Wall clock time and date at job start Tue Mar 31 2020 20:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47447 * 2 1 4 4 H 1.09000 * 109.47064 * 303.55237 * 3 2 1 5 5 C 1.50700 * 109.47261 * 183.55247 * 3 2 1 6 6 O 1.21283 * 119.99705 * 253.07188 * 5 3 2 7 7 N 1.34774 * 119.99893 * 73.07395 * 5 3 2 8 8 C 1.46492 * 120.00367 * 4.00890 * 7 5 3 9 9 C 1.50701 * 109.47499 * 85.92172 * 8 7 5 10 10 H 1.08006 * 119.99364 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00518 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00021 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 119.99715 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47034 * 89.99920 * 13 11 9 15 15 H 1.48499 * 109.46969 * 209.99927 * 13 11 9 16 16 H 1.48498 * 109.47151 * 329.99559 * 13 11 9 17 17 C 1.46507 * 119.99634 * 184.00960 * 7 5 3 18 18 C 1.53001 * 109.46914 * 94.70304 * 17 7 5 19 19 C 1.47204 * 109.46697 * 179.97438 * 18 17 7 20 20 N 7.24473 * 169.35532 * 245.22015 * 2 1 3 21 21 N 1.46898 * 109.47132 * 63.54758 * 3 2 1 22 22 C 1.47017 * 110.99710 * 56.36929 * 21 3 2 23 23 C 1.53102 * 109.25739 * 182.39155 * 22 21 3 24 24 O 1.43017 * 109.25706 * 303.15010 * 23 22 21 25 25 C 1.43014 * 113.73919 * 58.67248 * 24 23 22 26 26 H 1.08997 * 109.51211 * 61.25847 * 25 24 23 27 27 C 1.52997 * 109.51004 * 181.39392 * 25 24 23 28 28 C 1.52999 * 109.47105 * 294.78348 * 27 25 24 29 29 C 1.47016 * 111.00128 * 179.97438 * 21 3 2 30 30 H 1.08998 * 109.46670 * 300.00078 * 1 2 3 31 31 H 1.08992 * 109.46523 * 60.00017 * 1 2 3 32 32 H 1.08999 * 109.46876 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.46992 * 239.99558 * 2 1 3 34 34 H 1.09001 * 109.47052 * 120.00111 * 2 1 3 35 35 H 1.09004 * 109.47330 * 205.92679 * 8 7 5 36 36 H 1.09005 * 109.47120 * 325.92415 * 8 7 5 37 37 H 0.97000 * 119.99895 * 180.02562 * 12 11 9 38 38 H 1.08998 * 109.46806 * 214.70061 * 17 7 5 39 39 H 1.09002 * 109.47260 * 334.70042 * 17 7 5 40 40 H 1.08998 * 109.47185 * 299.99524 * 18 17 7 41 41 H 1.08994 * 109.47074 * 59.99999 * 18 17 7 42 42 H 1.08998 * 109.50442 * 302.32308 * 22 21 3 43 43 H 1.08994 * 109.51021 * 62.45710 * 22 21 3 44 44 H 1.08994 * 109.50784 * 183.21731 * 23 22 21 45 45 H 1.08994 * 109.54315 * 63.10569 * 23 22 21 46 46 H 1.09003 * 109.46867 * 54.78160 * 27 25 24 47 47 H 1.09003 * 109.47818 * 174.77909 * 27 25 24 48 48 H 1.08998 * 109.47294 * 179.97438 * 28 27 25 49 49 H 1.08995 * 109.46793 * 299.99615 * 28 27 25 50 50 H 1.08999 * 109.46974 * 59.99884 * 28 27 25 51 51 H 1.08998 * 109.51047 * 297.54831 * 29 21 3 52 52 H 1.08998 * 109.50245 * 57.63119 * 29 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6258 1.9743 -0.8564 5 6 3.5446 1.4433 -0.0880 6 8 4.2088 1.7287 0.8858 7 7 4.1518 1.1270 -1.2489 8 6 3.3508 0.8682 -2.4478 9 6 3.0569 2.1706 -3.1466 10 1 3.4299 3.0985 -2.7385 11 6 2.3128 2.1778 -4.3072 12 7 2.0559 3.3146 -4.9166 13 14 1.6683 0.5729 -5.0133 14 1 0.3251 0.2874 -4.4479 15 1 1.5696 0.6865 -6.4907 16 1 2.5979 -0.5308 -4.6628 17 6 5.6131 1.0421 -1.3117 18 6 6.0489 -0.4097 -1.1031 19 6 7.5171 -0.4951 -1.1669 20 7 8.6501 -0.5609 -1.2150 21 7 1.6217 2.1098 1.2400 22 6 2.0910 1.3699 2.4206 23 6 1.5837 2.0652 3.6867 24 8 2.0273 3.4248 3.6882 25 6 1.5879 4.1751 2.5528 26 1 0.4985 4.2091 2.5383 27 6 2.1432 5.5984 2.6347 28 6 1.5380 6.3131 3.8445 29 6 2.0957 3.5010 1.2754 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.9042 0.2121 -3.1199 36 1 2.4140 0.3895 -2.1626 37 1 1.5321 3.3196 -5.7330 38 1 5.9554 1.3876 -2.2871 39 1 6.0473 1.6675 -0.5317 40 1 5.7065 -0.7552 -0.1277 41 1 5.6147 -1.0350 -1.8831 42 1 1.7077 0.3501 2.3870 43 1 3.1807 1.3498 2.4282 44 1 1.9763 1.5533 4.5653 45 1 0.4943 2.0379 3.7061 46 1 3.2274 5.5598 2.7403 47 1 1.8860 6.1418 1.7254 48 1 1.9340 7.3269 3.9032 49 1 0.4539 6.3517 3.7388 50 1 1.7954 5.7698 4.7537 51 1 3.1856 3.5146 1.2648 52 1 1.7166 4.0368 0.4052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339250711.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:53 Heat of formation + Delta-G solvation = -47.765731 kcal Electronic energy + Delta-G solvation = -31739.228953 eV Core-core repulsion = 27739.225557 eV Total energy + Delta-G solvation = -4000.003396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.57487 -38.83137 -36.93993 -35.96419 -35.42689 -33.84233 -32.91273 -32.60602 -31.28458 -29.78382 -28.13584 -27.80900 -25.57212 -24.09154 -23.47180 -22.80924 -21.96543 -20.63280 -20.21175 -18.48078 -17.73011 -16.99365 -16.77889 -16.42466 -16.32430 -15.51395 -15.11854 -14.96548 -14.73676 -14.58163 -14.25523 -14.14430 -13.83566 -13.62997 -13.56525 -13.16984 -13.09247 -12.85104 -12.67567 -12.47559 -12.36856 -12.08942 -11.99413 -11.90396 -11.76652 -11.63880 -11.41249 -11.15493 -11.07707 -11.03924 -10.91708 -10.80287 -10.70934 -10.53976 -10.40166 -10.32918 -10.15626 -9.78792 -9.72395 -9.34236 -8.82828 -8.03699 -7.76606 -6.31856 -4.35147 2.71619 2.83324 3.06406 3.09480 3.15288 3.19778 3.50943 3.90544 4.04997 4.16432 4.22429 4.86227 4.96788 4.99362 5.08681 5.13237 5.18178 5.20594 5.24844 5.26571 5.33783 5.42694 5.49562 5.50053 5.58392 5.63272 5.71107 5.79969 5.81849 5.91641 5.95572 6.00335 6.03363 6.07802 6.09682 6.15549 6.18557 6.24838 6.30236 6.35703 6.39918 6.46856 6.50848 6.61772 7.06365 7.16834 7.23468 7.30925 7.41022 7.59463 7.89934 8.24593 8.63685 8.74831 9.26132 10.80456 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008439 B = 0.004538 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.111372 B = 6168.378253 C = 7585.835679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C 0.066 3.934 4 H 0.128 0.872 5 C 0.497 3.503 6 O -0.560 6.560 7 N -0.587 5.587 8 C 0.199 3.801 9 C -0.546 4.546 10 H 0.078 0.922 11 C 0.080 3.920 12 N -0.886 5.886 13 Si 0.867 3.133 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.263 1.263 17 C 0.120 3.880 18 C -0.044 4.044 19 C 0.219 3.781 20 N -0.446 5.446 21 N -0.504 5.504 22 C -0.011 4.011 23 C 0.070 3.930 24 O -0.381 6.381 25 C 0.100 3.900 26 H 0.061 0.939 27 C -0.117 4.117 28 C -0.146 4.146 29 C 0.011 3.989 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.040 0.960 37 H 0.268 0.732 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.051 0.949 49 H 0.051 0.949 50 H 0.059 0.941 51 H 0.067 0.933 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 -4.575 11.995 13.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.046 4.046 4 H 0.146 0.854 5 C 0.285 3.715 6 O -0.441 6.441 7 N -0.317 5.317 8 C 0.079 3.921 9 C -0.584 4.584 10 H 0.096 0.904 11 C -0.125 4.125 12 N -0.523 5.523 13 Si 0.694 3.306 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.188 1.188 17 C -0.005 4.005 18 C -0.085 4.085 19 C -0.099 4.099 20 N -0.123 5.123 21 N -0.228 5.228 22 C -0.138 4.138 23 C -0.007 4.007 24 O -0.300 6.300 25 C 0.042 3.958 26 H 0.079 0.921 27 C -0.155 4.155 28 C -0.203 4.203 29 C -0.117 4.117 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.085 0.915 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.918 -4.349 12.397 13.458 hybrid contribution -0.135 -0.889 -1.089 1.412 sum -3.052 -5.238 11.308 12.831 Atomic orbital electron populations 1.21649 0.94463 1.00813 1.02997 1.21654 0.97495 0.93821 1.02401 1.21987 0.89866 0.97546 0.95157 0.85430 1.21852 0.91666 0.75625 0.82329 1.90533 1.67042 1.50192 1.36326 1.48039 1.05493 1.67218 1.10910 1.20063 0.91260 0.98131 0.82695 1.21311 1.35024 0.93015 1.09052 0.90402 1.24858 0.95293 0.96074 0.96228 1.69879 1.38342 1.25519 1.18563 0.86987 0.80209 0.84254 0.79194 1.19543 1.20884 1.18807 1.21161 0.82170 0.93046 1.04145 1.19752 0.81797 1.01357 1.05616 1.29057 0.95092 0.93057 0.92742 1.81191 1.12962 1.08735 1.09398 1.62670 1.57078 1.01968 1.01047 1.23202 1.02624 0.97672 0.90327 1.22552 0.98339 0.82493 0.97324 1.87936 1.76119 1.22258 1.43736 1.22118 0.97768 0.90949 0.84947 0.92141 1.21521 1.01446 0.93290 0.99236 1.21685 1.00383 0.99687 0.98569 1.22939 1.00989 0.89205 0.98534 0.91678 0.92294 0.93393 0.90469 0.91789 0.94567 0.94228 0.92227 0.89366 0.89510 0.87492 0.87162 0.90399 0.89545 0.89263 0.93273 0.91169 0.90469 0.92982 0.93026 0.92151 0.91460 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.79 37.16 0.36 -1.37 16 2 C -0.12 -1.53 4.72 -26.73 -0.13 -1.66 16 3 C 0.07 1.05 1.43 -68.87 -0.10 0.95 16 4 H 0.13 2.34 6.99 -51.93 -0.36 1.98 16 5 C 0.50 8.53 6.18 -10.99 -0.07 8.47 16 6 O -0.56 -10.44 11.25 5.55 0.06 -10.38 16 7 N -0.59 -9.90 2.47 -175.06 -0.43 -10.33 16 8 C 0.20 3.72 3.80 -5.20 -0.02 3.70 16 9 C -0.55 -12.93 9.31 -34.44 -0.32 -13.25 16 10 H 0.08 2.12 8.06 -52.48 -0.42 1.69 16 11 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.89 -24.25 13.96 55.43 0.77 -23.47 16 13 Si 0.87 18.12 27.47 -169.99 -4.67 13.45 16 14 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.26 -5.07 6.54 56.52 0.37 -4.70 16 17 C 0.12 1.78 5.43 -4.04 -0.02 1.76 16 18 C -0.04 -0.51 6.03 -29.52 -0.18 -0.68 16 19 C 0.22 2.96 15.43 -20.76 -0.32 2.63 16 20 N -0.45 -7.14 18.54 42.15 0.78 -6.36 16 21 N -0.50 -7.55 4.15 -227.72 -0.94 -8.49 16 22 C -0.01 -0.15 4.90 -3.71 -0.02 -0.16 16 23 C 0.07 0.88 7.01 37.21 0.26 1.14 16 24 O -0.38 -5.59 10.02 -35.23 -0.35 -5.95 16 25 C 0.10 1.39 2.80 -26.68 -0.07 1.31 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 C -0.12 -1.45 5.64 -26.73 -0.15 -1.60 16 28 C -0.15 -1.56 9.81 37.16 0.36 -1.20 16 29 C 0.01 0.18 4.55 -3.71 -0.02 0.16 16 30 H 0.06 0.79 7.71 -51.93 -0.40 0.39 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.03 5.85 -51.93 -0.30 0.72 16 34 H 0.06 0.78 6.10 -51.93 -0.32 0.46 16 35 H 0.04 0.66 7.10 -51.93 -0.37 0.29 16 36 H 0.04 0.71 3.99 -51.93 -0.21 0.50 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.09 1.34 8.11 -51.93 -0.42 0.92 16 39 H 0.09 1.37 7.24 -51.93 -0.38 0.99 16 40 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.08 0.96 6.03 -51.93 -0.31 0.64 16 43 H 0.09 1.42 5.30 -51.93 -0.28 1.15 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.06 0.68 7.83 -51.93 -0.41 0.28 16 51 H 0.07 1.24 5.90 -51.93 -0.31 0.93 16 52 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -28.42 403.11 -7.95 -36.37 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -8.72 Total: 6.99 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -0.52 Total: 2.09 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.18 Total: -48.66 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.29 Total: -16.32 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -4.67 Total: 13.45 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.42 -7.95 -36.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339250711.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.399 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds