Wall clock time and date at job start Tue Mar 31 2020 20:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46797 * 2 1 4 4 H 1.09004 * 109.12982 * 55.52195 * 3 2 1 5 5 C 1.52919 * 109.29838 * 174.99998 * 3 2 1 6 6 C 1.53350 * 108.67231 * 171.06749 * 5 3 2 7 7 H 1.08991 * 109.67369 * 52.20144 * 6 5 3 8 8 C 1.50701 * 109.67071 * 172.73770 * 6 5 3 9 9 O 1.21277 * 120.00395 * 359.97438 * 8 6 5 10 10 N 1.34779 * 119.99546 * 179.97438 * 8 6 5 11 11 C 1.46507 * 119.99756 * 179.97438 * 10 8 6 12 12 C 1.53001 * 109.46906 * 180.02562 * 11 10 8 13 13 C 1.53038 * 109.46323 * 295.07021 * 12 11 10 14 14 C 1.53188 * 109.31444 * 178.61751 * 13 12 11 15 15 N 1.46920 * 108.77940 * 54.63358 * 14 13 12 16 16 C 1.36933 * 120.63358 * 126.37173 * 15 14 13 17 17 H 1.07999 * 120.00034 * 207.70485 * 16 15 14 18 18 C 1.38813 * 120.00161 * 27.69632 * 16 15 14 19 19 N 1.31621 * 119.99765 * 17.35531 * 18 16 15 20 20 Si 1.86800 * 120.00227 * 197.35275 * 18 16 15 21 21 H 1.48502 * 109.47019 * 60.00059 * 20 18 16 22 22 H 1.48506 * 109.46958 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47039 * 299.99981 * 20 18 16 24 24 C 1.46929 * 118.73601 * 306.39155 * 15 14 13 25 25 C 1.53035 * 109.46149 * 175.00106 * 12 11 10 26 26 C 1.53079 * 108.40960 * 292.45100 * 6 5 3 27 27 C 1.50177 * 109.88971 * 48.91893 * 26 6 5 28 28 O 1.21279 * 118.24907 * 162.39569 * 27 26 6 29 29 N 1.33357 * 123.50371 * 342.41227 * 27 26 6 30 30 H 1.09004 * 109.47157 * 299.99663 * 1 2 3 31 31 H 1.08991 * 109.47347 * 59.99982 * 1 2 3 32 32 H 1.09003 * 109.46604 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47372 * 240.00163 * 2 1 3 34 34 H 1.08999 * 109.47266 * 119.99648 * 2 1 3 35 35 H 1.09000 * 109.60525 * 290.82261 * 5 3 2 36 36 H 1.08999 * 109.60504 * 51.31125 * 5 3 2 37 37 H 0.97000 * 120.00709 * 0.02562 * 10 8 6 38 38 H 1.08993 * 109.47185 * 299.99957 * 11 10 8 39 39 H 1.09001 * 109.47021 * 60.00100 * 11 10 8 40 40 H 1.09002 * 109.46131 * 55.02762 * 12 11 10 41 41 H 1.09005 * 109.49312 * 298.56900 * 13 12 11 42 42 H 1.09000 * 109.49769 * 58.66272 * 13 12 11 43 43 H 1.09002 * 109.58292 * 294.84547 * 14 13 12 44 44 H 1.09000 * 109.58685 * 174.42489 * 14 13 12 45 45 H 0.96995 * 119.99916 * 180.02562 * 19 18 16 46 46 H 1.08995 * 109.59156 * 293.82087 * 24 15 14 47 47 H 1.09000 * 109.58374 * 173.39498 * 24 15 14 48 48 H 1.09005 * 109.49594 * 301.34144 * 25 12 11 49 49 H 1.09004 * 109.49588 * 61.39676 * 25 12 11 50 50 H 1.09000 * 109.40251 * 288.78676 * 26 6 5 51 51 H 1.09006 * 109.33421 * 168.99872 * 26 6 5 52 52 H 0.97002 * 117.94225 * 182.22681 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6093 1.9737 0.8489 5 6 3.5639 1.4399 0.1258 6 6 4.0777 2.8670 -0.0999 7 1 3.5449 3.5566 0.5547 8 6 5.5547 2.9268 0.1934 9 8 6.1433 1.9278 0.5491 10 7 6.2215 4.0905 0.0604 11 6 7.6573 4.1487 0.3461 12 6 8.1649 5.5742 0.1194 13 6 8.0303 5.9339 -1.3620 14 6 8.5072 7.3733 -1.5792 15 7 9.8705 7.5052 -1.0478 16 6 10.8806 7.9954 -1.8317 17 1 11.9016 7.6962 -1.6464 18 6 10.5922 8.8766 -2.8648 19 7 9.4363 9.5057 -2.8897 20 14 11.8444 9.1696 -4.2195 21 1 12.1340 7.8880 -4.9116 22 1 11.2986 10.1473 -5.1951 23 1 13.0963 9.7070 -3.6286 24 6 10.1296 7.1009 0.3408 25 6 9.6346 5.6644 0.5365 26 6 3.8271 3.2456 -1.5618 27 6 2.4089 2.9241 -1.9369 28 8 1.9460 3.4437 -2.9301 29 7 1.6313 2.0980 -1.2359 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8481 1.1023 1.1225 36 1 3.9916 0.7744 -0.6241 37 1 5.7508 4.8896 -0.2237 38 1 7.8335 3.8613 1.3826 39 1 8.1876 3.4642 -0.3160 40 1 7.5747 6.2692 0.7167 41 1 8.6400 5.2547 -1.9580 42 1 6.9866 5.8468 -1.6641 43 1 7.8429 8.0612 -1.0560 44 1 8.5068 7.6015 -2.6451 45 1 9.2346 10.1212 -3.6117 46 1 9.5977 7.7664 1.0206 47 1 11.1998 7.1492 0.5418 48 1 9.7328 5.3855 1.5856 49 1 10.2291 4.9874 -0.0771 50 1 4.5072 2.6847 -2.2028 51 1 4.0032 4.3132 -1.6934 52 1 0.7377 1.9221 -1.5698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330877253.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:20 Heat of formation + Delta-G solvation = -103.320991 kcal Electronic energy + Delta-G solvation = -29830.488762 eV Core-core repulsion = 25828.076309 eV Total energy + Delta-G solvation = -4002.412452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84278 -40.55364 -39.34229 -38.06816 -36.37305 -35.06298 -34.37447 -33.03325 -32.32287 -31.49513 -30.02508 -28.55755 -26.65962 -25.58781 -24.12098 -23.75779 -22.76028 -22.43007 -21.31303 -20.60261 -20.24559 -18.73634 -18.44958 -17.92386 -17.41399 -16.88319 -16.80360 -16.42468 -16.15969 -15.71406 -15.45438 -15.30777 -15.26404 -14.86532 -14.78113 -14.72347 -14.40530 -14.32387 -13.99222 -13.78510 -13.76491 -13.33375 -13.05980 -12.97183 -12.80279 -12.54027 -12.35594 -12.32730 -12.31123 -12.08679 -11.96769 -11.85937 -11.81618 -11.75954 -11.58165 -11.38640 -11.16300 -11.10750 -10.59349 -10.51420 -10.10438 -10.03832 -8.65897 -7.86664 -5.30626 1.46033 1.48457 1.53648 1.54923 1.60925 2.18576 2.26275 2.51603 3.27454 3.38572 3.53908 3.60963 3.71519 3.73166 3.88048 3.98074 4.03357 4.09387 4.10721 4.20524 4.32600 4.50410 4.55236 4.56369 4.57937 4.67258 4.71694 4.74951 4.77121 4.82819 4.88215 4.95206 4.98113 5.06129 5.16962 5.17815 5.19905 5.27741 5.28821 5.32743 5.43356 5.44299 5.45832 5.57945 5.67846 5.80865 5.81699 6.30023 6.40675 6.55307 7.15723 7.17029 7.22946 7.89868 8.39690 9.18988 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.002218 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.826414 B =12620.354595 C =13714.619713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.133 4.133 3 C 0.142 3.858 4 H 0.100 0.900 5 C -0.109 4.109 6 C -0.100 4.100 7 H 0.132 0.868 8 C 0.520 3.480 9 O -0.575 6.575 10 N -0.717 5.717 11 C 0.136 3.864 12 C -0.079 4.079 13 C -0.121 4.121 14 C 0.174 3.826 15 N -0.612 5.612 16 C -0.262 4.262 17 H 0.064 0.936 18 C -0.052 4.052 19 N -0.933 5.933 20 Si 0.963 3.037 21 H -0.280 1.280 22 H -0.294 1.294 23 H -0.275 1.275 24 C 0.140 3.860 25 C -0.115 4.115 26 C -0.125 4.125 27 C 0.524 3.476 28 O -0.604 6.604 29 N -0.704 5.704 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.000 1.000 44 H 0.049 0.951 45 H 0.249 0.751 46 H 0.017 0.983 47 H 0.051 0.949 48 H 0.085 0.915 49 H 0.053 0.947 50 H 0.101 0.899 51 H 0.114 0.886 52 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.786 -19.001 11.012 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.171 4.171 3 C 0.038 3.962 4 H 0.118 0.882 5 C -0.147 4.147 6 C -0.122 4.122 7 H 0.149 0.851 8 C 0.307 3.693 9 O -0.455 6.455 10 N -0.369 5.369 11 C 0.012 3.988 12 C -0.098 4.098 13 C -0.160 4.160 14 C 0.049 3.951 15 N -0.336 5.336 16 C -0.392 4.392 17 H 0.081 0.919 18 C -0.247 4.247 19 N -0.579 5.579 20 Si 0.792 3.208 21 H -0.207 1.207 22 H -0.221 1.221 23 H -0.201 1.201 24 C 0.015 3.985 25 C -0.155 4.155 26 C -0.165 4.165 27 C 0.312 3.688 28 O -0.487 6.487 29 N -0.356 5.356 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.248 0.752 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.018 0.982 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.035 0.965 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.072 0.928 50 H 0.120 0.880 51 H 0.133 0.867 52 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -17.396 -19.281 10.765 28.111 hybrid contribution 0.324 0.956 -1.365 1.698 sum -17.072 -18.325 9.400 26.751 Atomic orbital electron populations 1.21818 0.94801 1.02631 1.02142 1.21900 0.96856 0.94472 1.03854 1.21241 0.94358 0.94493 0.86138 0.88182 1.21770 0.93604 0.94339 1.05019 1.21443 0.92027 1.01270 0.97424 0.85054 1.20766 0.89703 0.82523 0.76336 1.90698 1.70585 1.35773 1.48446 1.46070 1.10064 1.12176 1.68546 1.21296 0.80274 0.96372 1.00869 1.21165 0.97001 0.95217 0.96414 1.22038 1.00231 0.97642 0.96049 1.20608 0.84211 0.92101 0.98192 1.44335 1.06450 1.74019 1.08790 1.19460 0.89464 1.19629 1.10665 0.91863 1.25747 0.99120 0.96679 1.03152 1.70166 1.25115 1.29463 1.33189 0.85404 0.78906 0.77219 0.79313 1.20660 1.22064 1.20124 1.21059 0.98399 0.93839 0.85227 1.21855 0.95014 0.97258 1.01337 1.21632 0.93115 1.05484 0.96261 1.20199 0.88564 0.77851 0.82192 1.90779 1.74936 1.53770 1.29184 1.45722 1.17925 1.45850 1.26083 0.91493 0.93084 0.91827 0.91880 0.88821 0.88078 0.91296 0.75190 0.91005 0.92763 0.90394 0.93780 0.91052 0.98229 0.93286 0.94178 0.96523 0.93072 0.89670 0.92819 0.88050 0.86739 0.76040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 9.75 71.98 0.70 -0.12 16 2 C -0.13 -0.83 5.58 30.60 0.17 -0.66 16 3 C 0.14 1.13 3.08 45.11 0.14 1.27 16 4 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 5 C -0.11 -1.24 3.98 30.68 0.12 -1.12 16 6 C -0.10 -1.31 2.60 -11.40 -0.03 -1.33 16 7 H 0.13 1.10 8.13 -2.39 -0.02 1.08 16 8 C 0.52 10.32 7.13 87.66 0.62 10.94 16 9 O -0.58 -15.72 15.90 -3.02 -0.05 -15.76 16 10 N -0.72 -13.92 5.19 -463.05 -2.40 -16.32 16 11 C 0.14 3.18 5.07 86.38 0.44 3.62 16 12 C -0.08 -2.18 2.19 -10.77 -0.02 -2.20 16 13 C -0.12 -4.09 5.25 30.67 0.16 -3.93 16 14 C 0.17 8.09 5.31 86.36 0.46 8.55 16 15 N -0.61 -30.17 2.99 -699.12 -2.09 -32.26 16 16 C -0.26 -14.41 9.58 84.03 0.81 -13.60 16 17 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 18 C -0.05 -2.89 4.91 84.86 0.42 -2.48 16 19 N -0.93 -55.15 11.19 21.65 0.24 -54.91 16 20 Si 0.96 45.21 29.59 68.60 2.03 47.24 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 C 0.14 5.54 6.52 86.36 0.56 6.11 16 25 C -0.12 -3.49 5.36 30.67 0.16 -3.33 16 26 C -0.12 -1.99 5.21 29.71 0.15 -1.83 16 27 C 0.52 10.25 7.71 87.71 0.68 10.93 16 28 O -0.60 -17.85 17.78 -3.03 -0.05 -17.90 16 29 N -0.70 -9.06 5.12 -446.64 -2.29 -11.34 16 30 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.05 0.30 6.63 -2.39 -0.02 0.29 16 32 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.10 1.11 7.90 -2.39 -0.02 1.09 16 36 H 0.07 0.99 8.11 -2.39 -0.02 0.97 16 37 H 0.41 6.61 7.42 -92.71 -0.69 5.92 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.07 2.04 7.15 -2.39 -0.02 2.02 16 43 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.05 2.64 6.04 -2.39 -0.01 2.63 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 46 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.05 2.01 7.93 -2.39 -0.02 2.00 16 48 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 49 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 50 H 0.10 1.76 8.09 -2.39 -0.02 1.75 16 51 H 0.11 1.72 7.97 -2.38 -0.02 1.70 16 52 H 0.40 4.84 6.98 -92.71 -0.65 4.20 16 Total: -1.00 -74.54 402.70 0.51 -74.04 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -0.42 Total: 16.41 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 5.54 Total: 10.82 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -6.54 Total: -114.84 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.10 Total: -33.67 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -74.54 0.51 -74.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330877253.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.286 kcal (2) G-P(sol) polarization free energy of solvation -74.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds