Wall clock time and date at job start Tue Mar 31 2020 20:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47187 * 2 1 4 4 H 1.09000 * 109.46784 * 181.81098 * 3 2 1 5 5 C 1.50700 * 109.47106 * 301.80876 * 3 2 1 6 6 O 1.21282 * 120.00168 * 97.68999 * 5 3 2 7 7 N 1.34778 * 120.00080 * 277.69429 * 5 3 2 8 8 C 1.46503 * 120.00021 * 5.04831 * 7 5 3 9 9 C 1.50700 * 109.46380 * 95.86234 * 8 7 5 10 10 H 1.07997 * 120.00559 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99352 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99854 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00203 * 0.02562 * 11 9 8 14 14 H 1.48509 * 109.47148 * 89.99701 * 13 11 9 15 15 H 1.48502 * 109.47293 * 209.99564 * 13 11 9 16 16 H 1.48493 * 109.47207 * 329.99913 * 13 11 9 17 17 C 1.46499 * 119.99858 * 185.05332 * 7 5 3 18 18 C 1.53009 * 109.47229 * 94.10451 * 17 7 5 19 19 C 1.47194 * 109.47168 * 184.87763 * 18 17 7 20 20 N 7.89540 * 90.14087 * 315.14421 * 2 1 3 21 21 N 1.46900 * 109.47453 * 61.80843 * 3 2 1 22 22 C 1.47021 * 111.03203 * 53.59217 * 21 3 2 23 23 C 1.53098 * 109.29068 * 182.35119 * 22 21 3 24 24 O 1.43016 * 109.25969 * 303.17137 * 23 22 21 25 25 C 1.43013 * 113.73861 * 58.67064 * 24 23 22 26 26 H 1.09002 * 109.50708 * 61.26309 * 25 24 23 27 27 C 1.52992 * 109.51073 * 181.39695 * 25 24 23 28 28 C 1.53000 * 109.46938 * 294.78483 * 27 25 24 29 29 C 1.47012 * 111.00204 * 177.24501 * 21 3 2 30 30 H 1.09000 * 109.46667 * 56.20573 * 1 2 3 31 31 H 1.08997 * 109.47182 * 176.20699 * 1 2 3 32 32 H 1.09004 * 109.47031 * 296.20652 * 1 2 3 33 33 H 1.08995 * 109.46843 * 239.99651 * 2 1 3 34 34 H 1.08999 * 109.46716 * 119.99814 * 2 1 3 35 35 H 1.08991 * 109.46971 * 215.86323 * 8 7 5 36 36 H 1.09001 * 109.46743 * 335.86760 * 8 7 5 37 37 H 0.97001 * 120.00095 * 180.02562 * 12 11 9 38 38 H 1.08995 * 109.47265 * 214.10134 * 17 7 5 39 39 H 1.09000 * 109.47513 * 334.10408 * 17 7 5 40 40 H 1.09000 * 109.46874 * 304.88280 * 18 17 7 41 41 H 1.09007 * 109.46667 * 64.87840 * 18 17 7 42 42 H 1.09001 * 109.47105 * 62.41358 * 22 21 3 43 43 H 1.09003 * 109.54148 * 302.32528 * 22 21 3 44 44 H 1.09001 * 109.50736 * 183.23720 * 23 22 21 45 45 H 1.08996 * 109.50695 * 63.10754 * 23 22 21 46 46 H 1.09002 * 109.46810 * 54.77835 * 27 25 24 47 47 H 1.08996 * 109.47696 * 174.78420 * 27 25 24 48 48 H 1.08999 * 109.47170 * 179.97438 * 28 27 25 49 49 H 1.09000 * 109.47508 * 299.99667 * 28 27 25 50 50 H 1.09007 * 109.47396 * 59.99621 * 28 27 25 51 51 H 1.09009 * 109.50285 * 57.67778 * 29 21 3 52 52 H 1.08993 * 109.51019 * 297.59105 * 29 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1296 1.4425 -0.0325 5 6 1.5015 2.1657 -1.2074 6 8 0.5182 2.8683 -1.1049 7 7 2.1123 2.0317 -2.4013 8 6 3.2316 1.0983 -2.5508 9 6 2.7226 -0.2140 -3.0892 10 1 1.6709 -0.3400 -3.2995 11 6 3.6001 -1.2534 -3.3144 12 7 3.1559 -2.3989 -3.7839 13 14 5.4195 -1.0353 -2.9514 14 1 5.6956 -1.4345 -1.5479 15 1 6.2137 -1.8863 -3.8735 16 1 5.7954 0.3883 -3.1441 17 6 1.6572 2.8195 -3.5495 18 6 2.4922 4.0974 -3.6545 19 6 1.9601 4.9437 -4.7349 20 7 1.5495 5.5969 -5.5688 21 7 1.5865 2.1223 1.2207 22 6 1.9643 1.3608 2.4202 23 6 1.4227 2.0727 3.6627 24 8 1.9207 3.4130 3.6931 25 6 1.5698 4.1838 2.5407 26 1 0.4848 4.2623 2.4718 27 6 2.1778 5.5829 2.6573 28 6 1.5421 6.3183 3.8388 29 6 2.1130 3.4933 1.2868 30 1 -0.3633 0.5716 -0.8540 31 1 -0.3633 -1.0254 -0.0680 32 1 -0.3633 0.4538 0.9221 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.9629 1.5159 -3.2427 36 1 3.7009 0.9355 -1.5805 37 1 3.7732 -3.1303 -3.9420 38 1 1.7735 2.2336 -4.4612 39 1 0.6074 3.0813 -3.4174 40 1 2.4452 4.6406 -2.7107 41 1 3.5280 3.8375 -3.8731 42 1 3.0507 1.2961 2.4822 43 1 1.5426 0.3573 2.3628 44 1 1.7494 1.5426 4.5573 45 1 0.3335 2.0898 3.6265 46 1 3.2528 5.4997 2.8171 47 1 1.9889 6.1389 1.7391 48 1 1.9756 7.3149 3.9222 49 1 0.4671 6.4016 3.6791 50 1 1.7310 5.7623 4.7571 51 1 1.7992 4.0468 0.4017 52 1 3.2016 3.4634 1.3304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339250709.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:46 Heat of formation + Delta-G solvation = -66.568715 kcal Electronic energy + Delta-G solvation = -31628.460968 eV Core-core repulsion = 27627.642214 eV Total energy + Delta-G solvation = -4000.818754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61134 -40.19399 -38.06366 -37.22176 -36.75744 -34.86289 -34.63373 -33.77772 -32.54100 -30.89457 -29.65822 -29.04259 -26.65717 -25.37633 -24.80101 -24.25049 -23.09119 -21.91877 -21.26274 -19.61067 -19.02894 -18.52741 -17.95326 -17.73293 -17.37907 -16.85406 -16.40817 -16.20130 -15.96526 -15.86768 -15.52647 -15.23132 -15.03892 -14.79505 -14.58790 -14.47599 -14.34533 -14.12994 -13.88275 -13.75088 -13.68622 -13.54934 -13.36247 -13.03820 -12.83584 -12.65993 -12.64459 -12.46048 -12.43760 -12.29991 -12.02944 -12.00423 -11.85188 -11.84492 -11.80649 -11.70353 -11.51936 -11.23988 -10.70658 -10.60132 -10.38736 -9.43935 -9.25184 -8.20728 -6.25889 1.45643 1.48356 1.55438 1.59695 1.77780 1.80128 2.14833 2.41255 2.77700 2.90719 3.13791 3.17741 3.59503 3.85385 3.98524 4.01084 4.09160 4.11775 4.15358 4.17310 4.22051 4.31271 4.43383 4.45629 4.51746 4.53933 4.59741 4.69902 4.72460 4.80670 4.84033 4.86331 4.87072 4.93319 4.96562 5.02459 5.04625 5.08340 5.13964 5.14676 5.28855 5.36622 5.47080 5.51587 5.56683 5.68434 5.92872 6.04669 6.25360 6.29288 6.54532 6.65380 6.80994 7.32561 7.42856 8.95036 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008862 B = 0.004520 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.841554 B = 6192.902239 C = 8068.104475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.079 3.921 4 H 0.068 0.932 5 C 0.528 3.472 6 O -0.561 6.561 7 N -0.593 5.593 8 C 0.210 3.790 9 C -0.527 4.527 10 H 0.034 0.966 11 C 0.023 3.977 12 N -0.942 5.942 13 Si 0.927 3.073 14 H -0.265 1.265 15 H -0.295 1.295 16 H -0.229 1.229 17 C 0.122 3.878 18 C -0.029 4.029 19 C 0.243 3.757 20 N -0.491 5.491 21 N -0.522 5.522 22 C 0.013 3.987 23 C 0.068 3.932 24 O -0.391 6.391 25 C 0.101 3.899 26 H 0.055 0.945 27 C -0.113 4.113 28 C -0.144 4.144 29 C 0.026 3.974 30 H 0.025 0.975 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.265 0.735 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.138 0.862 42 H 0.044 0.956 43 H 0.099 0.901 44 H 0.120 0.880 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.066 0.934 49 H 0.051 0.949 50 H 0.053 0.947 51 H 0.079 0.921 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 10.767 15.083 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C -0.032 4.032 4 H 0.085 0.915 5 C 0.317 3.683 6 O -0.440 6.440 7 N -0.324 5.324 8 C 0.089 3.911 9 C -0.565 4.565 10 H 0.052 0.948 11 C -0.175 4.175 12 N -0.582 5.582 13 Si 0.750 3.250 14 H -0.190 1.190 15 H -0.222 1.222 16 H -0.152 1.152 17 C -0.003 4.003 18 C -0.070 4.070 19 C -0.074 4.074 20 N -0.169 5.169 21 N -0.248 5.248 22 C -0.114 4.114 23 C -0.009 4.009 24 O -0.311 6.311 25 C 0.043 3.957 26 H 0.073 0.927 27 C -0.151 4.151 28 C -0.201 4.201 29 C -0.102 4.102 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.141 0.859 41 H 0.156 0.844 42 H 0.062 0.938 43 H 0.117 0.883 44 H 0.138 0.862 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.102 0.898 48 H 0.085 0.915 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.098 0.902 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.761 12.047 13.963 18.526 hybrid contribution 1.282 -1.264 -0.490 1.866 sum 3.043 10.783 13.473 17.523 Atomic orbital electron populations 1.21479 0.95269 1.00205 1.01371 1.21719 0.97063 0.93054 1.04291 1.21548 0.98085 0.94893 0.88636 0.91484 1.20471 0.82854 0.80469 0.84548 1.90615 1.26084 1.41777 1.85550 1.47846 1.34897 1.40872 1.08806 1.19808 0.85596 0.87385 0.98353 1.21413 0.94916 0.96879 1.43312 0.94804 1.25676 1.03237 0.94412 0.94225 1.70055 1.37143 1.04630 1.46375 0.86025 0.79721 0.80540 0.78689 1.18951 1.22156 1.15169 1.21139 0.98527 0.90835 0.89819 1.19727 1.01853 0.92399 0.93015 1.29271 0.92022 0.92723 0.93386 1.81221 1.10746 1.12135 1.12759 1.61873 1.59997 1.02116 1.00798 1.22970 0.99350 0.99131 0.89967 1.22742 0.98536 0.82129 0.97499 1.87932 1.77269 1.24128 1.41734 1.22149 0.98391 0.91489 0.83682 0.92721 1.21527 1.00858 0.92355 1.00334 1.21661 1.00468 1.00147 0.97843 1.22821 0.97408 0.89966 0.99999 0.95539 0.93302 0.91559 0.90096 0.89644 0.92591 0.93382 0.92585 0.89885 0.90895 0.85864 0.84411 0.93813 0.88309 0.86200 0.92627 0.91031 0.89761 0.91486 0.92979 0.92766 0.90247 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.47 71.98 0.68 -3.48 16 2 C -0.12 -3.99 5.12 30.59 0.16 -3.83 16 3 C 0.08 2.41 1.35 44.17 0.06 2.47 16 4 H 0.07 1.95 6.36 -2.39 -0.02 1.94 16 5 C 0.53 17.93 4.84 87.66 0.42 18.35 16 6 O -0.56 -21.31 14.34 -3.03 -0.04 -21.35 16 7 N -0.59 -19.57 2.46 -826.15 -2.03 -21.60 16 8 C 0.21 7.49 3.86 85.63 0.33 7.82 16 9 C -0.53 -24.70 7.88 25.60 0.20 -24.49 16 10 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 11 C 0.02 1.16 5.47 84.66 0.46 1.62 16 12 N -0.94 -52.54 13.96 21.45 0.30 -52.24 16 13 Si 0.93 35.96 27.47 68.60 1.88 37.84 16 14 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 15 H -0.30 -12.03 7.11 99.48 0.71 -11.33 16 16 H -0.23 -7.55 6.54 99.48 0.65 -6.90 16 17 C 0.12 3.54 5.46 86.38 0.47 4.01 16 18 C -0.03 -0.60 6.03 28.79 0.17 -0.43 16 19 C 0.24 6.25 15.43 89.44 1.38 7.63 16 20 N -0.49 -15.44 18.54 20.00 0.37 -15.07 16 21 N -0.52 -14.09 3.66 -874.35 -3.20 -17.29 16 22 C 0.01 0.30 5.18 86.31 0.45 0.74 16 23 C 0.07 1.32 7.01 72.01 0.50 1.83 16 24 O -0.39 -8.91 10.02 -148.98 -1.49 -10.40 16 25 C 0.10 2.26 2.80 30.63 0.09 2.35 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 C -0.11 -2.02 5.64 30.59 0.17 -1.85 16 28 C -0.14 -2.32 9.81 71.98 0.71 -1.61 16 29 C 0.03 0.65 4.61 86.32 0.40 1.05 16 30 H 0.03 1.00 6.66 -2.39 -0.02 0.99 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 32 H 0.07 2.01 7.74 -2.39 -0.02 1.99 16 33 H 0.08 3.21 5.50 -2.39 -0.01 3.20 16 34 H 0.09 2.34 6.17 -2.39 -0.01 2.32 16 35 H 0.06 1.81 7.17 -2.39 -0.02 1.79 16 36 H 0.05 1.62 5.10 -2.39 -0.01 1.60 16 37 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 38 H 0.08 2.55 8.10 -2.39 -0.02 2.53 16 39 H 0.07 2.33 7.24 -2.39 -0.02 2.31 16 40 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.14 2.22 8.14 -2.38 -0.02 2.21 16 42 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.10 2.06 5.98 -2.39 -0.01 2.04 16 44 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 46 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.05 0.95 7.83 -2.38 -0.02 0.93 16 51 H 0.08 2.18 6.37 -2.38 -0.02 2.16 16 52 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -63.43 405.46 3.29 -60.14 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.85 Total: 27.79 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 6.66 Total: 12.18 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -4.56 Total: -106.20 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -1.54 Total: -31.76 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 1.88 Total: 37.84 kcal Total: -63.43 3.29 -60.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339250709.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.429 kcal (2) G-P(sol) polarization free energy of solvation -63.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds