Wall clock time and date at job start Tue Mar 31 2020 20:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47187 * 2 1 4 4 H 1.09000 * 109.46784 * 181.81098 * 3 2 1 5 5 C 1.50700 * 109.47106 * 301.80876 * 3 2 1 6 6 O 1.21282 * 120.00168 * 97.68999 * 5 3 2 7 7 N 1.34778 * 120.00080 * 277.69429 * 5 3 2 8 8 C 1.46503 * 120.00021 * 5.04831 * 7 5 3 9 9 C 1.50700 * 109.46380 * 95.86234 * 8 7 5 10 10 H 1.07997 * 120.00559 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99352 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99854 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00203 * 0.02562 * 11 9 8 14 14 H 1.48509 * 109.47148 * 89.99701 * 13 11 9 15 15 H 1.48502 * 109.47293 * 209.99564 * 13 11 9 16 16 H 1.48493 * 109.47207 * 329.99913 * 13 11 9 17 17 C 1.46499 * 119.99858 * 185.05332 * 7 5 3 18 18 C 1.53009 * 109.47229 * 94.10451 * 17 7 5 19 19 C 1.47194 * 109.47168 * 184.87763 * 18 17 7 20 20 N 7.89540 * 90.14087 * 315.14421 * 2 1 3 21 21 N 1.46900 * 109.47453 * 61.80843 * 3 2 1 22 22 C 1.47021 * 111.03203 * 53.59217 * 21 3 2 23 23 C 1.53098 * 109.29068 * 182.35119 * 22 21 3 24 24 O 1.43016 * 109.25969 * 303.17137 * 23 22 21 25 25 C 1.43013 * 113.73861 * 58.67064 * 24 23 22 26 26 H 1.09002 * 109.50708 * 61.26309 * 25 24 23 27 27 C 1.52992 * 109.51073 * 181.39695 * 25 24 23 28 28 C 1.53000 * 109.46938 * 294.78483 * 27 25 24 29 29 C 1.47012 * 111.00204 * 177.24501 * 21 3 2 30 30 H 1.09000 * 109.46667 * 56.20573 * 1 2 3 31 31 H 1.08997 * 109.47182 * 176.20699 * 1 2 3 32 32 H 1.09004 * 109.47031 * 296.20652 * 1 2 3 33 33 H 1.08995 * 109.46843 * 239.99651 * 2 1 3 34 34 H 1.08999 * 109.46716 * 119.99814 * 2 1 3 35 35 H 1.08991 * 109.46971 * 215.86323 * 8 7 5 36 36 H 1.09001 * 109.46743 * 335.86760 * 8 7 5 37 37 H 0.97001 * 120.00095 * 180.02562 * 12 11 9 38 38 H 1.08995 * 109.47265 * 214.10134 * 17 7 5 39 39 H 1.09000 * 109.47513 * 334.10408 * 17 7 5 40 40 H 1.09000 * 109.46874 * 304.88280 * 18 17 7 41 41 H 1.09007 * 109.46667 * 64.87840 * 18 17 7 42 42 H 1.09001 * 109.47105 * 62.41358 * 22 21 3 43 43 H 1.09003 * 109.54148 * 302.32528 * 22 21 3 44 44 H 1.09001 * 109.50736 * 183.23720 * 23 22 21 45 45 H 1.08996 * 109.50695 * 63.10754 * 23 22 21 46 46 H 1.09002 * 109.46810 * 54.77835 * 27 25 24 47 47 H 1.08996 * 109.47696 * 174.78420 * 27 25 24 48 48 H 1.08999 * 109.47170 * 179.97438 * 28 27 25 49 49 H 1.09000 * 109.47508 * 299.99667 * 28 27 25 50 50 H 1.09007 * 109.47396 * 59.99621 * 28 27 25 51 51 H 1.09009 * 109.50285 * 57.67778 * 29 21 3 52 52 H 1.08993 * 109.51019 * 297.59105 * 29 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1296 1.4425 -0.0325 5 6 1.5015 2.1657 -1.2074 6 8 0.5182 2.8683 -1.1049 7 7 2.1123 2.0317 -2.4013 8 6 3.2316 1.0983 -2.5508 9 6 2.7226 -0.2140 -3.0892 10 1 1.6709 -0.3400 -3.2995 11 6 3.6001 -1.2534 -3.3144 12 7 3.1559 -2.3989 -3.7839 13 14 5.4195 -1.0353 -2.9514 14 1 5.6956 -1.4345 -1.5479 15 1 6.2137 -1.8863 -3.8735 16 1 5.7954 0.3883 -3.1441 17 6 1.6572 2.8195 -3.5495 18 6 2.4922 4.0974 -3.6545 19 6 1.9601 4.9437 -4.7349 20 7 1.5495 5.5969 -5.5688 21 7 1.5865 2.1223 1.2207 22 6 1.9643 1.3608 2.4202 23 6 1.4227 2.0727 3.6627 24 8 1.9207 3.4130 3.6931 25 6 1.5698 4.1838 2.5407 26 1 0.4848 4.2623 2.4718 27 6 2.1778 5.5829 2.6573 28 6 1.5421 6.3183 3.8388 29 6 2.1130 3.4933 1.2868 30 1 -0.3633 0.5716 -0.8540 31 1 -0.3633 -1.0254 -0.0680 32 1 -0.3633 0.4538 0.9221 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.9629 1.5159 -3.2427 36 1 3.7009 0.9355 -1.5805 37 1 3.7732 -3.1303 -3.9420 38 1 1.7735 2.2336 -4.4612 39 1 0.6074 3.0813 -3.4174 40 1 2.4452 4.6406 -2.7107 41 1 3.5280 3.8375 -3.8731 42 1 3.0507 1.2961 2.4822 43 1 1.5426 0.3573 2.3628 44 1 1.7494 1.5426 4.5573 45 1 0.3335 2.0898 3.6265 46 1 3.2528 5.4997 2.8171 47 1 1.9889 6.1389 1.7391 48 1 1.9756 7.3149 3.9222 49 1 0.4671 6.4016 3.6791 50 1 1.7310 5.7623 4.7571 51 1 1.7992 4.0468 0.4017 52 1 3.2016 3.4634 1.3304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339250709.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:47 Heat of formation + Delta-G solvation = -49.893348 kcal Electronic energy + Delta-G solvation = -31627.737870 eV Core-core repulsion = 27627.642214 eV Total energy + Delta-G solvation = -4000.095656 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.38667 -39.07427 -36.89716 -36.06273 -35.31201 -34.02182 -33.00176 -32.43917 -31.24663 -29.99033 -28.08166 -27.82800 -25.56375 -24.33514 -23.54335 -22.67192 -22.05900 -20.87006 -20.19973 -18.23391 -17.57791 -17.11855 -16.61612 -16.55296 -16.41419 -15.60917 -15.21517 -14.99452 -14.88245 -14.62189 -14.28834 -14.00085 -13.88303 -13.74929 -13.56396 -13.29133 -13.00061 -12.80354 -12.70717 -12.51318 -12.33952 -12.30101 -11.99607 -11.92246 -11.75078 -11.59906 -11.35189 -11.18717 -11.12175 -11.10992 -11.00859 -10.87344 -10.74253 -10.61314 -10.39685 -10.35044 -10.24809 -9.72835 -9.56396 -9.07802 -8.83473 -8.14744 -7.98086 -6.32401 -4.34272 2.75403 2.87184 3.07753 3.14611 3.17132 3.18787 3.38510 3.72970 3.93675 4.15604 4.29147 4.71674 4.89955 4.95550 4.98582 5.01024 5.07069 5.17514 5.22123 5.24823 5.26538 5.31230 5.38338 5.47058 5.50051 5.53791 5.65914 5.67299 5.79268 5.83006 5.84704 5.87053 5.93649 5.99315 6.06421 6.10717 6.19673 6.20777 6.28248 6.32565 6.47574 6.51626 6.77387 6.89387 7.01415 7.09001 7.18429 7.22777 7.31155 7.63477 7.92836 8.27715 8.71193 8.78920 9.25757 10.79545 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008862 B = 0.004520 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.841554 B = 6192.902239 C = 8068.104475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.075 3.925 4 H 0.061 0.939 5 C 0.530 3.470 6 O -0.542 6.542 7 N -0.592 5.592 8 C 0.204 3.796 9 C -0.541 4.541 10 H 0.082 0.918 11 C 0.080 3.920 12 N -0.885 5.885 13 Si 0.866 3.134 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.264 1.264 17 C 0.124 3.876 18 C -0.045 4.045 19 C 0.220 3.780 20 N -0.446 5.446 21 N -0.512 5.512 22 C 0.014 3.986 23 C 0.068 3.932 24 O -0.384 6.384 25 C 0.098 3.902 26 H 0.068 0.932 27 C -0.116 4.116 28 C -0.147 4.147 29 C 0.023 3.977 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.268 0.732 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.040 0.960 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.052 0.948 50 H 0.060 0.940 51 H 0.092 0.908 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 9.190 13.062 16.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C -0.036 4.036 4 H 0.079 0.921 5 C 0.317 3.683 6 O -0.419 6.419 7 N -0.324 5.324 8 C 0.083 3.917 9 C -0.579 4.579 10 H 0.100 0.900 11 C -0.125 4.125 12 N -0.522 5.522 13 Si 0.692 3.308 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.188 1.188 17 C -0.001 4.001 18 C -0.086 4.086 19 C -0.098 4.098 20 N -0.124 5.124 21 N -0.237 5.237 22 C -0.114 4.114 23 C -0.009 4.009 24 O -0.303 6.303 25 C 0.040 3.960 26 H 0.086 0.914 27 C -0.153 4.153 28 C -0.204 4.204 29 C -0.105 4.105 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.132 0.868 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.058 0.942 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.110 0.890 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.410 10.429 11.933 15.853 hybrid contribution 2.116 -0.727 0.123 2.241 sum 1.706 9.702 12.056 15.569 Atomic orbital electron populations 1.21585 0.95012 1.00495 1.02219 1.21831 0.97388 0.92467 1.04884 1.21647 0.97956 0.95597 0.88389 0.92111 1.20167 0.83246 0.80808 0.84080 1.90626 1.25305 1.40824 1.85191 1.47863 1.35182 1.41019 1.08290 1.19938 0.84975 0.89287 0.97528 1.21299 0.97196 0.94784 1.44629 0.89962 1.24858 0.98355 0.94984 0.94268 1.69879 1.35443 1.03286 1.43563 0.87019 0.85895 0.78935 0.78956 1.19841 1.20832 1.18825 1.21124 0.98490 0.89616 0.90859 1.19762 1.01475 0.94469 0.92893 1.29044 0.93231 0.93567 0.94003 1.81192 1.09365 1.10569 1.11239 1.61883 1.59560 1.01491 1.00780 1.22881 0.99043 0.98987 0.90474 1.22612 0.98649 0.82604 0.97066 1.87931 1.77193 1.23511 1.41703 1.22158 0.99069 0.90552 0.84256 0.91419 1.21516 1.00809 0.93474 0.99544 1.21691 1.00489 0.99605 0.98663 1.22842 0.97198 0.90620 0.99876 0.92584 0.93564 0.92733 0.86754 0.91973 0.94808 0.94944 0.92232 0.88977 0.89498 0.87637 0.87176 0.94157 0.88801 0.88718 0.92360 0.91343 0.90516 0.92931 0.92854 0.92053 0.89011 0.94616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.47 37.16 0.35 -1.88 16 2 C -0.13 -2.11 5.12 -26.73 -0.14 -2.25 16 3 C 0.07 1.19 1.35 -68.87 -0.09 1.10 16 4 H 0.06 0.97 6.36 -51.93 -0.33 0.64 16 5 C 0.53 9.18 4.84 -10.98 -0.05 9.13 16 6 O -0.54 -10.34 14.34 5.56 0.08 -10.26 16 7 N -0.59 -10.07 2.46 -175.06 -0.43 -10.50 16 8 C 0.20 3.83 3.86 -5.19 -0.02 3.81 16 9 C -0.54 -12.55 7.88 -34.44 -0.27 -12.82 16 10 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 11 C 0.08 1.96 5.47 -17.82 -0.10 1.86 16 12 N -0.88 -23.87 13.96 55.43 0.77 -23.09 16 13 Si 0.87 18.09 27.47 -169.99 -4.67 13.42 16 14 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.26 -5.12 6.54 56.52 0.37 -4.75 16 17 C 0.12 1.86 5.46 -4.04 -0.02 1.84 16 18 C -0.04 -0.52 6.03 -29.52 -0.18 -0.70 16 19 C 0.22 2.99 15.43 -20.76 -0.32 2.67 16 20 N -0.45 -7.19 18.54 42.16 0.78 -6.40 16 21 N -0.51 -7.35 3.66 -227.71 -0.83 -8.18 16 22 C 0.01 0.17 5.18 -3.71 -0.02 0.15 16 23 C 0.07 0.75 7.01 37.21 0.26 1.01 16 24 O -0.38 -4.81 10.02 -35.23 -0.35 -5.17 16 25 C 0.10 1.18 2.80 -26.68 -0.07 1.11 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 C -0.12 -1.16 5.64 -26.73 -0.15 -1.31 16 28 C -0.15 -1.34 9.81 37.16 0.36 -0.97 16 29 C 0.02 0.31 4.61 -3.71 -0.02 0.29 16 30 H 0.06 1.05 6.66 -51.93 -0.35 0.70 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.84 7.74 -51.93 -0.40 0.44 16 33 H 0.11 2.25 5.50 -51.93 -0.29 1.96 16 34 H 0.06 0.90 6.17 -51.93 -0.32 0.58 16 35 H 0.03 0.61 7.17 -51.93 -0.37 0.24 16 36 H 0.03 0.60 5.10 -51.93 -0.26 0.33 16 37 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16 39 H 0.09 1.37 7.24 -51.93 -0.38 1.00 16 40 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 1.10 5.98 -51.93 -0.31 0.79 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.60 7.83 -51.92 -0.41 0.19 16 51 H 0.09 1.33 6.37 -51.92 -0.33 1.00 16 52 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 405.46 15.07 6.11 6.11 Total: -1.00 -28.24 405.46 -7.85 -36.08 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -8.83 Total: 4.97 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -0.48 Total: 3.03 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.29 Total: -48.18 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.27 Total: -15.43 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -4.67 Total: 13.42 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -28.24 -7.85 -36.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339250709.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.810 kcal (2) G-P(sol) polarization free energy of solvation -28.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds