Wall clock time and date at job start Tue Mar 31 2020 20:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47092 * 2 1 4 4 H 1.09001 * 109.46688 * 56.62822 * 3 2 1 5 5 N 1.46894 * 109.47095 * 296.62733 * 3 2 1 6 6 C 1.46901 * 111.00380 * 303.33320 * 5 3 2 7 7 C 1.50695 * 109.47364 * 185.00076 * 6 5 3 8 8 O 1.21289 * 120.00161 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00132 * 179.72196 * 7 6 5 10 10 C 1.46499 * 120.00213 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.46868 * 90.00470 * 10 9 7 12 12 H 1.07999 * 119.99595 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00098 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99623 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99873 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47292 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47230 * 119.99650 * 15 13 11 18 18 H 1.48500 * 109.47023 * 239.99555 * 15 13 11 19 19 C 1.46499 * 119.99630 * 0.02562 * 9 7 6 20 20 C 1.52994 * 109.47377 * 89.99653 * 19 9 7 21 21 C 1.47199 * 109.47226 * 179.97438 * 20 19 9 22 22 N 6.27658 * 103.88470 * 240.29965 * 2 1 3 23 23 C 1.52998 * 109.46919 * 176.62879 * 3 2 1 24 24 C 1.53178 * 109.54383 * 299.82162 * 23 3 2 25 25 C 1.53101 * 109.15872 * 183.24636 * 24 23 3 26 26 O 1.42900 * 109.48819 * 57.47269 * 25 24 23 27 27 C 1.42899 * 114.09943 * 298.88791 * 26 25 24 28 28 C 1.53097 * 109.41394 * 61.16149 * 27 26 25 29 29 H 1.08998 * 109.47382 * 185.48395 * 1 2 3 30 30 H 1.09003 * 109.47408 * 305.48761 * 1 2 3 31 31 H 1.09000 * 109.47315 * 65.48340 * 1 2 3 32 32 H 1.09000 * 109.47098 * 240.00557 * 2 1 3 33 33 H 1.09000 * 109.47142 * 120.00414 * 2 1 3 34 34 H 1.00897 * 111.00181 * 67.29302 * 5 3 2 35 35 H 1.08998 * 109.46500 * 65.00292 * 6 5 3 36 36 H 1.08995 * 109.47080 * 305.00639 * 6 5 3 37 37 H 1.08994 * 109.47180 * 210.00406 * 10 9 7 38 38 H 1.09006 * 109.47124 * 330.00826 * 10 9 7 39 39 H 0.96998 * 119.99762 * 180.02562 * 14 13 11 40 40 H 1.09009 * 109.46795 * 209.99652 * 19 9 7 41 41 H 1.08998 * 109.47392 * 329.99325 * 19 9 7 42 42 H 1.09009 * 109.47157 * 299.99777 * 20 19 9 43 43 H 1.08998 * 109.47127 * 59.99510 * 20 19 9 44 44 H 1.08996 * 109.54564 * 60.00054 * 23 3 2 45 45 H 1.09004 * 109.52452 * 303.06131 * 24 23 3 46 46 H 1.08994 * 109.52062 * 63.24801 * 24 23 3 47 47 H 1.09007 * 109.40296 * 297.49387 * 25 24 23 48 48 H 1.08998 * 109.48386 * 177.50948 * 25 24 23 49 49 H 1.08996 * 109.48813 * 301.17777 * 27 26 25 50 50 H 1.08996 * 109.48377 * 181.13849 * 27 26 25 51 51 H 1.08999 * 109.52561 * 182.48546 * 28 27 26 52 52 H 1.08995 * 109.57494 * 62.32355 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6281 1.9735 0.8583 5 7 1.6180 2.1111 -1.2380 6 6 2.0894 1.3769 -2.4199 7 6 1.7452 2.1540 -3.6643 8 8 1.1646 3.2152 -3.5755 9 7 2.0878 1.6727 -4.8758 10 6 1.7526 2.4278 -6.0856 11 6 2.8818 3.3684 -6.4195 12 1 3.7612 3.4002 -5.7934 13 6 2.7921 4.1884 -7.5243 14 7 1.7214 4.1493 -8.2870 15 14 4.1919 5.3538 -7.9385 16 1 5.2735 5.2059 -6.9318 17 1 4.7227 5.0303 -9.2872 18 1 3.6921 6.7521 -7.9257 19 6 2.7944 0.3938 -4.9827 20 6 1.7770 -0.7426 -5.1025 21 6 2.4871 -2.0275 -5.2106 22 7 3.0362 -3.0190 -5.2927 23 6 3.5676 1.4433 0.0848 24 6 4.0094 0.7504 1.3775 25 6 5.5341 0.8276 1.4932 26 8 5.9460 2.1955 1.4603 27 6 5.6019 2.8797 0.2538 28 6 4.0798 2.8870 0.0894 29 1 -0.3634 -1.0229 0.0982 30 1 -0.3634 0.5966 0.8368 31 1 -0.3634 0.4264 -0.9350 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.6163 2.2295 -1.2617 35 1 1.6076 0.3999 -2.4567 36 1 3.1700 1.2472 -2.3598 37 1 1.5984 1.7367 -6.9142 38 1 0.8409 3.0005 -5.9155 39 1 1.6584 4.7259 -9.0644 40 1 3.4331 0.4044 -5.8660 41 1 3.4064 0.2413 -4.0937 42 1 1.1383 -0.7531 -4.2192 43 1 1.1651 -0.5901 -5.9915 44 1 3.9807 0.9126 -0.7729 45 1 3.5547 1.2506 2.2327 46 1 3.6967 -0.2935 1.3564 47 1 5.9881 0.2911 0.6600 48 1 5.8507 0.3750 2.4329 49 1 6.0567 2.3701 -0.5956 50 1 5.9673 3.9055 0.3007 51 1 3.8173 3.3696 -0.8520 52 1 3.6257 3.4319 0.9170 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343392133.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:07 Heat of formation + Delta-G solvation = -65.842737 kcal Electronic energy + Delta-G solvation = -30794.412498 eV Core-core repulsion = 26793.625225 eV Total energy + Delta-G solvation = -4000.787273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.13541 -39.16309 -37.53010 -36.84484 -35.22358 -33.33913 -32.88400 -32.13201 -31.03921 -30.85642 -28.44113 -27.02702 -25.60601 -24.03127 -23.95442 -23.15657 -22.62879 -20.69247 -19.83058 -18.49370 -17.74085 -16.89399 -16.57598 -16.46396 -16.09099 -15.83393 -15.37849 -15.08594 -14.79782 -14.72218 -14.64625 -14.44178 -14.20542 -13.88931 -13.62714 -13.58279 -13.17687 -12.84684 -12.64538 -12.47063 -12.43852 -12.34430 -12.09682 -12.02287 -11.78308 -11.74916 -11.55634 -11.39639 -11.29469 -11.06104 -11.00649 -10.86086 -10.73525 -10.62103 -10.56198 -10.30087 -10.18961 -9.68840 -9.59288 -9.00733 -8.47783 -8.31542 -7.83736 -6.09177 -4.13397 2.68048 2.75853 3.28105 3.29855 3.36807 3.40690 3.55000 3.76797 4.00902 4.29382 4.35652 4.42566 4.66413 4.73798 4.80546 4.89325 4.91838 4.93162 5.05442 5.09605 5.11586 5.13196 5.23242 5.26352 5.27837 5.34250 5.42269 5.45130 5.50212 5.54888 5.58684 5.65215 5.65567 5.76644 5.78435 5.79453 5.90396 5.98793 5.99963 6.03560 6.23493 6.32371 6.79981 7.04154 7.09035 7.34815 7.39478 7.43628 7.52458 7.87403 8.17246 8.26868 8.85401 9.01145 9.52369 10.99019 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008647 B = 0.003671 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3237.258444 B = 7625.695446 C = 8983.011174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.165 4.165 3 C 0.096 3.904 4 H 0.085 0.915 5 N -0.660 5.660 6 C 0.033 3.967 7 C 0.506 3.494 8 O -0.517 6.517 9 N -0.599 5.599 10 C 0.246 3.754 11 C -0.526 4.526 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.119 3.881 20 C -0.051 4.051 21 C 0.216 3.784 22 N -0.445 5.445 23 C -0.082 4.082 24 C -0.151 4.151 25 C 0.061 3.939 26 O -0.387 6.387 27 C 0.057 3.943 28 C -0.141 4.141 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.351 0.649 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.263 0.737 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.047 0.953 48 H 0.089 0.911 49 H 0.048 0.952 50 H 0.093 0.907 51 H 0.091 0.909 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -10.021 17.777 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.204 4.204 3 C -0.015 4.015 4 H 0.103 0.897 5 N -0.291 5.291 6 C -0.100 4.100 7 C 0.291 3.709 8 O -0.392 6.392 9 N -0.332 5.332 10 C 0.127 3.873 11 C -0.565 4.565 12 H 0.077 0.923 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.008 4.008 20 C -0.092 4.092 21 C -0.102 4.102 22 N -0.122 5.122 23 C -0.101 4.101 24 C -0.189 4.189 25 C -0.016 4.016 26 O -0.306 6.306 27 C -0.019 4.019 28 C -0.179 4.179 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.171 0.829 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.135 0.865 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.066 0.934 48 H 0.108 0.892 49 H 0.067 0.933 50 H 0.111 0.889 51 H 0.109 0.891 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.953 -10.269 17.660 20.521 hybrid contribution -0.232 -0.004 -0.651 0.691 sum 1.721 -10.272 17.009 19.944 Atomic orbital electron populations 1.21786 0.95623 1.01809 1.02028 1.22370 0.96432 0.98958 1.02683 1.21669 0.94606 0.92078 0.93122 0.89720 1.60182 1.19628 1.49690 0.99632 1.22019 1.02092 0.95473 0.90399 1.20279 0.80068 0.86346 0.84168 1.90700 1.40737 1.21766 1.85998 1.48216 1.56891 1.20035 1.08065 1.19329 0.97441 0.90980 0.79555 1.21450 1.03370 1.21474 1.10200 0.92340 1.24910 0.96005 0.96960 0.96101 1.69926 1.27535 1.39489 1.16363 0.86474 0.82180 0.80924 0.78040 1.19781 1.21035 1.20884 1.21272 0.93151 0.82374 1.03998 1.19914 0.98410 0.84760 1.06128 1.29133 0.93666 0.94533 0.92849 1.81226 1.09469 1.12199 1.09321 1.21235 0.94766 0.96764 0.97335 1.22293 0.96859 1.01238 0.98557 1.22531 0.93763 0.83483 1.01787 1.87912 1.79786 1.23604 1.39258 1.22672 0.95203 0.97386 0.86676 1.22112 0.95053 0.96460 1.04255 0.92671 0.92480 0.92664 0.91613 0.91257 0.82884 0.92813 0.88606 0.94859 0.93626 0.92757 0.88770 0.90932 0.87809 0.86453 0.91176 0.91006 0.90864 0.93436 0.89245 0.93344 0.88926 0.89070 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.52 37.16 0.35 -0.81 16 2 C -0.17 -1.26 4.81 -26.73 -0.13 -1.39 16 3 C 0.10 0.86 2.14 -67.72 -0.14 0.72 16 4 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 5 N -0.66 -7.77 5.18 -108.00 -0.56 -8.33 16 6 C 0.03 0.39 3.87 -4.98 -0.02 0.37 16 7 C 0.51 8.88 7.72 -10.99 -0.08 8.80 16 8 O -0.52 -11.63 15.89 5.55 0.09 -11.54 16 9 N -0.60 -10.54 2.46 -175.06 -0.43 -10.97 16 10 C 0.25 5.71 5.16 -5.19 -0.03 5.68 16 11 C -0.53 -13.90 9.39 -34.44 -0.32 -14.22 16 12 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 15 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 C 0.12 1.52 5.17 -4.05 -0.02 1.50 16 20 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 21 C 0.22 2.51 15.43 -20.75 -0.32 2.19 16 22 N -0.44 -6.34 18.54 42.17 0.78 -5.56 16 23 C -0.08 -0.76 1.58 -90.43 -0.14 -0.90 16 24 C -0.15 -1.19 4.98 -26.59 -0.13 -1.32 16 25 C 0.06 0.53 6.84 37.21 0.25 0.79 16 26 O -0.39 -4.39 10.77 -35.23 -0.38 -4.77 16 27 C 0.06 0.61 6.84 37.21 0.25 0.86 16 28 C -0.14 -1.52 5.22 -26.59 -0.14 -1.66 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.46 7.19 -51.93 -0.37 0.08 16 32 H 0.07 0.52 6.28 -51.93 -0.33 0.19 16 33 H 0.07 0.48 6.34 -51.93 -0.33 0.15 16 34 H 0.35 4.27 7.41 -39.29 -0.29 3.98 16 35 H 0.05 0.53 5.52 -51.93 -0.29 0.24 16 36 H 0.10 1.11 5.40 -51.93 -0.28 0.83 16 37 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 38 H 0.05 1.22 7.43 -51.93 -0.39 0.83 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 40 H 0.09 1.31 8.07 -51.92 -0.42 0.89 16 41 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 42 H 0.10 0.83 7.23 -51.92 -0.38 0.45 16 43 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.07 0.67 6.38 -51.93 -0.33 0.34 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.48 6.55 -51.93 -0.34 0.14 16 47 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 48 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.09 1.18 7.72 -51.93 -0.40 0.78 16 52 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 410.71 15.07 6.19 6.19 Total: -1.00 -32.37 410.71 -8.16 -40.53 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -8.67 Total: 1.40 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.90 Total: 1.52 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.53 Total: -49.49 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.29 Total: -16.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.37 -8.16 -40.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343392133.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.316 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds