Wall clock time and date at job start Tue Mar 31 2020 20:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46826 * 2 1 4 4 H 1.09001 * 109.47352 * 305.76365 * 3 2 1 5 5 N 1.46900 * 109.47303 * 65.77215 * 3 2 1 6 6 C 1.46901 * 110.99693 * 254.64481 * 5 3 2 7 7 C 1.50700 * 109.46780 * 184.97505 * 6 5 3 8 8 O 1.21278 * 120.00451 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99884 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00078 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.46984 * 90.00113 * 10 9 7 12 12 H 1.08007 * 120.00119 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00302 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99442 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00451 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46856 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47611 * 119.99390 * 15 13 11 18 18 H 1.48498 * 109.47391 * 240.00137 * 15 13 11 19 19 C 1.46496 * 119.99622 * 0.02562 * 9 7 6 20 20 C 1.52994 * 109.47390 * 90.00129 * 19 9 7 21 21 C 1.47202 * 109.47459 * 179.97438 * 20 19 9 22 22 N 7.34319 * 39.35852 * 348.37132 * 2 1 3 23 23 C 1.53005 * 109.46794 * 185.77013 * 3 2 1 24 24 C 1.53183 * 109.54482 * 179.97438 * 23 3 2 25 25 C 1.53092 * 109.16436 * 176.84845 * 24 23 3 26 26 O 1.42908 * 109.41225 * 302.39305 * 25 24 23 27 27 C 1.42902 * 114.10042 * 61.15647 * 26 25 24 28 28 C 1.53094 * 109.41615 * 298.84506 * 27 26 25 29 29 H 1.09003 * 109.46778 * 54.98926 * 1 2 3 30 30 H 1.08997 * 109.47163 * 174.98479 * 1 2 3 31 31 H 1.08995 * 109.47294 * 294.98704 * 1 2 3 32 32 H 1.09004 * 109.47131 * 239.99502 * 2 1 3 33 33 H 1.09004 * 109.46758 * 120.00036 * 2 1 3 34 34 H 1.00895 * 111.00482 * 18.60120 * 5 3 2 35 35 H 1.08991 * 109.47502 * 304.97643 * 6 5 3 36 36 H 1.09001 * 109.46670 * 64.98022 * 6 5 3 37 37 H 1.09000 * 109.47098 * 209.99844 * 10 9 7 38 38 H 1.09004 * 109.47162 * 330.00013 * 10 9 7 39 39 H 0.97001 * 119.99893 * 180.02562 * 14 13 11 40 40 H 1.09004 * 109.47034 * 209.99877 * 19 9 7 41 41 H 1.09004 * 109.47652 * 329.99744 * 19 9 7 42 42 H 1.08998 * 109.47250 * 299.99301 * 20 19 9 43 43 H 1.09000 * 109.47850 * 59.99603 * 20 19 9 44 44 H 1.08997 * 109.61443 * 59.77606 * 23 3 2 45 45 H 1.08998 * 109.51751 * 56.93723 * 24 23 3 46 46 H 1.08998 * 109.51905 * 296.75288 * 24 23 3 47 47 H 1.08995 * 109.47928 * 62.37118 * 25 24 23 48 48 H 1.08997 * 109.47838 * 182.41137 * 25 24 23 49 49 H 1.09003 * 109.47769 * 58.82237 * 27 26 25 50 50 H 1.08998 * 109.48185 * 178.85932 * 27 26 25 51 51 H 1.08994 * 109.51885 * 177.51488 * 28 27 26 52 52 H 1.09000 * 109.51931 * 297.63609 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5948 1.9852 -0.8339 5 7 1.6673 2.0936 1.2630 6 6 0.5577 3.0351 1.0624 7 6 0.2848 3.7712 2.3488 8 8 0.9495 3.5351 3.3354 9 7 -0.6981 4.6919 2.4030 10 6 -0.9638 5.4070 3.6536 11 6 -0.1303 6.6616 3.7017 12 1 0.5316 6.9020 2.8827 13 6 -0.2117 7.5021 4.7916 14 7 -1.0172 7.2091 5.7891 15 14 0.8209 9.0576 4.8509 16 1 1.6374 9.1571 3.6145 17 1 -0.0711 10.2404 4.9520 18 1 1.7179 9.0115 6.0335 19 6 -1.5013 4.9767 1.2114 20 6 -2.7194 4.0513 1.1843 21 6 -3.5269 4.3379 -0.0127 22 7 -4.1476 4.5613 -0.9387 23 6 3.5631 1.4449 -0.1450 24 6 4.0755 2.8885 -0.1459 25 6 5.6050 2.8789 -0.2120 26 8 6.1236 2.1371 0.8940 27 6 5.7161 0.7677 0.9206 28 6 4.1911 0.6925 1.0321 29 1 -0.3633 0.5896 -0.8417 30 1 -0.3633 -1.0237 -0.0898 31 1 -0.3633 0.4341 0.9314 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.4383 1.4098 1.9686 35 1 0.8240 3.7502 0.2842 36 1 -0.3346 2.4861 0.7616 37 1 -2.0202 5.6706 3.7041 38 1 -0.7079 4.7682 4.4989 39 1 -1.0748 7.8006 6.5558 40 1 -1.8339 6.0144 1.2369 41 1 -0.8986 4.8102 0.3185 42 1 -2.3869 3.0136 1.1587 43 1 -3.3222 4.2177 2.0771 44 1 3.8425 0.9587 -1.0797 45 1 3.7534 3.3898 0.7668 46 1 3.6768 3.4160 -1.0124 47 1 5.9256 2.4135 -1.1440 48 1 5.9771 3.9025 -0.1697 49 1 6.0382 0.2748 0.0033 50 1 6.1683 0.2705 1.7787 51 1 3.8752 -0.3504 1.0082 52 1 3.8716 1.1485 1.9692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343392155.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:10 Heat of formation + Delta-G solvation = -67.348988 kcal Electronic energy + Delta-G solvation = -30570.497448 eV Core-core repulsion = 26569.644859 eV Total energy + Delta-G solvation = -4000.852589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.92826 -39.14111 -37.38528 -36.81386 -35.19753 -33.31082 -32.83410 -32.15780 -31.03325 -30.83924 -28.40660 -27.11508 -25.20195 -24.01307 -23.89179 -23.21601 -22.34374 -21.10477 -19.63634 -18.51124 -17.65518 -16.59247 -16.44885 -16.31667 -16.05301 -15.85315 -15.68265 -15.22230 -14.73558 -14.71387 -14.42166 -14.27423 -13.97521 -13.80034 -13.65876 -13.53246 -13.10649 -12.86119 -12.60997 -12.55525 -12.44096 -12.18785 -12.07691 -11.91529 -11.74434 -11.57981 -11.47834 -11.28203 -11.22335 -11.18802 -11.00435 -10.95527 -10.82926 -10.61830 -10.33672 -10.24957 -10.16775 -9.66654 -9.50773 -8.96142 -8.45693 -8.25131 -7.81358 -6.07175 -4.11270 2.68982 2.76778 3.30032 3.32676 3.38793 3.42969 3.56603 3.89126 4.03183 4.35919 4.41823 4.46015 4.66572 4.83233 4.88683 4.94178 4.96197 5.02374 5.08056 5.12338 5.13547 5.19711 5.26896 5.29226 5.33774 5.42427 5.44205 5.45761 5.51708 5.57377 5.64932 5.67012 5.71163 5.77994 5.81110 5.87000 5.97961 6.01447 6.05632 6.09949 6.29936 6.56168 6.84140 7.07448 7.21214 7.37024 7.42621 7.45840 7.53801 7.89539 8.19419 8.29206 8.87701 9.03595 9.54503 11.01007 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008069 B = 0.003793 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3469.189672 B = 7381.126690 C = 9831.949940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.149 4.149 3 C 0.093 3.907 4 H 0.071 0.929 5 N -0.659 5.659 6 C 0.037 3.963 7 C 0.506 3.494 8 O -0.516 6.516 9 N -0.600 5.600 10 C 0.246 3.754 11 C -0.526 4.526 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.119 3.881 20 C -0.050 4.050 21 C 0.216 3.784 22 N -0.445 5.445 23 C -0.071 4.071 24 C -0.147 4.147 25 C 0.062 3.938 26 O -0.382 6.382 27 C 0.062 3.938 28 C -0.150 4.150 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.350 0.650 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.263 0.737 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.062 0.938 47 H 0.041 0.959 48 H 0.090 0.910 49 H 0.041 0.959 50 H 0.088 0.912 51 H 0.065 0.935 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.198 -15.183 -13.930 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.187 4.187 3 C -0.017 4.017 4 H 0.089 0.911 5 N -0.291 5.291 6 C -0.095 4.095 7 C 0.291 3.709 8 O -0.391 6.391 9 N -0.333 5.333 10 C 0.127 3.873 11 C -0.565 4.565 12 H 0.077 0.923 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.209 1.209 19 C -0.008 4.008 20 C -0.092 4.092 21 C -0.102 4.102 22 N -0.123 5.123 23 C -0.091 4.091 24 C -0.185 4.185 25 C -0.015 4.015 26 O -0.301 6.301 27 C -0.015 4.015 28 C -0.188 4.188 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.170 0.830 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.135 0.865 44 H 0.081 0.919 45 H 0.113 0.887 46 H 0.081 0.919 47 H 0.059 0.941 48 H 0.108 0.892 49 H 0.060 0.940 50 H 0.107 0.893 51 H 0.084 0.916 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.175 -14.331 -14.472 21.014 hybrid contribution -0.324 0.140 0.037 0.355 sum 4.851 -14.191 -14.435 20.815 Atomic orbital electron populations 1.21870 0.95865 1.01878 1.01874 1.22208 0.96007 0.97767 1.02753 1.21635 0.95045 0.92785 0.92272 0.91108 1.60092 1.39606 1.21404 1.08033 1.22072 0.93647 0.96378 0.97417 1.20270 0.80508 0.80445 0.89646 1.90703 1.46736 1.64752 1.36861 1.48221 1.32729 1.39448 1.12869 1.19322 0.96451 0.91454 0.80058 1.21456 1.24610 1.05962 1.04440 0.92335 1.24909 0.95481 0.98286 0.95301 1.69928 1.37568 1.37854 1.07998 0.86472 0.80178 0.82754 0.78206 1.19776 1.21058 1.20878 1.21270 0.90504 0.99727 0.89292 1.19913 0.96013 1.02613 0.90632 1.29167 0.93597 0.93070 0.94325 1.81252 1.10216 1.08984 1.11836 1.21155 0.94242 0.96119 0.97552 1.22170 0.95276 0.96970 1.04069 1.22570 0.93868 0.96428 0.88625 1.87950 1.72055 1.22106 1.47968 1.22550 0.94721 0.83198 1.01027 1.22232 0.95403 1.00296 1.00826 0.92714 0.92580 0.92556 0.91532 0.91098 0.82995 0.88818 0.92984 0.94884 0.93632 0.92775 0.88811 0.90845 0.87815 0.86486 0.91884 0.88735 0.91893 0.94066 0.89224 0.94032 0.89342 0.91624 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 8.95 37.16 0.33 -0.82 16 2 C -0.15 -1.10 4.71 -26.73 -0.13 -1.23 16 3 C 0.09 0.83 1.94 -67.71 -0.13 0.70 16 4 H 0.07 0.62 7.51 -51.93 -0.39 0.23 16 5 N -0.66 -7.69 3.99 -107.99 -0.43 -8.12 16 6 C 0.04 0.45 4.20 -4.98 -0.02 0.43 16 7 C 0.51 8.92 7.72 -10.98 -0.08 8.84 16 8 O -0.52 -11.68 15.89 5.56 0.09 -11.59 16 9 N -0.60 -10.62 2.46 -175.06 -0.43 -11.05 16 10 C 0.25 5.76 5.16 -5.20 -0.03 5.73 16 11 C -0.53 -14.02 9.39 -34.44 -0.32 -14.35 16 12 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 15 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.12 1.52 5.17 -4.05 -0.02 1.50 16 20 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 21 C 0.22 2.52 15.44 -20.73 -0.32 2.20 16 22 N -0.45 -6.37 18.54 42.19 0.78 -5.59 16 23 C -0.07 -0.66 2.15 -90.43 -0.19 -0.86 16 24 C -0.15 -1.60 5.31 -26.59 -0.14 -1.74 16 25 C 0.06 0.66 6.84 37.20 0.25 0.92 16 26 O -0.38 -4.93 10.77 -35.23 -0.38 -5.31 16 27 C 0.06 0.62 6.84 37.21 0.25 0.87 16 28 C -0.15 -1.46 4.86 -26.59 -0.13 -1.59 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.45 6.62 -51.93 -0.34 0.11 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.54 6.74 -51.93 -0.35 0.19 16 34 H 0.35 4.26 7.69 -39.29 -0.30 3.96 16 35 H 0.09 1.07 7.26 -51.93 -0.38 0.69 16 36 H 0.05 0.50 5.53 -51.93 -0.29 0.21 16 37 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 38 H 0.05 1.23 7.42 -51.93 -0.39 0.84 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 41 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 42 H 0.10 0.82 7.22 -51.93 -0.38 0.45 16 43 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 1.34 7.52 -51.93 -0.39 0.95 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.07 0.53 6.77 -51.93 -0.35 0.18 16 52 H 0.09 1.11 7.51 -51.93 -0.39 0.72 16 LS Contribution 413.89 15.07 6.24 6.24 Total: -1.00 -32.87 413.89 -8.26 -41.12 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.89 Total: 1.19 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -0.95 Total: 1.55 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.66 Total: -49.57 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.29 Total: -16.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.87 -8.26 -41.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343392155.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.226 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds