Wall clock time and date at job start Tue Mar 31 2020 20:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47560 * 2 1 4 4 H 1.08998 * 109.46955 * 304.98438 * 3 2 1 5 5 C 1.52996 * 109.47396 * 184.98472 * 3 2 1 6 6 N 1.46502 * 109.47197 * 180.02562 * 5 3 2 7 7 C 1.34772 * 120.00156 * 180.02562 * 6 5 3 8 8 O 1.21290 * 119.99726 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00267 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47307 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.39873 * 126.03805 * 90.02298 * 11 10 9 13 13 C 1.50702 * 125.90030 * 359.96035 * 12 11 10 14 14 N 1.30837 * 108.20136 * 179.97438 * 12 11 10 15 15 N 1.40084 * 108.20346 * 0.02562 * 14 12 11 16 16 C 1.46502 * 126.03653 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.47289 * 90.01991 * 16 15 14 18 18 H 1.08003 * 119.99962 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00388 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99980 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00352 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46662 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47132 * 119.99897 * 21 19 17 24 24 H 1.48499 * 109.46897 * 239.99920 * 21 19 17 25 25 C 1.34948 * 107.92866 * 359.75502 * 15 14 12 26 26 C 1.50700 * 126.12718 * 180.24359 * 25 15 14 27 27 O 1.42900 * 109.46763 * 64.98219 * 3 2 1 28 28 C 1.42898 * 114.00166 * 244.29175 * 27 3 2 29 29 H 1.08994 * 109.46768 * 305.91656 * 1 2 3 30 30 H 1.08997 * 109.46702 * 65.91251 * 1 2 3 31 31 H 1.08994 * 109.47054 * 185.91139 * 1 2 3 32 32 H 1.09006 * 109.47553 * 239.99909 * 2 1 3 33 33 H 1.09004 * 109.47392 * 120.00587 * 2 1 3 34 34 H 1.08992 * 109.47335 * 59.99607 * 5 3 2 35 35 H 1.09007 * 109.46942 * 300.00148 * 5 3 2 36 36 H 0.97002 * 119.99564 * 359.97438 * 6 5 3 37 37 H 1.09002 * 109.47057 * 59.99484 * 9 7 6 38 38 H 1.09007 * 109.47000 * 299.99610 * 9 7 6 39 39 H 1.08998 * 109.47041 * 299.99619 * 10 9 7 40 40 H 1.09002 * 109.47313 * 59.99849 * 10 9 7 41 41 H 1.08994 * 109.47485 * 89.99467 * 13 12 11 42 42 H 1.09000 * 109.47108 * 209.99922 * 13 12 11 43 43 H 1.09005 * 109.46917 * 329.99904 * 13 12 11 44 44 H 1.08998 * 109.47648 * 210.02253 * 16 15 14 45 45 H 1.09007 * 109.46969 * 330.02178 * 16 15 14 46 46 H 0.97000 * 119.99813 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.47020 * 270.17353 * 26 25 15 48 48 H 1.08995 * 109.47520 * 30.17674 * 26 25 15 49 49 H 1.09001 * 109.46947 * 150.17836 * 26 25 15 50 50 H 1.09003 * 109.46762 * 54.67765 * 28 27 3 51 51 H 1.08998 * 109.47147 * 174.66991 * 28 27 3 52 52 H 1.09000 * 109.47213 * 294.67433 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6057 1.9814 -0.8420 5 6 3.5649 1.4442 -0.1253 6 7 4.0534 2.8254 -0.1247 7 6 5.3742 3.0732 -0.2265 8 8 6.1585 2.1526 -0.3182 9 6 5.8766 4.4939 -0.2265 10 6 7.4014 4.4957 -0.3517 11 6 7.9038 5.9166 -0.3523 12 6 8.2711 6.6600 0.7742 13 6 8.2323 6.1787 2.2017 14 7 8.6538 7.8455 0.3744 15 7 8.5414 7.8942 -1.0211 16 6 8.8679 9.0408 -1.8725 17 6 10.3140 8.9618 -2.2888 18 1 10.9285 8.1395 -1.9531 19 6 10.8528 9.9393 -3.0983 20 7 10.1048 10.9409 -3.5067 21 14 12.6453 9.8410 -3.6149 22 1 13.2640 8.6259 -3.0267 23 1 12.7306 9.7718 -5.0958 24 1 13.3661 11.0467 -3.1334 25 6 8.0840 6.6968 -1.4430 26 6 7.8186 6.3006 -2.8726 27 8 1.6617 2.0814 1.2209 28 6 0.7562 3.1734 1.0491 29 1 -0.3633 0.6028 0.8322 30 1 -0.3632 0.4194 -0.9382 31 1 -0.3633 -1.0221 0.1058 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8535 0.9568 -1.0565 35 1 3.9993 0.9052 0.7167 36 1 3.4260 3.5616 -0.0518 37 1 5.5883 4.9812 0.7049 38 1 5.4420 5.0330 -1.0683 39 1 7.8357 3.9568 0.4903 40 1 7.6901 4.0083 -1.2829 41 1 9.1879 5.7207 2.4569 42 1 8.0456 7.0233 2.8650 43 1 7.4353 5.4438 2.3159 44 1 8.2334 9.0277 -2.7588 45 1 8.6991 9.9644 -1.3186 46 1 10.4838 11.6284 -4.0765 47 1 6.7891 6.5469 -3.1327 48 1 8.4989 6.8401 -3.5315 49 1 7.9756 5.2281 -2.9875 50 1 -0.1181 2.8362 0.4922 51 1 0.4442 3.5438 2.0256 52 1 1.2516 3.9731 0.4984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359696049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:42 Heat of formation + Delta-G solvation = -44.069284 kcal Electronic energy + Delta-G solvation = -28995.406050 eV Core-core repulsion = 24995.562944 eV Total energy + Delta-G solvation = -3999.843106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.60980 -39.91878 -38.76605 -34.95269 -34.35346 -33.69917 -33.33134 -32.46972 -30.49913 -29.30973 -28.92330 -27.08400 -26.39745 -25.86927 -24.32071 -23.13886 -22.06392 -21.74386 -20.26715 -18.78579 -18.61930 -17.45757 -17.22287 -16.69852 -16.31490 -15.78718 -15.67841 -15.32436 -14.98719 -14.47961 -14.36726 -14.20515 -14.03513 -13.71963 -13.66022 -13.17371 -12.97989 -12.88379 -12.69976 -12.53213 -12.44216 -12.24815 -12.17113 -12.00923 -11.83832 -11.79591 -11.60093 -11.56220 -11.34665 -11.19872 -11.17581 -10.92204 -10.82433 -10.70367 -10.26167 -10.14113 -9.81309 -9.69748 -9.57729 -9.23613 -8.65709 -8.16235 -7.45881 -6.26911 -4.34231 2.64907 2.76501 3.00607 3.19688 3.25333 3.27722 3.33723 3.42690 3.63973 4.26250 4.29475 4.42975 4.51807 4.77315 4.81258 4.85285 4.91916 5.06670 5.10502 5.19439 5.22806 5.23582 5.29860 5.31430 5.36979 5.42292 5.48771 5.54801 5.61155 5.70579 5.78155 5.80146 5.87875 5.98181 5.99174 6.02551 6.07591 6.22927 6.26817 6.39786 6.51674 6.56337 6.70504 6.90128 7.02495 7.12506 7.34630 7.53380 7.66531 7.88322 8.07164 8.17830 8.68002 8.76518 9.32487 10.80590 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021020 B = 0.001913 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.739367 B =14631.239944 C =14826.158550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.134 4.134 3 C 0.076 3.924 4 H 0.070 0.930 5 C 0.112 3.888 6 N -0.733 5.733 7 C 0.513 3.487 8 O -0.540 6.540 9 C -0.133 4.133 10 C -0.010 4.010 11 C -0.268 4.268 12 C 0.050 3.950 13 C -0.064 4.064 14 N -0.297 5.297 15 N -0.325 5.325 16 C 0.257 3.743 17 C -0.535 4.535 18 H 0.065 0.935 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.280 1.280 25 C 0.093 3.907 26 C -0.091 4.091 27 O -0.378 6.378 28 C 0.027 3.973 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.398 0.602 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.267 0.733 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.043 0.957 51 H 0.087 0.913 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.821 -18.176 5.640 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.018 3.982 4 H 0.088 0.912 5 C -0.013 4.013 6 N -0.386 5.386 7 C 0.301 3.699 8 O -0.416 6.416 9 C -0.173 4.173 10 C -0.049 4.049 11 C -0.280 4.280 12 C -0.114 4.114 13 C -0.123 4.123 14 N -0.121 5.121 15 N -0.105 5.105 16 C 0.139 3.861 17 C -0.574 4.574 18 H 0.083 0.917 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.038 4.038 26 C -0.149 4.149 27 O -0.296 6.296 28 C -0.069 4.069 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.232 0.768 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.093 0.907 50 H 0.062 0.938 51 H 0.106 0.894 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.690 -17.427 5.906 26.950 hybrid contribution 0.199 -0.048 -0.858 0.882 sum -19.491 -17.475 5.048 26.660 Atomic orbital electron populations 1.21748 0.95222 1.02183 1.01809 1.21809 0.96714 0.95322 1.03352 1.22474 0.93649 0.94534 0.87536 0.91191 1.21642 0.92576 0.84202 1.02837 1.45968 1.08016 1.08347 1.76267 1.21054 0.81509 0.92328 0.75014 1.90697 1.55213 1.46836 1.48897 1.21744 0.99114 0.92104 1.04346 1.19391 0.90961 0.91815 1.02760 1.19365 1.18979 0.98117 0.91572 1.21955 1.01022 0.92409 0.96023 1.20020 1.02003 1.00501 0.89744 1.77264 1.23895 1.20143 0.90773 1.49242 1.45644 1.11509 1.04111 1.19651 0.97182 0.81426 0.87864 1.21363 0.94866 1.09996 1.31141 0.91726 1.24933 0.98763 0.94674 0.95445 1.69930 1.36349 1.11848 1.34862 0.86308 0.83820 0.78361 0.78264 1.19543 1.20651 1.20621 1.20765 0.99389 0.87439 0.96219 1.20397 1.02118 1.01941 0.90469 1.87977 1.64553 1.47334 1.29774 1.22916 0.92456 0.88802 1.02770 0.92185 0.92936 0.92330 0.90511 0.90612 0.90456 0.90726 0.76819 0.89027 0.89120 0.91287 0.91399 0.91391 0.91652 0.91426 0.93111 0.93069 0.92326 0.91326 0.89996 0.90679 0.93799 0.89430 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.81 37.16 0.36 -0.36 16 2 C -0.13 -0.73 5.64 -26.73 -0.15 -0.88 16 3 C 0.08 0.48 2.32 -26.73 -0.06 0.42 16 4 H 0.07 0.36 7.61 -51.93 -0.40 -0.03 16 5 C 0.11 0.93 5.37 -4.04 -0.02 0.91 16 6 N -0.73 -6.69 5.45 -60.30 -0.33 -7.02 16 7 C 0.51 6.24 7.83 -10.99 -0.09 6.15 16 8 O -0.54 -8.58 15.98 5.55 0.09 -8.49 16 9 C -0.13 -1.55 5.68 -27.89 -0.16 -1.71 16 10 C -0.01 -0.15 4.45 -27.88 -0.12 -0.27 16 11 C -0.27 -4.84 5.35 -105.05 -0.56 -5.40 16 12 C 0.05 0.97 7.22 -82.40 -0.59 0.37 16 13 C -0.06 -0.93 10.12 36.01 0.36 -0.57 16 14 N -0.30 -6.87 12.58 33.67 0.42 -6.45 16 15 N -0.33 -7.62 3.60 -58.31 -0.21 -7.83 16 16 C 0.26 6.60 5.81 -5.19 -0.03 6.57 16 17 C -0.54 -14.84 9.39 -34.44 -0.32 -15.17 16 18 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -25.14 13.29 55.43 0.74 -24.41 16 21 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.09 1.86 6.93 -82.27 -0.57 1.29 16 26 C -0.09 -1.50 9.68 36.01 0.35 -1.15 16 27 O -0.38 -2.82 9.56 -35.23 -0.34 -3.15 16 28 C 0.03 0.14 10.46 101.05 1.06 1.19 16 29 H 0.06 0.32 7.01 -51.93 -0.36 -0.04 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.40 2.80 7.90 -40.82 -0.32 2.47 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 40 H 0.07 1.02 7.09 -51.93 -0.37 0.66 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.82 7.92 -51.93 -0.41 0.41 16 44 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 45 H 0.05 1.41 8.14 -51.92 -0.42 0.99 16 46 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.08 1.49 7.74 -51.93 -0.40 1.09 16 49 H 0.07 1.07 7.14 -51.93 -0.37 0.70 16 50 H 0.04 0.17 7.65 -51.93 -0.40 -0.22 16 51 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 52 H 0.04 0.17 7.69 -51.93 -0.40 -0.23 16 LS Contribution 428.11 15.07 6.45 6.45 Total: -1.00 -33.37 428.11 -8.12 -41.49 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -9.28 Total: 0.07 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.65 Total: -6.92 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.62 Total: -45.70 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.25 Total: -11.64 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -33.37 -8.12 -41.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359696049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.577 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds