Wall clock time and date at job start Tue Mar 31 2020 20:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47092 * 2 1 4 4 H 1.09001 * 109.46688 * 56.62822 * 3 2 1 5 5 N 1.46894 * 109.47095 * 296.62733 * 3 2 1 6 6 C 1.46901 * 111.00380 * 303.33320 * 5 3 2 7 7 C 1.50695 * 109.47364 * 185.00076 * 6 5 3 8 8 O 1.21289 * 120.00161 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00132 * 179.72196 * 7 6 5 10 10 C 1.46499 * 120.00213 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.46868 * 90.00470 * 10 9 7 12 12 H 1.07999 * 119.99595 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00098 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99623 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99873 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47292 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47230 * 119.99650 * 15 13 11 18 18 H 1.48500 * 109.47023 * 239.99555 * 15 13 11 19 19 C 1.46499 * 119.99630 * 0.02562 * 9 7 6 20 20 C 1.52994 * 109.47377 * 89.99653 * 19 9 7 21 21 C 1.47199 * 109.47226 * 179.97438 * 20 19 9 22 22 N 6.27658 * 103.88470 * 240.29965 * 2 1 3 23 23 C 1.52998 * 109.46919 * 176.62879 * 3 2 1 24 24 C 1.53178 * 109.54383 * 299.82162 * 23 3 2 25 25 C 1.53101 * 109.15872 * 183.24636 * 24 23 3 26 26 O 1.42900 * 109.48819 * 57.47269 * 25 24 23 27 27 C 1.42899 * 114.09943 * 298.88791 * 26 25 24 28 28 C 1.53097 * 109.41394 * 61.16149 * 27 26 25 29 29 H 1.08998 * 109.47382 * 185.48395 * 1 2 3 30 30 H 1.09003 * 109.47408 * 305.48761 * 1 2 3 31 31 H 1.09000 * 109.47315 * 65.48340 * 1 2 3 32 32 H 1.09000 * 109.47098 * 240.00557 * 2 1 3 33 33 H 1.09000 * 109.47142 * 120.00414 * 2 1 3 34 34 H 1.00897 * 111.00181 * 67.29302 * 5 3 2 35 35 H 1.08998 * 109.46500 * 65.00292 * 6 5 3 36 36 H 1.08995 * 109.47080 * 305.00639 * 6 5 3 37 37 H 1.08994 * 109.47180 * 210.00406 * 10 9 7 38 38 H 1.09006 * 109.47124 * 330.00826 * 10 9 7 39 39 H 0.96998 * 119.99762 * 180.02562 * 14 13 11 40 40 H 1.09009 * 109.46795 * 209.99652 * 19 9 7 41 41 H 1.08998 * 109.47392 * 329.99325 * 19 9 7 42 42 H 1.09009 * 109.47157 * 299.99777 * 20 19 9 43 43 H 1.08998 * 109.47127 * 59.99510 * 20 19 9 44 44 H 1.08996 * 109.54564 * 60.00054 * 23 3 2 45 45 H 1.09004 * 109.52452 * 303.06131 * 24 23 3 46 46 H 1.08994 * 109.52062 * 63.24801 * 24 23 3 47 47 H 1.09007 * 109.40296 * 297.49387 * 25 24 23 48 48 H 1.08998 * 109.48386 * 177.50948 * 25 24 23 49 49 H 1.08996 * 109.48813 * 301.17777 * 27 26 25 50 50 H 1.08996 * 109.48377 * 181.13849 * 27 26 25 51 51 H 1.08999 * 109.52561 * 182.48546 * 28 27 26 52 52 H 1.08995 * 109.57494 * 62.32355 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6281 1.9735 0.8583 5 7 1.6180 2.1111 -1.2380 6 6 2.0894 1.3769 -2.4199 7 6 1.7452 2.1540 -3.6643 8 8 1.1646 3.2152 -3.5755 9 7 2.0878 1.6727 -4.8758 10 6 1.7526 2.4278 -6.0856 11 6 2.8818 3.3684 -6.4195 12 1 3.7612 3.4002 -5.7934 13 6 2.7921 4.1884 -7.5243 14 7 1.7214 4.1493 -8.2870 15 14 4.1919 5.3538 -7.9385 16 1 5.2735 5.2059 -6.9318 17 1 4.7227 5.0303 -9.2872 18 1 3.6921 6.7521 -7.9257 19 6 2.7944 0.3938 -4.9827 20 6 1.7770 -0.7426 -5.1025 21 6 2.4871 -2.0275 -5.2106 22 7 3.0362 -3.0190 -5.2927 23 6 3.5676 1.4433 0.0848 24 6 4.0094 0.7504 1.3775 25 6 5.5341 0.8276 1.4932 26 8 5.9460 2.1955 1.4603 27 6 5.6019 2.8797 0.2538 28 6 4.0798 2.8870 0.0894 29 1 -0.3634 -1.0229 0.0982 30 1 -0.3634 0.5966 0.8368 31 1 -0.3634 0.4264 -0.9350 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.6163 2.2295 -1.2617 35 1 1.6076 0.3999 -2.4567 36 1 3.1700 1.2472 -2.3598 37 1 1.5984 1.7367 -6.9142 38 1 0.8409 3.0005 -5.9155 39 1 1.6584 4.7259 -9.0644 40 1 3.4331 0.4044 -5.8660 41 1 3.4064 0.2413 -4.0937 42 1 1.1383 -0.7531 -4.2192 43 1 1.1651 -0.5901 -5.9915 44 1 3.9807 0.9126 -0.7729 45 1 3.5547 1.2506 2.2327 46 1 3.6967 -0.2935 1.3564 47 1 5.9881 0.2911 0.6600 48 1 5.8507 0.3750 2.4329 49 1 6.0567 2.3701 -0.5956 50 1 5.9673 3.9055 0.3007 51 1 3.8173 3.3696 -0.8520 52 1 3.6257 3.4319 0.9170 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343392133.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:06 Heat of formation + Delta-G solvation = -86.738774 kcal Electronic energy + Delta-G solvation = -30795.318618 eV Core-core repulsion = 26793.625225 eV Total energy + Delta-G solvation = -4001.693394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.09241 -40.31467 -38.39740 -37.92016 -36.61210 -34.87064 -34.08607 -32.92486 -32.13601 -31.78014 -29.81111 -28.22088 -26.71303 -25.29290 -24.68985 -24.32961 -23.74731 -21.43129 -20.77974 -19.66112 -18.86281 -18.34318 -18.05036 -17.50859 -16.97803 -16.87386 -16.54196 -16.20806 -15.91221 -15.69713 -15.57308 -15.49448 -15.23627 -14.95502 -14.63472 -14.37298 -14.29037 -14.09336 -13.79414 -13.58253 -13.53294 -13.27996 -13.19125 -13.11623 -13.05096 -12.83701 -12.69085 -12.51921 -12.38667 -12.30991 -12.16254 -12.14649 -11.85331 -11.68422 -11.61991 -11.45105 -11.29743 -11.05028 -10.57473 -10.49139 -10.33824 -9.43968 -9.16100 -8.16402 -6.27975 1.39235 1.42396 1.52336 1.69472 1.83342 1.95828 2.29208 2.45496 3.02739 3.07702 3.15786 3.35999 3.64305 3.82695 3.95929 4.00972 4.05783 4.11949 4.17189 4.23066 4.26337 4.33987 4.39073 4.43357 4.47780 4.58311 4.63591 4.65352 4.81087 4.84229 4.85500 4.88686 4.95805 4.98558 5.05364 5.06122 5.13497 5.18880 5.25890 5.28820 5.36503 5.39636 5.43140 5.54245 5.64145 5.90154 6.12484 6.16014 6.33425 6.48567 6.60106 6.80159 6.87346 7.37937 7.61025 8.90299 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008647 B = 0.003671 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3237.258444 B = 7625.695446 C = 8983.011174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.159 4.159 3 C 0.101 3.899 4 H 0.084 0.916 5 N -0.678 5.678 6 C 0.050 3.950 7 C 0.500 3.500 8 O -0.576 6.576 9 N -0.600 5.600 10 C 0.261 3.739 11 C -0.536 4.536 12 H 0.052 0.948 13 C 0.012 3.988 14 N -0.926 5.926 15 Si 0.955 3.045 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.286 1.286 19 C 0.114 3.886 20 C -0.038 4.038 21 C 0.245 3.755 22 N -0.487 5.487 23 C -0.080 4.080 24 C -0.143 4.143 25 C 0.053 3.947 26 O -0.405 6.405 27 C 0.058 3.942 28 C -0.136 4.136 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.348 0.652 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.033 0.967 38 H 0.003 0.997 39 H 0.265 0.735 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.135 0.865 43 H 0.120 0.880 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.053 0.947 48 H 0.105 0.895 49 H 0.050 0.950 50 H 0.091 0.909 51 H 0.065 0.935 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.770 -12.032 19.318 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.198 4.198 3 C -0.008 4.008 4 H 0.102 0.898 5 N -0.310 5.310 6 C -0.082 4.082 7 C 0.289 3.711 8 O -0.454 6.454 9 N -0.331 5.331 10 C 0.140 3.860 11 C -0.575 4.575 12 H 0.070 0.930 13 C -0.187 4.187 14 N -0.566 5.566 15 Si 0.781 3.219 16 H -0.193 1.193 17 H -0.199 1.199 18 H -0.212 1.212 19 C -0.011 4.011 20 C -0.079 4.079 21 C -0.072 4.072 22 N -0.165 5.165 23 C -0.099 4.099 24 C -0.181 4.181 25 C -0.023 4.023 26 O -0.325 6.325 27 C -0.019 4.019 28 C -0.174 4.174 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.167 0.833 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.051 0.949 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.153 0.847 43 H 0.138 0.862 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.113 0.887 47 H 0.071 0.929 48 H 0.123 0.877 49 H 0.068 0.932 50 H 0.109 0.891 51 H 0.084 0.916 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.824 -12.336 19.219 23.012 hybrid contribution -0.507 0.650 -1.090 1.367 sum 2.317 -11.686 18.129 21.694 Atomic orbital electron populations 1.21781 0.95610 1.02252 1.01568 1.22315 0.96344 0.97522 1.03600 1.21661 0.94419 0.93090 0.91641 0.89833 1.60138 1.19524 1.50902 1.00466 1.21903 1.02966 0.95659 0.87645 1.21271 0.78571 0.85925 0.85380 1.90673 1.43314 1.24572 1.86869 1.48081 1.57160 1.21272 1.06620 1.18766 0.94731 0.90721 0.81809 1.21778 1.03819 1.22014 1.09862 0.93002 1.25688 0.98194 0.98564 0.96276 1.70025 1.29198 1.40480 1.16912 0.85553 0.79537 0.78618 0.78223 1.19290 1.19904 1.21176 1.21482 0.93667 0.80855 1.05049 1.19833 0.97580 0.82681 1.07793 1.29146 0.92548 0.94123 0.91425 1.81271 1.10694 1.13616 1.10924 1.21233 0.94748 0.95577 0.98319 1.22240 0.96197 1.02221 0.97448 1.22759 0.94386 0.82251 1.02916 1.87889 1.80144 1.25084 1.39344 1.22642 0.94992 0.97505 0.86741 1.22010 0.95302 0.97599 1.02494 0.91813 0.92481 0.93624 0.91157 0.89776 0.83267 0.89393 0.87361 0.94908 0.97877 0.92654 0.89941 0.87900 0.84744 0.86224 0.91026 0.91170 0.88719 0.92914 0.87678 0.93197 0.89113 0.91620 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.52 71.98 0.68 -1.20 16 2 C -0.16 -1.84 4.81 30.59 0.15 -1.69 16 3 C 0.10 1.60 2.14 44.92 0.10 1.70 16 4 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 5 N -0.68 -15.16 5.18 -495.60 -2.57 -17.72 16 6 C 0.05 1.10 3.87 85.56 0.33 1.43 16 7 C 0.50 17.39 7.72 87.65 0.68 18.07 16 8 O -0.58 -26.70 15.89 -3.06 -0.05 -26.75 16 9 N -0.60 -20.83 2.46 -826.14 -2.03 -22.85 16 10 C 0.26 12.44 5.16 85.64 0.44 12.88 16 11 C -0.54 -28.83 9.39 25.60 0.24 -28.59 16 12 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 13 C 0.01 0.65 5.46 84.65 0.46 1.11 16 14 N -0.93 -53.61 13.29 21.45 0.28 -53.32 16 15 Si 0.95 43.80 29.54 68.60 2.03 45.82 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 19 C 0.11 2.68 5.17 86.38 0.45 3.13 16 20 C -0.04 -0.64 6.03 28.79 0.17 -0.47 16 21 C 0.24 5.03 15.43 89.44 1.38 6.41 16 22 N -0.49 -12.89 18.54 20.01 0.37 -12.52 16 23 C -0.08 -1.29 1.58 -10.67 -0.02 -1.30 16 24 C -0.14 -1.82 4.98 30.69 0.15 -1.66 16 25 C 0.05 0.79 6.84 72.02 0.49 1.28 16 26 O -0.41 -8.63 10.77 -148.98 -1.60 -10.24 16 27 C 0.06 1.19 6.84 72.01 0.49 1.68 16 28 C -0.14 -2.86 5.22 30.69 0.16 -2.70 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 0.65 7.19 -2.39 -0.02 0.63 16 32 H 0.07 0.78 6.28 -2.39 -0.01 0.76 16 33 H 0.08 0.77 6.34 -2.39 -0.02 0.76 16 34 H 0.35 8.22 7.41 -89.70 -0.66 7.55 16 35 H 0.09 1.36 5.52 -2.39 -0.01 1.35 16 36 H 0.11 2.17 5.40 -2.39 -0.01 2.16 16 37 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 38 H 0.00 0.17 7.43 -2.38 -0.02 0.16 16 39 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 40 H 0.08 2.17 8.07 -2.38 -0.02 2.15 16 41 H 0.10 1.82 6.43 -2.39 -0.02 1.80 16 42 H 0.13 1.56 7.23 -2.38 -0.02 1.54 16 43 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.07 1.15 6.38 -2.39 -0.02 1.14 16 45 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 46 H 0.09 0.83 6.55 -2.39 -0.02 0.82 16 47 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 48 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.07 1.72 7.72 -2.39 -0.02 1.70 16 52 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -73.30 410.71 3.05 -70.25 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.26 Total: 17.25 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 6.36 Total: 10.07 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -3.94 Total: -106.41 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.65 Total: -36.99 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -73.30 3.05 -70.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343392133.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.487 kcal (2) G-P(sol) polarization free energy of solvation -73.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds