Wall clock time and date at job start Tue Mar 31 2020 20:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47003 * 2 1 4 4 H 1.09007 * 109.30061 * 304.58374 * 3 2 1 5 5 C 1.52923 * 109.30371 * 184.99707 * 3 2 1 6 6 C 1.53342 * 108.67443 * 189.13849 * 5 3 2 7 7 H 1.09009 * 109.66970 * 187.30189 * 6 5 3 8 8 C 1.50696 * 109.67895 * 307.79588 * 6 5 3 9 9 O 1.21283 * 119.99667 * 94.92428 * 8 6 5 10 10 N 1.34775 * 120.00307 * 274.93061 * 8 6 5 11 11 C 1.46497 * 120.00115 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.47400 * 179.97438 * 11 10 8 13 13 C 1.53041 * 109.46116 * 295.02905 * 12 11 10 14 14 C 1.53193 * 109.31140 * 178.59771 * 13 12 11 15 15 N 1.46927 * 108.76562 * 54.65891 * 14 13 12 16 16 C 1.36936 * 120.63149 * 126.35909 * 15 14 13 17 17 H 1.07994 * 119.99948 * 208.16810 * 16 15 14 18 18 C 1.38811 * 119.99814 * 28.17269 * 16 15 14 19 19 N 1.31613 * 120.00347 * 18.49445 * 18 16 15 20 20 Si 1.86799 * 119.99825 * 198.48829 * 18 16 15 21 21 H 1.48508 * 109.47000 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47038 * 120.00058 * 20 18 16 23 23 H 1.48507 * 109.47400 * 240.00242 * 20 18 16 24 24 C 1.46924 * 118.73452 * 306.37759 * 15 14 13 25 25 C 1.53039 * 109.46173 * 174.97173 * 12 11 10 26 26 C 1.53068 * 108.42427 * 67.53488 * 6 5 3 27 27 C 1.50171 * 109.88797 * 311.08024 * 26 6 5 28 28 O 1.21286 * 118.24953 * 197.58050 * 27 26 6 29 29 N 1.33356 * 123.50656 * 17.62049 * 27 26 6 30 30 H 1.09002 * 109.46887 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47034 * 299.99786 * 1 2 3 32 32 H 1.08995 * 109.47411 * 60.00278 * 1 2 3 33 33 H 1.08999 * 109.47624 * 239.99497 * 2 1 3 34 34 H 1.09003 * 109.47151 * 119.99808 * 2 1 3 35 35 H 1.08999 * 109.59934 * 69.38490 * 5 3 2 36 36 H 1.08998 * 109.60403 * 308.89879 * 5 3 2 37 37 H 0.96999 * 120.00009 * 359.97438 * 10 8 6 38 38 H 1.09002 * 109.47482 * 299.99615 * 11 10 8 39 39 H 1.09005 * 109.47369 * 59.99810 * 11 10 8 40 40 H 1.08999 * 109.45966 * 55.00162 * 12 11 10 41 41 H 1.09001 * 109.49595 * 298.56383 * 13 12 11 42 42 H 1.09003 * 109.49668 * 58.66278 * 13 12 11 43 43 H 1.09002 * 109.59871 * 294.86561 * 14 13 12 44 44 H 1.09001 * 109.58046 * 174.43567 * 14 13 12 45 45 H 0.97001 * 120.00513 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.59263 * 293.82255 * 24 15 14 47 47 H 1.09002 * 109.58747 * 173.39784 * 24 15 14 48 48 H 1.08997 * 109.50063 * 301.33989 * 25 12 11 49 49 H 1.09003 * 109.49536 * 61.40618 * 25 12 11 50 50 H 1.09000 * 109.40029 * 71.22501 * 26 6 5 51 51 H 1.09006 * 109.39769 * 190.96843 * 26 6 5 52 52 H 0.96999 * 117.94375 * 177.76016 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6095 1.9768 -0.8470 5 6 3.5640 1.4399 -0.1257 6 6 4.0781 2.8660 0.1051 7 1 5.1464 2.9098 -0.1076 8 6 3.3418 3.8230 -0.7966 9 8 2.3688 4.4178 -0.3839 10 7 3.7645 4.0177 -2.0614 11 6 3.0483 4.9477 -2.9380 12 6 3.7288 4.9840 -4.3079 13 6 5.1367 5.5662 -4.1625 14 6 5.8276 5.5686 -5.5298 15 7 4.9750 6.2840 -6.4890 16 6 5.4752 7.3234 -7.2270 17 1 4.8185 8.1121 -7.5632 18 6 6.8263 7.3632 -7.5431 19 7 7.5526 6.2683 -7.4664 20 14 7.6135 8.9707 -8.0774 21 1 6.5893 10.0461 -8.0816 22 1 8.7014 9.3275 -7.1317 23 1 8.1757 8.8166 -9.4433 24 6 3.5755 5.8633 -6.6409 25 6 2.9099 5.8574 -5.2611 26 6 3.8274 3.2398 1.5681 27 6 2.4090 2.9176 1.9418 28 8 1.9462 3.4338 2.9369 29 7 1.6314 2.0937 1.2384 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8480 1.1057 -1.1236 36 1 3.9914 0.7715 0.6217 37 1 4.5429 3.5422 -2.3913 38 1 2.0162 4.6166 -3.0534 39 1 3.0629 5.9453 -2.4990 40 1 3.7939 3.9721 -4.7079 41 1 5.0710 6.5871 -3.7861 42 1 5.7121 4.9571 -3.4654 43 1 5.9752 4.5424 -5.8666 44 1 6.7913 6.0718 -5.4513 45 1 8.4968 6.2961 -7.6869 46 1 3.5394 4.8613 -7.0683 47 1 3.0532 6.5610 -7.2955 48 1 1.9002 5.4556 -5.3459 49 1 2.8650 6.8753 -4.8739 50 1 4.5074 2.6767 2.2073 51 1 4.0042 4.3067 1.7045 52 1 0.7378 1.9169 1.5716 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330877255.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:28 Heat of formation + Delta-G solvation = -77.461256 kcal Electronic energy + Delta-G solvation = -30374.752993 eV Core-core repulsion = 26373.461903 eV Total energy + Delta-G solvation = -4001.291090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.24602 -39.28650 -37.89515 -37.13573 -35.02600 -34.21932 -32.92897 -32.25187 -30.68382 -29.91248 -29.41785 -27.25381 -25.49503 -24.18623 -23.27252 -22.29954 -21.99334 -21.18815 -20.87321 -19.50890 -18.94698 -17.57360 -16.94021 -16.68760 -16.54266 -15.87253 -15.71248 -15.22225 -14.86977 -14.66615 -14.27075 -14.11183 -14.07290 -13.86680 -13.79259 -13.57453 -13.39422 -13.06553 -12.89665 -12.48372 -12.37489 -12.34872 -12.22522 -11.86035 -11.78594 -11.61155 -11.43240 -11.36469 -11.19563 -11.04460 -10.75787 -10.56663 -10.29387 -10.25808 -9.98462 -9.89977 -9.84349 -9.59884 -9.47643 -9.21318 -9.04570 -8.50716 -6.71319 -5.83621 -3.24770 2.47932 2.62899 3.04345 3.15960 3.34299 3.42869 3.45183 4.08834 4.12413 4.18690 4.40223 4.46834 4.64068 4.66547 4.74432 4.92511 4.99231 5.06565 5.13848 5.18377 5.22609 5.29930 5.31395 5.34474 5.38302 5.49098 5.51343 5.53483 5.54295 5.70012 5.81464 5.82844 5.86216 6.00559 6.09701 6.23439 6.35743 6.46951 6.51730 6.61721 6.64351 6.70584 6.77133 6.93787 7.23113 7.29507 7.43558 7.57254 7.77075 8.12580 8.14487 8.41081 9.17529 9.81213 10.37843 11.25111 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.002270 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.283868 B =12332.781190 C =12735.387510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.135 4.135 3 C 0.138 3.862 4 H 0.076 0.924 5 C -0.120 4.120 6 C -0.116 4.116 7 H 0.108 0.892 8 C 0.510 3.490 9 O -0.533 6.533 10 N -0.721 5.721 11 C 0.124 3.876 12 C -0.090 4.090 13 C -0.135 4.135 14 C 0.172 3.828 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.146 3.854 25 C -0.125 4.125 26 C -0.117 4.117 27 C 0.538 3.462 28 O -0.564 6.564 29 N -0.708 5.708 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.401 0.599 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.017 0.983 44 H 0.084 0.916 45 H 0.253 0.747 46 H 0.017 0.983 47 H 0.054 0.946 48 H 0.051 0.949 49 H 0.060 0.940 50 H 0.107 0.893 51 H 0.105 0.895 52 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.920 -15.154 14.507 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.032 3.968 4 H 0.094 0.906 5 C -0.159 4.159 6 C -0.138 4.138 7 H 0.127 0.873 8 C 0.295 3.705 9 O -0.409 6.409 10 N -0.372 5.372 11 C 0.001 3.999 12 C -0.109 4.109 13 C -0.174 4.174 14 C 0.046 3.954 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.217 1.217 24 C 0.020 3.980 25 C -0.165 4.165 26 C -0.157 4.157 27 C 0.325 3.675 28 O -0.443 6.443 29 N -0.360 5.360 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.236 0.764 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.035 0.965 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.125 0.875 51 H 0.123 0.877 52 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -8.466 -14.393 15.156 22.551 hybrid contribution 0.615 0.475 -0.538 0.945 sum -7.852 -13.918 14.618 21.658 Atomic orbital electron populations 1.21799 0.95295 1.02168 1.02139 1.21922 0.96755 0.95343 1.03267 1.21013 0.94795 0.93427 0.87534 0.90599 1.21913 0.94574 0.94935 1.04434 1.21500 1.02101 0.95205 0.94946 0.87339 1.20428 0.84900 0.82768 0.82428 1.90759 1.26900 1.48780 1.74488 1.46100 1.32924 1.45743 1.12422 1.21560 0.95346 0.92960 0.90073 1.21302 0.96646 1.00111 0.92813 1.22253 0.94574 0.99881 1.00681 1.20739 0.94749 0.95353 0.84583 1.44058 1.06070 1.37684 1.43701 1.19219 0.92662 0.98342 1.27931 0.91690 1.25023 0.98159 0.96827 0.99628 1.70051 1.07005 1.25303 1.52294 0.86267 0.79308 0.83650 0.77827 1.20232 1.21547 1.21730 1.20883 0.86852 0.97310 0.92979 1.21988 0.97292 0.99313 0.97881 1.21500 0.94342 1.05066 0.94827 1.19782 0.88206 0.77203 0.82267 1.90740 1.74333 1.51446 1.27747 1.45443 1.17950 1.47431 1.25224 0.92135 0.92732 0.92213 0.90218 0.91090 0.88968 0.89418 0.76375 0.92046 0.91644 0.91333 0.92503 0.93614 0.96509 0.89750 0.93721 0.96534 0.92734 0.92988 0.92074 0.87533 0.87671 0.76717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.75 37.16 0.36 -0.51 16 2 C -0.13 -0.71 5.57 -26.73 -0.15 -0.86 16 3 C 0.14 1.01 2.38 -68.37 -0.16 0.85 16 4 H 0.08 0.70 7.25 -51.93 -0.38 0.32 16 5 C -0.12 -0.68 4.93 -26.59 -0.13 -0.81 16 6 C -0.12 -0.88 3.07 -91.56 -0.28 -1.16 16 7 H 0.11 0.56 8.14 -51.92 -0.42 0.13 16 8 C 0.51 5.75 5.65 -10.99 -0.06 5.69 16 9 O -0.53 -8.26 14.56 5.56 0.08 -8.18 16 10 N -0.72 -7.66 5.27 -60.30 -0.32 -7.98 16 11 C 0.12 1.60 5.06 -4.04 -0.02 1.58 16 12 C -0.09 -1.30 2.19 -90.58 -0.20 -1.50 16 13 C -0.13 -2.28 5.25 -26.61 -0.14 -2.42 16 14 C 0.17 3.81 5.31 -3.71 -0.02 3.80 16 15 N -0.59 -14.24 2.99 -172.32 -0.52 -14.75 16 16 C -0.25 -6.76 9.57 -15.06 -0.14 -6.91 16 17 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 18 C 0.00 0.06 4.87 -17.43 -0.08 -0.03 16 19 N -0.90 -25.51 11.30 55.49 0.63 -24.88 16 20 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.15 2.91 6.52 -3.71 -0.02 2.88 16 25 C -0.12 -2.00 5.36 -26.61 -0.14 -2.15 16 26 C -0.12 -1.09 5.22 -28.10 -0.15 -1.24 16 27 C 0.54 6.71 6.38 -11.87 -0.08 6.63 16 28 O -0.56 -9.48 17.78 5.55 0.10 -9.38 16 29 N -0.71 -6.98 4.90 -54.85 -0.27 -7.25 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.32 6.62 -51.93 -0.34 -0.02 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.37 8.10 -51.93 -0.42 -0.05 16 37 H 0.40 3.47 7.65 -40.82 -0.31 3.16 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.66 7.15 -51.93 -0.37 0.29 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 2.14 6.11 -51.93 -0.32 1.83 16 45 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 51 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 52 H 0.40 3.81 6.97 -40.82 -0.28 3.52 16 LS Contribution 399.03 15.07 6.01 6.01 Total: -1.00 -34.26 399.03 -9.88 -44.14 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -9.15 Total: 2.11 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -1.42 Total: 3.86 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.47 Total: -54.86 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.18 Total: -17.56 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.26 -9.88 -44.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330877255.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.318 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds