Wall clock time and date at job start Tue Mar 31 2020 20:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46915 * 2 1 4 4 H 1.09002 * 109.29674 * 55.42129 * 3 2 1 5 5 C 1.52917 * 109.29813 * 175.00350 * 3 2 1 6 6 C 1.53350 * 108.67329 * 170.86349 * 5 3 2 7 7 H 1.08996 * 109.67662 * 172.70297 * 6 5 3 8 8 C 1.50701 * 109.67672 * 52.19981 * 6 5 3 9 9 O 1.21282 * 120.00005 * 263.64843 * 8 6 5 10 10 N 1.34769 * 120.00031 * 83.64320 * 8 6 5 11 11 C 1.46498 * 120.00275 * 179.72885 * 10 8 6 12 12 C 1.52996 * 109.47407 * 180.02562 * 11 10 8 13 13 C 1.53039 * 109.46064 * 295.02470 * 12 11 10 14 14 C 1.53196 * 109.31391 * 178.59838 * 13 12 11 15 15 N 1.46924 * 108.76247 * 54.65603 * 14 13 12 16 16 C 1.36939 * 120.63216 * 126.36076 * 15 14 13 17 17 H 1.08009 * 119.99966 * 329.37526 * 16 15 14 18 18 C 1.38811 * 120.00337 * 149.37305 * 16 15 14 19 19 N 1.31621 * 119.99949 * 343.74124 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 163.74312 * 18 16 15 21 21 H 1.48504 * 109.47150 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47240 * 119.99617 * 20 18 16 23 23 H 1.48495 * 109.47039 * 239.99983 * 20 18 16 24 24 C 1.46923 * 118.74063 * 306.38502 * 15 14 13 25 25 C 1.53040 * 109.46260 * 174.97204 * 12 11 10 26 26 C 1.53076 * 108.42219 * 292.46569 * 6 5 3 27 27 C 1.50188 * 109.88440 * 48.91818 * 26 6 5 28 28 O 1.21272 * 118.24223 * 162.42054 * 27 26 6 29 29 N 1.33350 * 123.50617 * 342.37492 * 27 26 6 30 30 H 1.09001 * 109.46851 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47091 * 299.99359 * 1 2 3 32 32 H 1.08991 * 109.47578 * 59.99661 * 1 2 3 33 33 H 1.09000 * 109.47091 * 240.00641 * 2 1 3 34 34 H 1.08991 * 109.47578 * 120.00339 * 2 1 3 35 35 H 1.08999 * 109.60716 * 51.10420 * 5 3 2 36 36 H 1.09001 * 109.60392 * 290.61318 * 5 3 2 37 37 H 0.97002 * 120.00361 * 0.02562 * 10 8 6 38 38 H 1.09006 * 109.47147 * 300.00031 * 11 10 8 39 39 H 1.08997 * 109.47369 * 59.99870 * 11 10 8 40 40 H 1.09007 * 109.46177 * 54.99826 * 12 11 10 41 41 H 1.09000 * 109.49802 * 298.56696 * 13 12 11 42 42 H 1.08999 * 109.49773 * 58.66128 * 13 12 11 43 43 H 1.08996 * 109.60014 * 294.87019 * 14 13 12 44 44 H 1.08996 * 109.70118 * 174.50714 * 14 13 12 45 45 H 0.96997 * 120.00046 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.58483 * 293.81847 * 24 15 14 47 47 H 1.09004 * 109.70651 * 173.46597 * 24 15 14 48 48 H 1.09010 * 109.49576 * 301.33491 * 25 12 11 49 49 H 1.09001 * 109.50022 * 61.42764 * 25 12 11 50 50 H 1.08995 * 109.39812 * 169.02484 * 26 6 5 51 51 H 1.08994 * 109.40257 * 288.77364 * 26 6 5 52 52 H 0.97002 * 117.94305 * 182.24165 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6095 1.9768 0.8470 5 6 3.5639 1.4398 0.1257 6 6 4.0782 2.8660 -0.1050 7 1 5.1463 2.9099 0.1075 8 6 3.3418 3.8230 0.7966 9 8 2.3844 4.4374 0.3761 10 7 3.7471 3.9961 2.0702 11 6 3.0349 4.9308 2.9450 12 6 3.6931 4.9392 4.3261 13 6 3.5258 3.5652 4.9790 14 6 4.2162 3.5666 6.3465 15 7 3.6854 4.6814 7.1428 16 6 3.1732 4.4635 8.3939 17 1 2.6992 3.5213 8.6269 18 6 3.2631 5.4534 9.3629 19 7 4.1004 6.4564 9.2033 20 14 2.1960 5.3620 10.8934 21 1 1.3470 4.1451 10.8330 22 1 3.0622 5.3013 12.0980 23 1 1.3307 6.5667 10.9660 24 6 3.7140 6.0345 6.5710 25 6 3.0295 6.0053 5.2008 26 6 3.8274 3.2399 -1.5681 27 6 2.4089 2.9177 -1.9417 28 8 1.9461 3.4339 -2.9368 29 7 1.6314 2.0937 -1.2383 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8898 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8898 35 1 3.9914 0.7715 -0.6218 36 1 3.8480 1.1057 1.1236 37 1 4.5130 3.5049 2.4065 38 1 3.0765 5.9325 2.5170 39 1 1.9948 4.6192 3.0397 40 1 4.7545 5.1646 4.2212 41 1 2.4650 3.3500 5.1069 42 1 3.9781 2.8033 4.3442 43 1 5.2908 3.6918 6.2135 44 1 4.0187 2.6250 6.8588 45 1 4.1635 7.1479 9.8806 46 1 4.7476 6.3609 6.4563 47 1 3.1843 6.7231 7.2294 48 1 3.1285 6.9805 4.7238 49 1 1.9734 5.7670 5.3266 50 1 4.0041 4.3067 -1.7045 51 1 4.5073 2.6768 -2.2074 52 1 0.7377 1.9170 -1.5715 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330877252.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:18 Heat of formation + Delta-G solvation = -78.234309 kcal Electronic energy + Delta-G solvation = -30472.730453 eV Core-core repulsion = 26471.405841 eV Total energy + Delta-G solvation = -4001.324612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.25777 -39.30135 -37.89519 -37.13920 -35.03714 -34.22706 -32.89482 -32.24290 -30.81967 -29.80896 -29.41310 -27.26208 -25.49618 -24.17921 -23.31649 -22.27476 -21.97216 -21.18965 -20.90660 -19.50570 -18.96977 -17.57660 -16.96693 -16.65532 -16.54175 -15.83206 -15.75246 -15.27741 -14.89962 -14.63655 -14.27391 -14.12110 -14.06324 -13.87911 -13.74820 -13.56560 -13.39960 -13.15526 -12.88391 -12.48248 -12.41706 -12.30249 -12.21655 -11.88454 -11.76990 -11.61554 -11.38483 -11.34335 -11.19188 -11.02912 -10.77831 -10.56446 -10.30300 -10.23591 -10.05599 -9.90390 -9.85211 -9.60463 -9.46228 -9.21234 -9.06744 -8.51375 -6.67654 -5.83192 -3.28029 2.46292 2.61735 3.02687 3.15099 3.34048 3.42328 3.44123 4.08713 4.10967 4.17378 4.39181 4.46081 4.63155 4.68598 4.74876 4.92359 4.99531 5.05592 5.12130 5.16980 5.23838 5.30951 5.32050 5.33281 5.37261 5.48574 5.51269 5.55534 5.56825 5.72280 5.80119 5.85458 5.88619 5.97886 6.08299 6.26681 6.35122 6.39897 6.55098 6.63119 6.64111 6.70835 6.76131 6.92620 7.22972 7.30457 7.41337 7.59571 7.76716 8.10792 8.13583 8.42829 9.17892 9.80696 10.38697 11.25394 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.002364 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.964413 B =11841.802278 C =12522.196866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.134 4.134 3 C 0.137 3.863 4 H 0.077 0.923 5 C -0.121 4.121 6 C -0.115 4.115 7 H 0.108 0.892 8 C 0.509 3.491 9 O -0.532 6.532 10 N -0.721 5.721 11 C 0.123 3.877 12 C -0.090 4.090 13 C -0.126 4.126 14 C 0.145 3.855 15 N -0.592 5.592 16 C -0.255 4.255 17 H 0.064 0.936 18 C 0.005 3.995 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.288 1.288 24 C 0.174 3.826 25 C -0.133 4.133 26 C -0.117 4.117 27 C 0.537 3.463 28 O -0.564 6.564 29 N -0.708 5.708 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.400 0.600 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.052 0.948 45 H 0.253 0.747 46 H 0.018 0.982 47 H 0.083 0.917 48 H 0.050 0.950 49 H 0.057 0.943 50 H 0.105 0.895 51 H 0.106 0.894 52 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 -12.630 -19.023 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.032 3.968 4 H 0.095 0.905 5 C -0.159 4.159 6 C -0.137 4.137 7 H 0.126 0.874 8 C 0.294 3.706 9 O -0.408 6.408 10 N -0.373 5.373 11 C 0.000 4.000 12 C -0.109 4.109 13 C -0.165 4.165 14 C 0.019 3.981 15 N -0.315 5.315 16 C -0.384 4.384 17 H 0.081 0.919 18 C -0.194 4.194 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.215 1.215 24 C 0.048 3.952 25 C -0.173 4.173 26 C -0.157 4.157 27 C 0.325 3.675 28 O -0.443 6.443 29 N -0.361 5.361 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.235 0.765 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.033 0.967 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.101 0.899 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.123 0.877 51 H 0.124 0.876 52 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.462 -11.723 -19.603 22.846 hybrid contribution -0.404 -0.222 1.087 1.181 sum 0.058 -11.945 -18.517 22.035 Atomic orbital electron populations 1.21801 0.95263 1.02208 1.02172 1.21919 0.96802 0.95274 1.03259 1.21022 0.94761 0.93534 0.87514 0.90520 1.21918 0.94629 0.94869 1.04448 1.21503 1.01970 0.95281 0.94952 0.87430 1.20434 0.84748 0.82922 0.82498 1.90766 1.27576 1.47857 1.74594 1.46112 1.34238 1.45283 1.11635 1.21584 0.96224 0.92483 0.89690 1.21306 0.99840 0.97542 0.92168 1.22067 1.01427 0.94802 0.98208 1.20889 0.94586 0.92382 0.90262 1.44019 1.70474 1.02259 1.14705 1.19185 1.30196 1.01764 0.87299 0.91853 1.25111 0.97981 0.98906 0.97439 1.70033 1.35534 1.13755 1.35210 0.86253 0.80127 0.77580 0.82984 1.20223 1.21690 1.21515 1.20703 0.97011 0.87757 0.89717 1.22179 1.00430 0.96110 0.98580 1.21499 0.94386 1.05000 0.94816 1.19774 0.88202 0.77240 0.82294 1.90736 1.74333 1.51456 1.27754 1.45456 1.17978 1.47388 1.25231 0.92113 0.92138 0.92757 0.91126 0.90161 0.89438 0.88926 0.76517 0.91837 0.91677 0.91306 0.92237 0.93536 0.96654 0.92901 0.93652 0.96378 0.89893 0.93085 0.92412 0.87709 0.87574 0.76670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.75 37.16 0.36 -0.60 16 2 C -0.13 -0.75 5.57 -26.73 -0.15 -0.90 16 3 C 0.14 1.03 2.39 -68.37 -0.16 0.87 16 4 H 0.08 0.74 7.28 -51.93 -0.38 0.36 16 5 C -0.12 -0.66 4.93 -26.59 -0.13 -0.79 16 6 C -0.12 -0.82 3.07 -91.55 -0.28 -1.10 16 7 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 8 C 0.51 5.57 5.62 -10.99 -0.06 5.51 16 9 O -0.53 -8.19 14.65 5.56 0.08 -8.11 16 10 N -0.72 -7.33 5.27 -60.30 -0.32 -7.65 16 11 C 0.12 1.59 5.06 -4.05 -0.02 1.57 16 12 C -0.09 -1.30 2.19 -90.58 -0.20 -1.50 16 13 C -0.13 -1.88 5.25 -26.61 -0.14 -2.02 16 14 C 0.15 2.80 6.52 -3.71 -0.02 2.78 16 15 N -0.59 -14.17 2.98 -172.32 -0.51 -14.68 16 16 C -0.25 -6.80 9.56 -15.06 -0.14 -6.95 16 17 H 0.06 1.67 7.88 -52.48 -0.41 1.26 16 18 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 19 N -0.90 -25.69 11.34 55.49 0.63 -25.06 16 20 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.17 3.95 5.28 -3.71 -0.02 3.93 16 25 C -0.13 -2.36 5.36 -26.61 -0.14 -2.50 16 26 C -0.12 -1.04 5.21 -28.09 -0.15 -1.18 16 27 C 0.54 6.62 6.39 -11.87 -0.08 6.55 16 28 O -0.56 -9.41 17.78 5.56 0.10 -9.31 16 29 N -0.71 -7.04 4.93 -54.85 -0.27 -7.31 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.34 6.62 -51.93 -0.34 0.00 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.35 8.10 -51.93 -0.42 -0.07 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.40 3.13 7.66 -40.82 -0.31 2.82 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.54 7.16 -51.93 -0.37 0.17 16 43 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.08 2.15 6.24 -51.93 -0.32 1.82 16 48 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 51 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 52 H 0.40 3.88 6.97 -40.82 -0.28 3.60 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -34.37 399.29 -9.88 -44.25 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -9.16 Total: 1.89 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.42 Total: 3.70 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.47 Total: -54.71 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.18 Total: -17.41 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.37 -9.88 -44.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330877252.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.985 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds