Wall clock time and date at job start Tue Mar 31 2020 20:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47560 * 2 1 4 4 H 1.08998 * 109.46955 * 304.98438 * 3 2 1 5 5 C 1.52996 * 109.47396 * 184.98472 * 3 2 1 6 6 N 1.46502 * 109.47197 * 180.02562 * 5 3 2 7 7 C 1.34772 * 120.00156 * 180.02562 * 6 5 3 8 8 O 1.21290 * 119.99726 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00267 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47307 * 179.97438 * 9 7 6 11 11 C 1.50705 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.39873 * 126.03805 * 90.02298 * 11 10 9 13 13 C 1.50702 * 125.90030 * 359.96035 * 12 11 10 14 14 N 1.30837 * 108.20136 * 179.97438 * 12 11 10 15 15 N 1.40084 * 108.20346 * 0.02562 * 14 12 11 16 16 C 1.46502 * 126.03653 * 179.97438 * 15 14 12 17 17 C 1.50696 * 109.47289 * 90.01991 * 16 15 14 18 18 H 1.08003 * 119.99962 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00388 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99980 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00352 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46662 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47132 * 119.99897 * 21 19 17 24 24 H 1.48499 * 109.46897 * 239.99920 * 21 19 17 25 25 C 1.34948 * 107.92866 * 359.75502 * 15 14 12 26 26 C 1.50700 * 126.12718 * 180.24359 * 25 15 14 27 27 O 1.42900 * 109.46763 * 64.98219 * 3 2 1 28 28 C 1.42898 * 114.00166 * 244.29175 * 27 3 2 29 29 H 1.08994 * 109.46768 * 305.91656 * 1 2 3 30 30 H 1.08997 * 109.46702 * 65.91251 * 1 2 3 31 31 H 1.08994 * 109.47054 * 185.91139 * 1 2 3 32 32 H 1.09006 * 109.47553 * 239.99909 * 2 1 3 33 33 H 1.09004 * 109.47392 * 120.00587 * 2 1 3 34 34 H 1.08992 * 109.47335 * 59.99607 * 5 3 2 35 35 H 1.09007 * 109.46942 * 300.00148 * 5 3 2 36 36 H 0.97002 * 119.99564 * 359.97438 * 6 5 3 37 37 H 1.09002 * 109.47057 * 59.99484 * 9 7 6 38 38 H 1.09007 * 109.47000 * 299.99610 * 9 7 6 39 39 H 1.08998 * 109.47041 * 299.99619 * 10 9 7 40 40 H 1.09002 * 109.47313 * 59.99849 * 10 9 7 41 41 H 1.08994 * 109.47485 * 89.99467 * 13 12 11 42 42 H 1.09000 * 109.47108 * 209.99922 * 13 12 11 43 43 H 1.09005 * 109.46917 * 329.99904 * 13 12 11 44 44 H 1.08998 * 109.47648 * 210.02253 * 16 15 14 45 45 H 1.09007 * 109.46969 * 330.02178 * 16 15 14 46 46 H 0.97000 * 119.99813 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.47020 * 270.17353 * 26 25 15 48 48 H 1.08995 * 109.47520 * 30.17674 * 26 25 15 49 49 H 1.09001 * 109.46947 * 150.17836 * 26 25 15 50 50 H 1.09003 * 109.46762 * 54.67765 * 28 27 3 51 51 H 1.08998 * 109.47147 * 174.66991 * 28 27 3 52 52 H 1.09000 * 109.47213 * 294.67433 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6057 1.9814 -0.8420 5 6 3.5649 1.4442 -0.1253 6 7 4.0534 2.8254 -0.1247 7 6 5.3742 3.0732 -0.2265 8 8 6.1585 2.1526 -0.3182 9 6 5.8766 4.4939 -0.2265 10 6 7.4014 4.4957 -0.3517 11 6 7.9038 5.9166 -0.3523 12 6 8.2711 6.6600 0.7742 13 6 8.2323 6.1787 2.2017 14 7 8.6538 7.8455 0.3744 15 7 8.5414 7.8942 -1.0211 16 6 8.8679 9.0408 -1.8725 17 6 10.3140 8.9618 -2.2888 18 1 10.9285 8.1395 -1.9531 19 6 10.8528 9.9393 -3.0983 20 7 10.1048 10.9409 -3.5067 21 14 12.6453 9.8410 -3.6149 22 1 13.2640 8.6259 -3.0267 23 1 12.7306 9.7718 -5.0958 24 1 13.3661 11.0467 -3.1334 25 6 8.0840 6.6968 -1.4430 26 6 7.8186 6.3006 -2.8726 27 8 1.6617 2.0814 1.2209 28 6 0.7562 3.1734 1.0491 29 1 -0.3633 0.6028 0.8322 30 1 -0.3632 0.4194 -0.9382 31 1 -0.3633 -1.0221 0.1058 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8535 0.9568 -1.0565 35 1 3.9993 0.9052 0.7167 36 1 3.4260 3.5616 -0.0518 37 1 5.5883 4.9812 0.7049 38 1 5.4420 5.0330 -1.0683 39 1 7.8357 3.9568 0.4903 40 1 7.6901 4.0083 -1.2829 41 1 9.1879 5.7207 2.4569 42 1 8.0456 7.0233 2.8650 43 1 7.4353 5.4438 2.3159 44 1 8.2334 9.0277 -2.7588 45 1 8.6991 9.9644 -1.3186 46 1 10.4838 11.6284 -4.0765 47 1 6.7891 6.5469 -3.1327 48 1 8.4989 6.8401 -3.5315 49 1 7.9756 5.2281 -2.9875 50 1 -0.1181 2.8362 0.4922 51 1 0.4442 3.5438 2.0256 52 1 1.2516 3.9731 0.4984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359696049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:41 Heat of formation + Delta-G solvation = -65.440701 kcal Electronic energy + Delta-G solvation = -28996.332784 eV Core-core repulsion = 24995.562944 eV Total energy + Delta-G solvation = -4000.769840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.14524 -40.78658 -39.39441 -36.12282 -35.64845 -34.83600 -34.21759 -34.16200 -31.84132 -30.56393 -29.94899 -28.09665 -27.61734 -27.12836 -25.46044 -24.32655 -23.41287 -22.27337 -21.13623 -20.30512 -20.12783 -18.82853 -18.14515 -17.90047 -17.29339 -17.04058 -16.54510 -16.29090 -16.17055 -15.97936 -15.48908 -15.03499 -14.91458 -14.63831 -14.54303 -14.40293 -14.16336 -14.05808 -14.02006 -13.77124 -13.47994 -13.34697 -13.23172 -13.19270 -13.06153 -12.86499 -12.74133 -12.62825 -12.57060 -12.50079 -12.24430 -12.23303 -11.98939 -11.86221 -11.69588 -11.60855 -11.15820 -10.92054 -10.75904 -10.45678 -10.05888 -9.82740 -9.02154 -8.35548 -6.53250 1.18268 1.33946 1.36131 1.48598 1.71439 1.89053 1.95210 2.30144 2.32715 2.81105 2.93713 3.74802 3.79009 3.91060 3.95951 4.02114 4.09639 4.24961 4.28692 4.34687 4.39938 4.50036 4.55577 4.60967 4.61781 4.64190 4.71316 4.74855 4.77900 4.82554 4.83473 4.86174 4.87519 4.90577 4.97824 4.99663 5.06041 5.13090 5.15364 5.21640 5.31555 5.41838 5.44939 5.49307 5.50413 5.57412 5.80005 6.05786 6.27346 6.32506 6.56534 6.62714 7.12255 7.18347 7.30502 8.70493 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021020 B = 0.001913 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.739367 B =14631.239944 C =14826.158550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C 0.083 3.917 4 H 0.086 0.914 5 C 0.111 3.889 6 N -0.719 5.719 7 C 0.516 3.484 8 O -0.582 6.582 9 C -0.125 4.125 10 C -0.004 4.004 11 C -0.258 4.258 12 C 0.053 3.947 13 C -0.062 4.062 14 N -0.350 5.350 15 N -0.355 5.355 16 C 0.275 3.725 17 C -0.553 4.553 18 H 0.046 0.954 19 C 0.022 3.978 20 N -0.917 5.917 21 Si 0.971 3.029 22 H -0.275 1.275 23 H -0.265 1.265 24 H -0.274 1.274 25 C 0.079 3.921 26 C -0.087 4.087 27 O -0.398 6.398 28 C 0.021 3.979 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.410 0.590 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.048 0.952 45 H 0.019 0.981 46 H 0.274 0.726 47 H 0.094 0.906 48 H 0.058 0.942 49 H 0.098 0.902 50 H 0.054 0.946 51 H 0.091 0.909 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.027 -19.549 5.456 29.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C 0.025 3.975 4 H 0.104 0.896 5 C -0.013 4.013 6 N -0.371 5.371 7 C 0.304 3.696 8 O -0.462 6.462 9 C -0.164 4.164 10 C -0.043 4.043 11 C -0.269 4.269 12 C -0.112 4.112 13 C -0.121 4.121 14 N -0.173 5.173 15 N -0.135 5.135 16 C 0.156 3.844 17 C -0.591 4.591 18 H 0.064 0.936 19 C -0.179 4.179 20 N -0.556 5.556 21 Si 0.795 3.205 22 H -0.200 1.200 23 H -0.190 1.190 24 H -0.199 1.199 25 C -0.051 4.051 26 C -0.145 4.145 27 O -0.317 6.317 28 C -0.076 4.076 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.246 0.754 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.066 0.934 45 H 0.038 0.962 46 H 0.083 0.917 47 H 0.112 0.888 48 H 0.077 0.923 49 H 0.117 0.883 50 H 0.072 0.928 51 H 0.109 0.891 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.955 -18.799 5.728 28.729 hybrid contribution 0.491 0.314 -0.721 0.927 sum -20.463 -18.485 5.007 28.027 Atomic orbital electron populations 1.21726 0.94565 1.02411 1.01997 1.21818 0.97236 0.94806 1.03342 1.22442 0.92044 0.95218 0.87834 0.89594 1.21708 0.94059 0.83425 1.02156 1.45854 1.07318 1.09277 1.74645 1.21053 0.82080 0.91907 0.74550 1.90689 1.56409 1.47908 1.51167 1.21628 0.96812 0.92199 1.05810 1.19358 0.93126 0.89150 1.02645 1.19717 1.17602 0.99150 0.90472 1.22782 0.98705 0.91298 0.98388 1.20199 1.03653 1.01394 0.86845 1.77200 1.26501 1.22697 0.90931 1.49001 1.48164 1.12068 1.04299 1.19129 0.96225 0.81508 0.87557 1.21466 0.95871 1.09891 1.31873 0.93574 1.25736 1.02942 0.94083 0.95111 1.70005 1.38136 1.12320 1.35117 0.85320 0.78555 0.78143 0.78531 1.19994 1.19030 1.19903 1.21460 0.98812 0.86516 0.98315 1.20481 1.03017 1.02995 0.87975 1.87956 1.65152 1.48146 1.30468 1.23071 0.92598 0.88454 1.03427 0.92777 0.92082 0.91970 0.89579 0.91643 0.90369 0.92457 0.75351 0.87527 0.87648 0.91316 0.91709 0.90416 0.91077 0.88501 0.93443 0.96249 0.91725 0.88787 0.92304 0.88298 0.92751 0.89082 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.81 71.98 0.71 -0.46 16 2 C -0.13 -1.25 5.64 30.59 0.17 -1.08 16 3 C 0.08 0.88 2.32 30.59 0.07 0.95 16 4 H 0.09 0.65 7.61 -2.39 -0.02 0.63 16 5 C 0.11 1.68 5.37 86.38 0.46 2.15 16 6 N -0.72 -11.49 5.45 -463.06 -2.52 -14.02 16 7 C 0.52 11.45 7.83 87.66 0.69 12.13 16 8 O -0.58 -17.75 15.98 -3.06 -0.05 -17.80 16 9 C -0.12 -2.56 5.68 29.85 0.17 -2.39 16 10 C 0.00 -0.10 4.45 29.85 0.13 0.03 16 11 C -0.26 -9.00 5.35 -20.14 -0.11 -9.10 16 12 C 0.05 2.01 7.22 43.10 0.31 2.32 16 13 C -0.06 -1.69 10.12 71.24 0.72 -0.97 16 14 N -0.35 -16.53 12.58 -47.38 -0.60 -17.13 16 15 N -0.36 -17.12 3.60 -338.40 -1.22 -18.33 16 16 C 0.28 14.79 5.81 85.63 0.50 15.29 16 17 C -0.55 -31.68 9.39 25.60 0.24 -31.44 16 18 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 19 C 0.02 1.24 5.46 84.65 0.46 1.70 16 20 N -0.92 -52.43 13.29 21.45 0.28 -52.15 16 21 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.08 3.12 6.93 41.40 0.29 3.41 16 26 C -0.09 -2.78 9.68 71.24 0.69 -2.09 16 27 O -0.40 -5.21 9.56 -148.98 -1.42 -6.64 16 28 C 0.02 0.16 10.46 113.37 1.19 1.35 16 29 H 0.05 0.49 7.01 -2.39 -0.02 0.47 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.63 8.14 -2.38 -0.02 0.62 16 33 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.41 4.57 7.90 -92.71 -0.73 3.84 16 37 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.07 1.90 7.88 -2.39 -0.02 1.89 16 40 H 0.06 1.83 7.09 -2.39 -0.02 1.81 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.10 2.04 7.92 -2.38 -0.02 2.03 16 44 H 0.05 2.52 7.68 -2.39 -0.02 2.50 16 45 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 46 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 47 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 48 H 0.06 2.16 7.74 -2.39 -0.02 2.14 16 49 H 0.10 2.65 7.14 -2.39 -0.02 2.64 16 50 H 0.05 0.30 7.65 -2.39 -0.02 0.29 16 51 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.05 0.29 7.69 -2.39 -0.02 0.27 16 Total: -1.00 -74.33 428.11 3.36 -70.97 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.16 Total: 17.40 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 6.69 Total: -8.21 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -4.05 Total: -101.62 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -1.47 Total: -24.43 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -74.33 3.36 -70.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359696049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.531 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds