Wall clock time and date at job start Tue Mar 31 2020 20:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46915 * 2 1 4 4 H 1.09002 * 109.29674 * 55.42129 * 3 2 1 5 5 C 1.52917 * 109.29813 * 175.00350 * 3 2 1 6 6 C 1.53350 * 108.67329 * 170.86349 * 5 3 2 7 7 H 1.08996 * 109.67662 * 172.70297 * 6 5 3 8 8 C 1.50701 * 109.67672 * 52.19981 * 6 5 3 9 9 O 1.21282 * 120.00005 * 263.64843 * 8 6 5 10 10 N 1.34769 * 120.00031 * 83.64320 * 8 6 5 11 11 C 1.46498 * 120.00275 * 179.72885 * 10 8 6 12 12 C 1.52996 * 109.47407 * 180.02562 * 11 10 8 13 13 C 1.53039 * 109.46064 * 295.02470 * 12 11 10 14 14 C 1.53196 * 109.31391 * 178.59838 * 13 12 11 15 15 N 1.46924 * 108.76247 * 54.65603 * 14 13 12 16 16 C 1.36939 * 120.63216 * 126.36076 * 15 14 13 17 17 H 1.08009 * 119.99966 * 329.37526 * 16 15 14 18 18 C 1.38811 * 120.00337 * 149.37305 * 16 15 14 19 19 N 1.31621 * 119.99949 * 343.74124 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 163.74312 * 18 16 15 21 21 H 1.48504 * 109.47150 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47240 * 119.99617 * 20 18 16 23 23 H 1.48495 * 109.47039 * 239.99983 * 20 18 16 24 24 C 1.46923 * 118.74063 * 306.38502 * 15 14 13 25 25 C 1.53040 * 109.46260 * 174.97204 * 12 11 10 26 26 C 1.53076 * 108.42219 * 292.46569 * 6 5 3 27 27 C 1.50188 * 109.88440 * 48.91818 * 26 6 5 28 28 O 1.21272 * 118.24223 * 162.42054 * 27 26 6 29 29 N 1.33350 * 123.50617 * 342.37492 * 27 26 6 30 30 H 1.09001 * 109.46851 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47091 * 299.99359 * 1 2 3 32 32 H 1.08991 * 109.47578 * 59.99661 * 1 2 3 33 33 H 1.09000 * 109.47091 * 240.00641 * 2 1 3 34 34 H 1.08991 * 109.47578 * 120.00339 * 2 1 3 35 35 H 1.08999 * 109.60716 * 51.10420 * 5 3 2 36 36 H 1.09001 * 109.60392 * 290.61318 * 5 3 2 37 37 H 0.97002 * 120.00361 * 0.02562 * 10 8 6 38 38 H 1.09006 * 109.47147 * 300.00031 * 11 10 8 39 39 H 1.08997 * 109.47369 * 59.99870 * 11 10 8 40 40 H 1.09007 * 109.46177 * 54.99826 * 12 11 10 41 41 H 1.09000 * 109.49802 * 298.56696 * 13 12 11 42 42 H 1.08999 * 109.49773 * 58.66128 * 13 12 11 43 43 H 1.08996 * 109.60014 * 294.87019 * 14 13 12 44 44 H 1.08996 * 109.70118 * 174.50714 * 14 13 12 45 45 H 0.96997 * 120.00046 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.58483 * 293.81847 * 24 15 14 47 47 H 1.09004 * 109.70651 * 173.46597 * 24 15 14 48 48 H 1.09010 * 109.49576 * 301.33491 * 25 12 11 49 49 H 1.09001 * 109.50022 * 61.42764 * 25 12 11 50 50 H 1.08995 * 109.39812 * 169.02484 * 26 6 5 51 51 H 1.08994 * 109.40257 * 288.77364 * 26 6 5 52 52 H 0.97002 * 117.94305 * 182.24165 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6095 1.9768 0.8470 5 6 3.5639 1.4398 0.1257 6 6 4.0782 2.8660 -0.1050 7 1 5.1463 2.9099 0.1075 8 6 3.3418 3.8230 0.7966 9 8 2.3844 4.4374 0.3761 10 7 3.7471 3.9961 2.0702 11 6 3.0349 4.9308 2.9450 12 6 3.6931 4.9392 4.3261 13 6 3.5258 3.5652 4.9790 14 6 4.2162 3.5666 6.3465 15 7 3.6854 4.6814 7.1428 16 6 3.1732 4.4635 8.3939 17 1 2.6992 3.5213 8.6269 18 6 3.2631 5.4534 9.3629 19 7 4.1004 6.4564 9.2033 20 14 2.1960 5.3620 10.8934 21 1 1.3470 4.1451 10.8330 22 1 3.0622 5.3013 12.0980 23 1 1.3307 6.5667 10.9660 24 6 3.7140 6.0345 6.5710 25 6 3.0295 6.0053 5.2008 26 6 3.8274 3.2399 -1.5681 27 6 2.4089 2.9177 -1.9417 28 8 1.9461 3.4339 -2.9368 29 7 1.6314 2.0937 -1.2383 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8898 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8898 35 1 3.9914 0.7715 -0.6218 36 1 3.8480 1.1057 1.1236 37 1 4.5130 3.5049 2.4065 38 1 3.0765 5.9325 2.5170 39 1 1.9948 4.6192 3.0397 40 1 4.7545 5.1646 4.2212 41 1 2.4650 3.3500 5.1069 42 1 3.9781 2.8033 4.3442 43 1 5.2908 3.6918 6.2135 44 1 4.0187 2.6250 6.8588 45 1 4.1635 7.1479 9.8806 46 1 4.7476 6.3609 6.4563 47 1 3.1843 6.7231 7.2294 48 1 3.1285 6.9805 4.7238 49 1 1.9734 5.7670 5.3266 50 1 4.0041 4.3067 -1.7045 51 1 4.5073 2.6768 -2.2074 52 1 0.7377 1.9170 -1.5715 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330877252.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:17 Heat of formation + Delta-G solvation = -102.719208 kcal Electronic energy + Delta-G solvation = -30473.792198 eV Core-core repulsion = 26471.405841 eV Total energy + Delta-G solvation = -4002.386357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.02770 -40.29288 -39.27963 -37.94129 -36.37678 -34.89356 -34.39473 -32.99605 -32.43772 -31.39713 -29.99825 -28.63005 -26.53308 -25.44975 -24.21314 -23.71962 -22.74029 -22.40751 -21.79676 -20.78124 -19.98369 -18.65756 -18.33244 -17.59060 -17.34469 -16.92140 -16.61601 -16.56022 -16.14544 -15.75566 -15.39550 -15.29252 -15.08936 -14.86660 -14.77107 -14.71270 -14.39571 -14.18440 -13.99811 -13.79783 -13.59717 -13.33752 -13.00195 -12.94089 -12.86012 -12.77261 -12.59325 -12.33954 -12.24466 -12.11718 -11.98884 -11.84711 -11.83502 -11.73162 -11.59357 -11.22520 -11.08226 -10.81133 -10.68663 -10.53772 -10.03167 -10.01860 -8.62329 -7.87222 -5.34237 1.44894 1.47643 1.57230 1.64657 1.74072 2.20949 2.41705 2.51125 3.27906 3.53239 3.58029 3.60213 3.73672 3.77830 3.86711 3.96183 4.02080 4.12029 4.19664 4.23390 4.45125 4.53089 4.55414 4.56712 4.62074 4.72454 4.74453 4.76781 4.79829 4.84687 4.87568 4.94478 4.95388 5.05859 5.10592 5.12508 5.17733 5.25674 5.31514 5.33092 5.38969 5.42340 5.49932 5.56310 5.67513 5.79333 5.84713 6.41880 6.44803 6.62702 7.17124 7.26803 7.32130 7.89360 8.40748 9.18845 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.002364 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.964413 B =11841.802278 C =12522.196866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.126 4.126 3 C 0.131 3.869 4 H 0.054 0.946 5 C -0.117 4.117 6 C -0.104 4.104 7 H 0.151 0.849 8 C 0.507 3.493 9 O -0.583 6.583 10 N -0.709 5.709 11 C 0.138 3.862 12 C -0.077 4.077 13 C -0.111 4.111 14 C 0.139 3.861 15 N -0.612 5.612 16 C -0.261 4.261 17 H 0.064 0.936 18 C -0.050 4.050 19 N -0.934 5.934 20 Si 0.962 3.038 21 H -0.266 1.266 22 H -0.291 1.291 23 H -0.293 1.293 24 C 0.181 3.819 25 C -0.124 4.124 26 C -0.116 4.116 27 C 0.525 3.475 28 O -0.622 6.622 29 N -0.704 5.704 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.417 0.583 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.019 0.981 44 H 0.052 0.948 45 H 0.249 0.751 46 H -0.001 1.001 47 H 0.043 0.957 48 H 0.064 0.936 49 H 0.047 0.953 50 H 0.087 0.913 51 H 0.141 0.859 52 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 -15.466 -19.833 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.164 4.164 3 C 0.026 3.974 4 H 0.072 0.928 5 C -0.155 4.155 6 C -0.125 4.125 7 H 0.169 0.831 8 C 0.294 3.706 9 O -0.462 6.462 10 N -0.361 5.361 11 C 0.014 3.986 12 C -0.096 4.096 13 C -0.150 4.150 14 C 0.014 3.986 15 N -0.336 5.336 16 C -0.391 4.391 17 H 0.082 0.918 18 C -0.245 4.245 19 N -0.580 5.580 20 Si 0.790 3.210 21 H -0.190 1.190 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.055 3.945 25 C -0.163 4.163 26 C -0.155 4.155 27 C 0.315 3.685 28 O -0.506 6.506 29 N -0.353 5.353 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.255 0.745 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.111 0.889 43 H 0.037 0.963 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.017 0.983 47 H 0.061 0.939 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.106 0.894 51 H 0.159 0.841 52 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 2.007 -14.631 -20.387 25.174 hybrid contribution -0.908 0.638 1.347 1.746 sum 1.099 -13.993 -19.040 23.654 Atomic orbital electron populations 1.21830 0.96234 1.02525 1.01220 1.21884 0.95933 0.94019 1.04582 1.21226 0.96802 0.94028 0.85312 0.92830 1.22049 0.92418 0.94040 1.06957 1.21565 1.03808 0.94860 0.92299 0.83112 1.21184 0.84099 0.82693 0.82644 1.90764 1.29985 1.49991 1.75485 1.45921 1.34338 1.44641 1.11199 1.21177 0.95598 0.92829 0.89010 1.21133 1.00053 0.96126 0.92254 1.21915 1.00572 0.96221 0.96304 1.21102 0.95028 0.90641 0.91833 1.44311 1.71017 1.03682 1.14605 1.19502 1.29587 1.01583 0.88464 0.91834 1.25825 0.99368 0.98986 1.00341 1.70172 1.37262 1.14520 1.36066 0.85290 0.78494 0.77570 0.79606 1.19033 1.21849 1.21949 1.20485 0.95762 0.86804 0.91464 1.21986 0.99461 0.98408 0.96495 1.21555 0.92538 1.04575 0.96880 1.20520 0.89748 0.76665 0.81610 1.90699 1.75795 1.53747 1.30392 1.45585 1.17596 1.46596 1.25545 0.91136 0.93292 0.93589 0.90113 0.88321 0.86805 0.86253 0.74547 0.92783 0.93048 0.90297 0.93340 0.88907 0.96299 0.92968 0.94195 0.98264 0.93880 0.91722 0.93397 0.89404 0.84104 0.77235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.75 71.98 0.70 -1.08 16 2 C -0.13 -1.04 5.57 30.60 0.17 -0.87 16 3 C 0.13 1.64 2.39 45.11 0.11 1.75 16 4 H 0.05 0.95 7.28 -2.39 -0.02 0.93 16 5 C -0.12 -0.70 4.93 30.68 0.15 -0.55 16 6 C -0.10 -1.03 3.07 -11.40 -0.03 -1.07 16 7 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 8 C 0.51 9.74 5.62 87.66 0.49 10.23 16 9 O -0.58 -17.62 14.65 -3.04 -0.04 -17.66 16 10 N -0.71 -11.86 5.27 -463.08 -2.44 -14.30 16 11 C 0.14 3.28 5.06 86.38 0.44 3.72 16 12 C -0.08 -2.05 2.19 -10.77 -0.02 -2.07 16 13 C -0.11 -2.98 5.25 30.67 0.16 -2.82 16 14 C 0.14 5.11 6.52 86.36 0.56 5.68 16 15 N -0.61 -29.39 2.98 -699.10 -2.08 -31.48 16 16 C -0.26 -14.04 9.56 84.03 0.80 -13.24 16 17 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 18 C -0.05 -2.74 4.91 84.86 0.42 -2.33 16 19 N -0.93 -54.82 11.34 21.65 0.25 -54.58 16 20 Si 0.96 44.43 29.58 68.60 2.03 46.46 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 C 0.18 8.39 5.28 86.36 0.46 8.84 16 25 C -0.12 -4.35 5.36 30.67 0.16 -4.18 16 26 C -0.12 -1.77 5.21 29.71 0.15 -1.61 16 27 C 0.53 12.70 6.39 87.72 0.56 13.26 16 28 O -0.62 -21.50 17.78 -3.01 -0.05 -21.55 16 29 N -0.70 -13.47 4.93 -446.64 -2.20 -15.67 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.57 6.62 -2.39 -0.02 0.55 16 33 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.11 0.21 8.10 -2.39 -0.02 0.19 16 36 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.42 4.27 7.66 -92.71 -0.71 3.56 16 38 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.09 1.67 7.16 -2.39 -0.02 1.66 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 45 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 46 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 47 H 0.04 2.32 6.24 -2.38 -0.01 2.30 16 48 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 49 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.09 1.68 8.10 -2.39 -0.02 1.66 16 51 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.39 7.85 6.97 -92.71 -0.65 7.21 16 Total: -1.00 -80.84 399.29 0.29 -80.54 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -0.44 Total: 14.57 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 5.28 Total: 13.66 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -6.48 Total: -116.03 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.10 Total: -39.21 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -80.84 0.29 -80.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330877252.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.178 kcal (2) G-P(sol) polarization free energy of solvation -80.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds