 6.89068 6.92746 7.46904 8.97161 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.002458 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.166195 B =11390.522328 C =12073.392944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 C 0.199 3.801 4 H 0.023 0.977 5 C -0.499 4.499 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.949 5.949 9 Si 0.926 3.074 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.220 1.220 13 N -0.674 5.674 14 C 0.137 3.863 15 C -0.239 4.239 16 C 0.086 3.914 17 C -0.067 4.067 18 N -0.324 5.324 19 N -0.371 5.371 20 C 0.141 3.859 21 C 0.448 3.552 22 O -0.529 6.529 23 O -0.347 6.347 24 C 0.072 3.928 25 C -0.166 4.166 26 C -0.144 4.144 27 C 0.101 3.899 28 C -0.095 4.095 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.262 0.738 35 H 0.331 0.669 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.155 0.845 42 H 0.174 0.826 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.079 0.921 50 H 0.086 0.914 51 H 0.089 0.911 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.696 3.548 18.219 31.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.190 4.190 3 C 0.089 3.911 4 H 0.041 0.959 5 C -0.537 4.537 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.590 5.590 9 Si 0.750 3.250 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.142 1.142 13 N -0.305 5.305 14 C 0.008 3.992 15 C -0.250 4.250 16 C -0.080 4.080 17 C -0.126 4.126 18 N -0.146 5.146 19 N -0.154 5.154 20 C 0.018 3.982 21 C 0.290 3.710 22 O -0.417 6.417 23 O -0.263 6.263 24 C 0.017 3.983 25 C -0.223 4.223 26 C -0.201 4.201 27 C -0.026 4.026 28 C -0.153 4.153 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.149 0.851 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.173 0.827 42 H 0.191 0.809 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.110 0.890 46 H 0.062 0.938 47 H 0.081 0.919 48 H 0.115 0.885 49 H 0.098 0.902 50 H 0.105 0.895 51 H 0.108 0.892 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -25.510 5.003 18.801 32.082 hybrid contribution -0.115 -1.049 -1.818 2.102 sum -25.624 3.955 16.983 30.995 Atomic orbital electron populations 1.22005 0.95025 1.02010 1.01782 1.22528 0.95904 0.99515 1.01038 1.19337 0.93174 0.89824 0.88734 0.95941 1.21283 0.91906 1.37543 1.02988 0.95220 1.25765 0.95856 0.95085 1.01908 1.70130 1.13278 1.46135 1.29498 0.86243 0.82092 0.77233 0.79404 1.21080 1.21671 1.14213 1.60446 1.31732 1.31700 1.06622 1.20293 0.90682 0.95994 0.92242 1.19825 1.09193 0.96349 0.99624 1.22506 0.97095 0.95838 0.92573 1.20153 0.97867 0.96323 0.98221 1.77202 1.15279 1.07072 1.15008 1.47892 1.41354 1.11368 1.14747 1.21336 0.84877 1.07844 0.84115 1.24341 0.89408 0.75126 0.82080 1.90729 1.77906 1.43076 1.30003 1.86540 1.24015 1.76472 1.39285 1.23024 0.77467 0.97352 1.00418 1.22203 1.00339 0.98316 1.01472 1.21910 1.01854 1.01783 0.94570 1.21246 0.98641 0.94248 0.88425 1.20669 1.01082 0.88306 1.05258 0.91259 0.93460 0.91721 0.93746 0.92760 0.92958 0.85083 0.93268 0.92225 0.90657 0.90316 0.90429 0.82722 0.80901 0.91789 0.90078 0.88960 0.93815 0.91914 0.88490 0.90218 0.89525 0.89240 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 8.88 71.98 0.64 -3.81 16 2 C -0.15 -5.89 4.50 30.59 0.14 -5.75 16 3 C 0.20 8.93 1.75 44.17 0.08 9.01 16 4 H 0.02 1.04 6.48 -2.38 -0.02 1.02 16 5 C -0.50 -28.54 9.31 25.60 0.24 -28.30 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 7 C 0.01 0.60 5.34 84.65 0.45 1.05 16 8 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 9 Si 0.93 43.54 25.70 68.60 1.76 45.31 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.22 -9.11 5.34 99.48 0.53 -8.57 16 13 N -0.67 -26.68 6.10 -499.45 -3.05 -29.72 16 14 C 0.14 4.60 5.00 85.56 0.43 5.03 16 15 C -0.24 -7.67 5.62 -20.14 -0.11 -7.78 16 16 C 0.09 2.91 7.22 43.10 0.31 3.22 16 17 C -0.07 -2.03 10.26 71.24 0.73 -1.30 16 18 N -0.32 -10.61 12.58 -47.39 -0.60 -11.21 16 19 N -0.37 -9.70 3.10 -338.38 -1.05 -10.75 16 20 C 0.14 2.28 6.84 85.63 0.59 2.86 16 21 C 0.45 9.09 8.00 71.24 0.57 9.66 16 22 O -0.53 -15.36 15.65 21.97 0.34 -15.02 16 23 O -0.35 -5.61 9.88 -51.38 -0.51 -6.11 16 24 C 0.07 1.00 3.18 30.59 0.10 1.10 16 25 C -0.17 -1.87 9.55 71.98 0.69 -1.18 16 26 C -0.14 -1.17 9.57 71.98 0.69 -0.48 16 27 C 0.10 2.68 6.93 41.41 0.29 2.97 16 28 C -0.10 -1.69 9.72 71.24 0.69 -1.00 16 29 H 0.07 1.78 4.28 -2.39 -0.01 1.77 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.87 4.58 -2.39 -0.01 1.86 16 33 H 0.05 2.11 8.00 -2.39 -0.02 2.10 16 34 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 35 H 0.33 12.32 8.24 -89.69 -0.74 11.58 16 36 H 0.05 1.48 4.77 -2.39 -0.01 1.47 16 37 H 0.06 2.13 7.16 -2.38 -0.02 2.11 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.08 2.34 7.26 -2.39 -0.02 2.32 16 40 H 0.08 2.06 8.14 -2.38 -0.02 2.05 16 41 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.17 1.32 7.04 -2.39 -0.02 1.30 16 43 H 0.06 1.17 7.16 -2.39 -0.02 1.16 16 44 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 46 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 48 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.09 1.64 6.34 -2.39 -0.02 1.62 16 52 H 0.10 1.12 7.07 -2.39 -0.02 1.10 16 Total: -1.00 -79.54 410.64 3.73 -75.81 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.01 Total: 26.13 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 6.51 Total: -14.68 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -4.39 Total: -111.43 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.16 Total: -21.13 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.76 Total: 45.31 kcal Total: -79.54 3.73 -75.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.903 kcal (2) G-P(sol) polarization free energy of solvation -79.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds