Wall clock time and date at job start Tue Mar 31 2020 20:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46797 * 2 1 4 4 H 1.09004 * 109.12982 * 55.52195 * 3 2 1 5 5 C 1.52919 * 109.29838 * 174.99998 * 3 2 1 6 6 C 1.53350 * 108.67231 * 171.06749 * 5 3 2 7 7 H 1.08991 * 109.67369 * 52.20144 * 6 5 3 8 8 C 1.50701 * 109.67071 * 172.73770 * 6 5 3 9 9 O 1.21277 * 120.00395 * 359.97438 * 8 6 5 10 10 N 1.34779 * 119.99546 * 179.97438 * 8 6 5 11 11 C 1.46507 * 119.99756 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46906 * 180.02562 * 11 10 8 13 13 C 1.53038 * 109.46323 * 295.07021 * 12 11 10 14 14 C 1.53188 * 109.31444 * 178.61751 * 13 12 11 15 15 N 1.46920 * 108.77940 * 54.63358 * 14 13 12 16 16 C 1.36933 * 120.63358 * 126.37173 * 15 14 13 17 17 H 1.07999 * 120.00034 * 207.70485 * 16 15 14 18 18 C 1.38813 * 120.00161 * 27.69632 * 16 15 14 19 19 N 1.31621 * 119.99765 * 17.35531 * 18 16 15 20 20 Si 1.86800 * 120.00227 * 197.35275 * 18 16 15 21 21 H 1.48502 * 109.47019 * 60.00059 * 20 18 16 22 22 H 1.48506 * 109.46958 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47039 * 299.99981 * 20 18 16 24 24 C 1.46929 * 118.73601 * 306.39155 * 15 14 13 25 25 C 1.53035 * 109.46149 * 175.00106 * 12 11 10 26 26 C 1.53079 * 108.40960 * 292.45100 * 6 5 3 27 27 C 1.50177 * 109.88971 * 48.91893 * 26 6 5 28 28 O 1.21279 * 118.24907 * 162.39569 * 27 26 6 29 29 N 1.33357 * 123.50371 * 342.41227 * 27 26 6 30 30 H 1.09004 * 109.47157 * 299.99663 * 1 2 3 31 31 H 1.08991 * 109.47347 * 59.99982 * 1 2 3 32 32 H 1.09003 * 109.46604 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47372 * 240.00163 * 2 1 3 34 34 H 1.08999 * 109.47266 * 119.99648 * 2 1 3 35 35 H 1.09000 * 109.60525 * 290.82261 * 5 3 2 36 36 H 1.08999 * 109.60504 * 51.31125 * 5 3 2 37 37 H 0.97000 * 120.00709 * 0.02562 * 10 8 6 38 38 H 1.08993 * 109.47185 * 299.99957 * 11 10 8 39 39 H 1.09001 * 109.47021 * 60.00100 * 11 10 8 40 40 H 1.09002 * 109.46131 * 55.02762 * 12 11 10 41 41 H 1.09005 * 109.49312 * 298.56900 * 13 12 11 42 42 H 1.09000 * 109.49769 * 58.66272 * 13 12 11 43 43 H 1.09002 * 109.58292 * 294.84547 * 14 13 12 44 44 H 1.09000 * 109.58685 * 174.42489 * 14 13 12 45 45 H 0.96995 * 119.99916 * 180.02562 * 19 18 16 46 46 H 1.08995 * 109.59156 * 293.82087 * 24 15 14 47 47 H 1.09000 * 109.58374 * 173.39498 * 24 15 14 48 48 H 1.09005 * 109.49594 * 301.34144 * 25 12 11 49 49 H 1.09004 * 109.49588 * 61.39676 * 25 12 11 50 50 H 1.09000 * 109.40251 * 288.78676 * 26 6 5 51 51 H 1.09006 * 109.33421 * 168.99872 * 26 6 5 52 52 H 0.97002 * 117.94225 * 182.22681 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6093 1.9737 0.8489 5 6 3.5639 1.4399 0.1258 6 6 4.0777 2.8670 -0.0999 7 1 3.5449 3.5566 0.5547 8 6 5.5547 2.9268 0.1934 9 8 6.1433 1.9278 0.5491 10 7 6.2215 4.0905 0.0604 11 6 7.6573 4.1487 0.3461 12 6 8.1649 5.5742 0.1194 13 6 8.0303 5.9339 -1.3620 14 6 8.5072 7.3733 -1.5792 15 7 9.8705 7.5052 -1.0478 16 6 10.8806 7.9954 -1.8317 17 1 11.9016 7.6962 -1.6464 18 6 10.5922 8.8766 -2.8648 19 7 9.4363 9.5057 -2.8897 20 14 11.8444 9.1696 -4.2195 21 1 12.1340 7.8880 -4.9116 22 1 11.2986 10.1473 -5.1951 23 1 13.0963 9.7070 -3.6286 24 6 10.1296 7.1009 0.3408 25 6 9.6346 5.6644 0.5365 26 6 3.8271 3.2456 -1.5618 27 6 2.4089 2.9241 -1.9369 28 8 1.9460 3.4437 -2.9301 29 7 1.6313 2.0980 -1.2359 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8481 1.1023 1.1225 36 1 3.9916 0.7744 -0.6241 37 1 5.7508 4.8896 -0.2237 38 1 7.8335 3.8613 1.3826 39 1 8.1876 3.4642 -0.3160 40 1 7.5747 6.2692 0.7167 41 1 8.6400 5.2547 -1.9580 42 1 6.9866 5.8468 -1.6641 43 1 7.8429 8.0612 -1.0560 44 1 8.5068 7.6015 -2.6451 45 1 9.2346 10.1212 -3.6117 46 1 9.5977 7.7664 1.0206 47 1 11.1998 7.1492 0.5418 48 1 9.7328 5.3855 1.5856 49 1 10.2291 4.9874 -0.0771 50 1 4.5072 2.6847 -2.2028 51 1 4.0032 4.3132 -1.6934 52 1 0.7377 1.9221 -1.5698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330877253.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:21 Heat of formation + Delta-G solvation = -80.731755 kcal Electronic energy + Delta-G solvation = -29829.509219 eV Core-core repulsion = 25828.076309 eV Total energy + Delta-G solvation = -4001.432910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.09412 -39.61277 -37.92656 -37.32517 -35.01497 -34.34736 -32.87409 -32.42446 -30.67141 -29.87211 -29.43397 -27.17479 -25.73285 -24.23723 -23.18058 -22.29867 -22.15507 -21.04640 -20.37302 -19.65365 -19.09346 -17.78232 -17.18225 -16.72414 -16.69115 -15.99112 -15.62953 -15.24349 -14.89049 -14.81342 -14.39824 -14.20321 -14.07616 -13.93272 -13.73524 -13.54191 -13.44643 -13.25336 -12.98773 -12.44793 -12.42065 -12.32757 -11.91229 -11.86333 -11.75409 -11.50238 -11.44338 -11.41162 -11.26947 -10.99183 -10.71307 -10.56112 -10.46237 -10.25516 -10.24476 -9.93221 -9.77248 -9.55393 -9.46115 -9.44930 -9.05341 -8.46850 -6.68226 -5.79454 -3.21289 2.33278 2.47346 2.89633 3.04895 3.38468 3.44499 3.45787 4.01690 4.14715 4.20180 4.32470 4.49706 4.56483 4.57489 4.67004 4.85049 4.95899 5.05253 5.09027 5.14995 5.21507 5.30893 5.32627 5.35571 5.41352 5.46083 5.49327 5.56661 5.61798 5.67987 5.79484 5.83552 5.88406 6.01950 6.12656 6.25928 6.36905 6.42734 6.48919 6.54970 6.65305 6.73904 6.79724 6.96482 6.98010 7.34302 7.42860 7.63712 7.79007 7.89161 8.09821 8.44732 9.21120 9.84720 10.41051 11.29050 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.002218 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.826414 B =12620.354595 C =13714.619713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.139 3.861 4 H 0.078 0.922 5 C -0.111 4.111 6 C -0.112 4.112 7 H 0.106 0.894 8 C 0.517 3.483 9 O -0.541 6.541 10 N -0.721 5.721 11 C 0.123 3.877 12 C -0.091 4.091 13 C -0.135 4.135 14 C 0.170 3.830 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.146 3.854 25 C -0.125 4.125 26 C -0.128 4.128 27 C 0.525 3.475 28 O -0.552 6.552 29 N -0.716 5.716 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.402 0.598 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.017 0.983 44 H 0.087 0.913 45 H 0.254 0.746 46 H 0.017 0.983 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.061 0.939 50 H 0.107 0.893 51 H 0.109 0.891 52 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.937 -17.511 9.275 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.175 4.175 3 C 0.034 3.966 4 H 0.096 0.904 5 C -0.149 4.149 6 C -0.134 4.134 7 H 0.124 0.876 8 C 0.302 3.698 9 O -0.418 6.418 10 N -0.372 5.372 11 C 0.000 4.000 12 C -0.110 4.110 13 C -0.174 4.174 14 C 0.044 3.956 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.019 3.981 25 C -0.164 4.164 26 C -0.168 4.168 27 C 0.312 3.688 28 O -0.430 6.430 29 N -0.370 5.370 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.237 0.763 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.035 0.965 44 H 0.106 0.894 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.126 0.874 51 H 0.128 0.872 52 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -16.536 -17.755 8.975 25.870 hybrid contribution 0.047 0.521 -0.904 1.045 sum -16.489 -17.235 8.071 25.180 Atomic orbital electron populations 1.21813 0.95334 1.02322 1.01924 1.21924 0.96472 0.95382 1.03672 1.21087 0.95254 0.93643 0.86637 0.90370 1.21776 0.92768 0.95264 1.05127 1.21469 0.94191 0.99972 0.97749 0.87629 1.20312 0.88672 0.83341 0.77431 1.90706 1.69630 1.34656 1.46842 1.46125 1.10793 1.11549 1.68732 1.21585 0.79273 0.98496 1.00651 1.21315 0.97463 0.93646 0.98559 1.22258 0.99271 1.01905 0.94002 1.20772 0.84764 0.89151 1.00880 1.44042 1.06525 1.73843 1.07082 1.19141 0.88695 1.20188 1.10199 0.91766 1.25030 0.97288 0.96338 1.01037 1.70018 1.23406 1.28596 1.32741 0.86377 0.80861 0.77540 0.82041 1.21042 1.21641 1.20903 1.20882 0.98247 0.91432 0.87495 1.21985 0.94563 1.00533 0.99353 1.21681 0.94179 1.05216 0.95766 1.19995 0.88062 0.78029 0.82756 1.90799 1.73894 1.51471 1.26863 1.45708 1.18124 1.47162 1.25992 0.92262 0.92758 0.92102 0.90976 0.90015 0.88620 0.90016 0.76281 0.91898 0.91549 0.91314 0.92493 0.93591 0.96538 0.89445 0.93588 0.96540 0.92748 0.92978 0.92071 0.87435 0.87221 0.76476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 9.75 37.16 0.36 -0.22 16 2 C -0.14 -0.58 5.58 -26.73 -0.15 -0.73 16 3 C 0.14 0.74 3.08 -68.38 -0.21 0.53 16 4 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 5 C -0.11 -0.76 3.98 -26.59 -0.11 -0.87 16 6 C -0.11 -0.87 2.60 -91.55 -0.24 -1.11 16 7 H 0.11 0.65 8.13 -51.93 -0.42 0.23 16 8 C 0.52 5.74 7.13 -10.98 -0.08 5.66 16 9 O -0.54 -7.90 15.90 5.56 0.09 -7.82 16 10 N -0.72 -7.94 5.19 -60.29 -0.31 -8.25 16 11 C 0.12 1.60 5.07 -4.04 -0.02 1.58 16 12 C -0.09 -1.35 2.19 -90.58 -0.20 -1.55 16 13 C -0.14 -2.35 5.25 -26.61 -0.14 -2.49 16 14 C 0.17 3.88 5.31 -3.72 -0.02 3.86 16 15 N -0.59 -14.44 2.99 -172.33 -0.52 -14.95 16 16 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 17 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 18 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 19 N -0.90 -25.95 11.19 55.49 0.62 -25.33 16 20 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16 25 C -0.12 -2.02 5.36 -26.61 -0.14 -2.16 16 26 C -0.13 -1.11 5.21 -28.10 -0.15 -1.26 16 27 C 0.52 5.38 7.71 -11.87 -0.09 5.29 16 28 O -0.55 -8.13 17.78 5.56 0.10 -8.03 16 29 N -0.72 -5.20 5.12 -54.85 -0.28 -5.48 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.21 6.63 -51.93 -0.34 -0.13 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.10 0.66 7.90 -51.93 -0.41 0.25 16 36 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 37 H 0.40 3.81 7.42 -40.82 -0.30 3.51 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.69 7.15 -51.93 -0.37 0.32 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 2.28 6.04 -51.93 -0.31 1.96 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.11 0.98 8.09 -51.93 -0.42 0.56 16 51 H 0.11 0.91 7.97 -51.93 -0.41 0.50 16 52 H 0.40 2.68 6.98 -40.82 -0.28 2.39 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -33.44 402.70 -9.86 -43.29 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -9.16 Total: 1.50 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.43 Total: 2.40 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.49 Total: -54.02 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.19 Total: -15.85 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.44 -9.86 -43.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330877253.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.438 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds