Wall clock time and date at job start Tue Mar 31 2020 20:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47003 * 2 1 4 4 H 1.09007 * 109.30061 * 304.58374 * 3 2 1 5 5 C 1.52923 * 109.30371 * 184.99707 * 3 2 1 6 6 C 1.53342 * 108.67443 * 189.13849 * 5 3 2 7 7 H 1.09009 * 109.66970 * 187.30189 * 6 5 3 8 8 C 1.50696 * 109.67895 * 307.79588 * 6 5 3 9 9 O 1.21283 * 119.99667 * 94.92428 * 8 6 5 10 10 N 1.34775 * 120.00307 * 274.93061 * 8 6 5 11 11 C 1.46497 * 120.00115 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.47400 * 179.97438 * 11 10 8 13 13 C 1.53041 * 109.46116 * 295.02905 * 12 11 10 14 14 C 1.53193 * 109.31140 * 178.59771 * 13 12 11 15 15 N 1.46927 * 108.76562 * 54.65891 * 14 13 12 16 16 C 1.36936 * 120.63149 * 126.35909 * 15 14 13 17 17 H 1.07994 * 119.99948 * 208.16810 * 16 15 14 18 18 C 1.38811 * 119.99814 * 28.17269 * 16 15 14 19 19 N 1.31613 * 120.00347 * 18.49445 * 18 16 15 20 20 Si 1.86799 * 119.99825 * 198.48829 * 18 16 15 21 21 H 1.48508 * 109.47000 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47038 * 120.00058 * 20 18 16 23 23 H 1.48507 * 109.47400 * 240.00242 * 20 18 16 24 24 C 1.46924 * 118.73452 * 306.37759 * 15 14 13 25 25 C 1.53039 * 109.46173 * 174.97173 * 12 11 10 26 26 C 1.53068 * 108.42427 * 67.53488 * 6 5 3 27 27 C 1.50171 * 109.88797 * 311.08024 * 26 6 5 28 28 O 1.21286 * 118.24953 * 197.58050 * 27 26 6 29 29 N 1.33356 * 123.50656 * 17.62049 * 27 26 6 30 30 H 1.09002 * 109.46887 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47034 * 299.99786 * 1 2 3 32 32 H 1.08995 * 109.47411 * 60.00278 * 1 2 3 33 33 H 1.08999 * 109.47624 * 239.99497 * 2 1 3 34 34 H 1.09003 * 109.47151 * 119.99808 * 2 1 3 35 35 H 1.08999 * 109.59934 * 69.38490 * 5 3 2 36 36 H 1.08998 * 109.60403 * 308.89879 * 5 3 2 37 37 H 0.96999 * 120.00009 * 359.97438 * 10 8 6 38 38 H 1.09002 * 109.47482 * 299.99615 * 11 10 8 39 39 H 1.09005 * 109.47369 * 59.99810 * 11 10 8 40 40 H 1.08999 * 109.45966 * 55.00162 * 12 11 10 41 41 H 1.09001 * 109.49595 * 298.56383 * 13 12 11 42 42 H 1.09003 * 109.49668 * 58.66278 * 13 12 11 43 43 H 1.09002 * 109.59871 * 294.86561 * 14 13 12 44 44 H 1.09001 * 109.58046 * 174.43567 * 14 13 12 45 45 H 0.97001 * 120.00513 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.59263 * 293.82255 * 24 15 14 47 47 H 1.09002 * 109.58747 * 173.39784 * 24 15 14 48 48 H 1.08997 * 109.50063 * 301.33989 * 25 12 11 49 49 H 1.09003 * 109.49536 * 61.40618 * 25 12 11 50 50 H 1.09000 * 109.40029 * 71.22501 * 26 6 5 51 51 H 1.09006 * 109.39769 * 190.96843 * 26 6 5 52 52 H 0.96999 * 117.94375 * 177.76016 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6095 1.9768 -0.8470 5 6 3.5640 1.4399 -0.1257 6 6 4.0781 2.8660 0.1051 7 1 5.1464 2.9098 -0.1076 8 6 3.3418 3.8230 -0.7966 9 8 2.3688 4.4178 -0.3839 10 7 3.7645 4.0177 -2.0614 11 6 3.0483 4.9477 -2.9380 12 6 3.7288 4.9840 -4.3079 13 6 5.1367 5.5662 -4.1625 14 6 5.8276 5.5686 -5.5298 15 7 4.9750 6.2840 -6.4890 16 6 5.4752 7.3234 -7.2270 17 1 4.8185 8.1121 -7.5632 18 6 6.8263 7.3632 -7.5431 19 7 7.5526 6.2683 -7.4664 20 14 7.6135 8.9707 -8.0774 21 1 6.5893 10.0461 -8.0816 22 1 8.7014 9.3275 -7.1317 23 1 8.1757 8.8166 -9.4433 24 6 3.5755 5.8633 -6.6409 25 6 2.9099 5.8574 -5.2611 26 6 3.8274 3.2398 1.5681 27 6 2.4090 2.9176 1.9418 28 8 1.9462 3.4338 2.9369 29 7 1.6314 2.0937 1.2384 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8480 1.1057 -1.1236 36 1 3.9914 0.7715 0.6217 37 1 4.5429 3.5422 -2.3913 38 1 2.0162 4.6166 -3.0534 39 1 3.0629 5.9453 -2.4990 40 1 3.7939 3.9721 -4.7079 41 1 5.0710 6.5871 -3.7861 42 1 5.7121 4.9571 -3.4654 43 1 5.9752 4.5424 -5.8666 44 1 6.7913 6.0718 -5.4513 45 1 8.4968 6.2961 -7.6869 46 1 3.5394 4.8613 -7.0683 47 1 3.0532 6.5610 -7.2955 48 1 1.9002 5.4556 -5.3459 49 1 2.8650 6.8753 -4.8739 50 1 4.5074 2.6767 2.2073 51 1 4.0042 4.3067 1.7045 52 1 0.7378 1.9169 1.5716 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330877255.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:26 Heat of formation + Delta-G solvation = -101.571016 kcal Electronic energy + Delta-G solvation = -30375.798471 eV Core-core repulsion = 26373.461903 eV Total energy + Delta-G solvation = -4002.336568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.03511 -40.29506 -39.28613 -37.94219 -36.37033 -34.90295 -34.43846 -32.99522 -32.31051 -31.50415 -30.00639 -28.62446 -26.53905 -25.44538 -24.17427 -23.78288 -22.73712 -22.39243 -21.78427 -20.80083 -19.96917 -18.68323 -18.33404 -17.61509 -17.34195 -16.83990 -16.73788 -16.54075 -16.13755 -15.70449 -15.45784 -15.29768 -15.04213 -14.92564 -14.76044 -14.71783 -14.40299 -14.15589 -13.96741 -13.81922 -13.57824 -13.31247 -13.05121 -12.97495 -12.90788 -12.78518 -12.57419 -12.34074 -12.26504 -12.12568 -11.94850 -11.84665 -11.82812 -11.73382 -11.58973 -11.22039 -11.10592 -10.81445 -10.68353 -10.52681 -10.03476 -10.01317 -8.65520 -7.87625 -5.30775 1.44654 1.47799 1.57327 1.63180 1.73321 2.21151 2.41292 2.51396 3.26602 3.52230 3.57033 3.59389 3.73206 3.76948 3.87309 3.97409 4.00374 4.10498 4.19704 4.22540 4.44994 4.53215 4.54947 4.57224 4.60622 4.70550 4.74997 4.75706 4.78408 4.83063 4.87176 4.93667 4.94616 5.05935 5.09626 5.12758 5.19404 5.25869 5.27925 5.32053 5.39496 5.43890 5.47005 5.57853 5.68466 5.81705 5.85366 6.40858 6.43705 6.60832 7.17325 7.26323 7.30012 7.89674 8.39610 9.18453 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.002270 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.283868 B =12332.781190 C =12735.387510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.127 4.127 3 C 0.132 3.868 4 H 0.057 0.943 5 C -0.117 4.117 6 C -0.106 4.106 7 H 0.146 0.854 8 C 0.508 3.492 9 O -0.581 6.581 10 N -0.711 5.711 11 C 0.138 3.862 12 C -0.076 4.076 13 C -0.120 4.120 14 C 0.176 3.824 15 N -0.613 5.613 16 C -0.262 4.262 17 H 0.060 0.940 18 C -0.048 4.048 19 N -0.930 5.930 20 Si 0.960 3.040 21 H -0.271 1.271 22 H -0.289 1.289 23 H -0.291 1.291 24 C 0.141 3.859 25 C -0.117 4.117 26 C -0.116 4.116 27 C 0.527 3.473 28 O -0.622 6.622 29 N -0.702 5.702 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.415 0.585 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.040 0.960 42 H 0.076 0.924 43 H 0.004 0.996 44 H 0.047 0.953 45 H 0.250 0.750 46 H 0.019 0.981 47 H 0.048 0.952 48 H 0.082 0.918 49 H 0.049 0.951 50 H 0.140 0.860 51 H 0.086 0.914 52 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.446 -17.142 14.821 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.164 4.164 3 C 0.027 3.973 4 H 0.075 0.925 5 C -0.154 4.154 6 C -0.128 4.128 7 H 0.164 0.836 8 C 0.295 3.705 9 O -0.460 6.460 10 N -0.363 5.363 11 C 0.013 3.987 12 C -0.095 4.095 13 C -0.159 4.159 14 C 0.051 3.949 15 N -0.337 5.337 16 C -0.393 4.393 17 H 0.078 0.922 18 C -0.243 4.243 19 N -0.576 5.576 20 Si 0.788 3.212 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.219 1.219 24 C 0.016 3.984 25 C -0.156 4.156 26 C -0.156 4.156 27 C 0.316 3.684 28 O -0.506 6.506 29 N -0.352 5.352 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.252 0.748 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.022 0.978 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.037 0.963 47 H 0.067 0.933 48 H 0.100 0.900 49 H 0.068 0.932 50 H 0.158 0.842 51 H 0.104 0.896 52 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -7.993 -16.425 15.429 23.911 hybrid contribution 0.375 1.075 -0.699 1.336 sum -7.618 -15.349 14.730 22.597 Atomic orbital electron populations 1.21825 0.96006 1.02560 1.01324 1.21886 0.96107 0.93914 1.04539 1.21223 0.96523 0.94105 0.85406 0.92526 1.22036 0.92718 0.93848 1.06838 1.21561 1.03676 0.95115 0.92418 0.83621 1.21124 0.84304 0.82544 0.82539 1.90754 1.29174 1.50765 1.75324 1.45974 1.33070 1.45156 1.12122 1.21220 0.95569 0.92720 0.89151 1.21144 0.94743 1.00114 0.93524 1.22040 0.96104 0.99926 0.97818 1.20595 0.93700 0.93641 0.86969 1.44353 1.07734 1.37533 1.44047 1.19486 0.92986 0.99135 1.27658 0.92179 1.25694 0.98670 0.99481 1.00496 1.70171 1.06903 1.26873 1.53690 0.85327 0.78302 0.80470 0.77069 1.19533 1.21607 1.21853 1.21036 0.84978 0.96988 0.95385 1.21864 0.98696 0.99420 0.95645 1.21546 0.92771 1.04485 0.96828 1.20451 0.89619 0.76726 0.81628 1.90702 1.75743 1.53767 1.30363 1.45556 1.17573 1.46531 1.25527 0.91123 0.93627 0.93019 0.88309 0.90277 0.86377 0.86947 0.74763 0.91712 0.93515 0.89934 0.94124 0.90510 0.97809 0.93474 0.94089 0.96290 0.93330 0.89971 0.93195 0.84246 0.89556 0.77122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.75 71.98 0.70 -0.86 16 2 C -0.13 -0.96 5.57 30.59 0.17 -0.79 16 3 C 0.13 1.62 2.38 45.10 0.11 1.73 16 4 H 0.06 0.94 7.25 -2.38 -0.02 0.93 16 5 C -0.12 -0.80 4.93 30.68 0.15 -0.64 16 6 C -0.11 -1.22 3.07 -11.40 -0.03 -1.26 16 7 H 0.15 0.69 8.14 -2.38 -0.02 0.67 16 8 C 0.51 10.29 5.65 87.66 0.50 10.78 16 9 O -0.58 -17.67 14.56 -3.04 -0.04 -17.72 16 10 N -0.71 -12.92 5.27 -463.06 -2.44 -15.36 16 11 C 0.14 3.24 5.06 86.38 0.44 3.68 16 12 C -0.08 -2.03 2.19 -10.77 -0.02 -2.05 16 13 C -0.12 -3.87 5.25 30.67 0.16 -3.71 16 14 C 0.18 7.85 5.31 86.36 0.46 8.31 16 15 N -0.61 -29.62 2.99 -699.09 -2.09 -31.71 16 16 C -0.26 -14.25 9.57 84.03 0.80 -13.45 16 17 H 0.06 3.24 7.89 -2.91 -0.02 3.22 16 18 C -0.05 -2.62 4.87 84.86 0.41 -2.21 16 19 N -0.93 -53.54 11.30 21.65 0.24 -53.30 16 20 Si 0.96 44.40 29.59 68.60 2.03 46.43 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 C 0.14 5.53 6.52 86.36 0.56 6.09 16 25 C -0.12 -3.54 5.36 30.67 0.16 -3.37 16 26 C -0.12 -1.94 5.22 29.70 0.16 -1.79 16 27 C 0.53 12.98 6.38 87.71 0.56 13.54 16 28 O -0.62 -21.71 17.78 -3.05 -0.05 -21.76 16 29 N -0.70 -13.35 4.90 -446.63 -2.19 -15.54 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.04 0.52 6.62 -2.39 -0.02 0.50 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.11 0.33 8.10 -2.39 -0.02 0.31 16 37 H 0.42 5.37 7.65 -92.71 -0.71 4.66 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.08 1.99 7.15 -2.39 -0.02 1.98 16 43 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.05 2.44 6.11 -2.39 -0.01 2.43 16 45 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 48 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 50 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.09 1.79 8.10 -2.38 -0.02 1.77 16 52 H 0.39 7.67 6.97 -92.71 -0.65 7.03 16 Total: -1.00 -79.10 399.03 0.30 -78.80 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -0.44 Total: 16.17 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 5.29 Total: 13.99 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -6.48 Total: -115.91 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.10 Total: -39.48 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -79.10 0.30 -78.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330877255.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.767 kcal (2) G-P(sol) polarization free energy of solvation -79.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds