Wall clock time and date at job start Tue Mar 31 2020 20:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47421 * 2 1 4 4 H 1.09004 * 109.50851 * 305.09617 * 3 2 1 5 5 C 1.53090 * 109.50873 * 185.00362 * 3 2 1 6 6 N 1.47012 * 109.25935 * 183.17572 * 5 3 2 7 7 C 1.46904 * 111.00268 * 182.39190 * 6 5 3 8 8 C 1.50700 * 109.47411 * 169.99888 * 7 6 5 9 9 O 1.21283 * 119.99722 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00216 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00157 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47140 * 270.00107 * 11 10 8 13 13 H 1.07999 * 119.99784 * 359.97438 * 12 11 10 14 14 C 1.37868 * 120.00248 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00088 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00372 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46712 * 59.99615 * 16 14 12 18 18 H 1.48491 * 109.47265 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46693 * 300.00045 * 16 14 12 20 20 C 1.46496 * 119.99695 * 359.97438 * 10 8 7 21 21 C 1.53002 * 109.47037 * 90.00369 * 20 10 8 22 22 C 1.47206 * 109.47021 * 179.97438 * 21 20 10 23 23 N 8.98689 * 164.66561 * 298.46560 * 2 1 3 24 24 C 1.47015 * 110.75418 * 58.61640 * 6 5 3 25 25 C 1.53098 * 109.25601 * 301.38450 * 24 6 5 26 26 H 1.09007 * 109.50732 * 176.77908 * 25 24 6 27 27 C 1.52998 * 109.50804 * 296.90957 * 25 24 6 28 28 C 1.52998 * 109.47228 * 184.78254 * 27 25 24 29 29 O 1.43015 * 109.25712 * 56.84976 * 25 24 6 30 30 H 1.09008 * 109.46574 * 299.99326 * 1 2 3 31 31 H 1.08999 * 109.47346 * 59.99351 * 1 2 3 32 32 H 1.09004 * 109.47364 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46788 * 240.00427 * 2 1 3 34 34 H 1.08999 * 109.47346 * 120.00649 * 2 1 3 35 35 H 1.08997 * 109.50726 * 63.24028 * 5 3 2 36 36 H 1.09005 * 109.51110 * 303.10918 * 5 3 2 37 37 H 1.08998 * 109.47064 * 50.00056 * 7 6 5 38 38 H 1.09000 * 109.46971 * 290.00260 * 7 6 5 39 39 H 1.09000 * 109.47114 * 29.99918 * 11 10 8 40 40 H 1.08997 * 109.47404 * 149.99830 * 11 10 8 41 41 H 0.97005 * 120.00038 * 179.97438 * 15 14 12 42 42 H 1.08996 * 109.47565 * 329.99800 * 20 10 8 43 43 H 1.09004 * 109.47374 * 209.99995 * 20 10 8 44 44 H 1.08996 * 109.47407 * 59.99335 * 21 20 10 45 45 H 1.09000 * 109.46986 * 299.99564 * 21 20 10 46 46 H 1.09002 * 109.50757 * 61.32014 * 24 6 5 47 47 H 1.08995 * 109.50927 * 181.45050 * 24 6 5 48 48 H 1.08994 * 109.47621 * 304.78460 * 27 25 24 49 49 H 1.09005 * 109.46840 * 64.78349 * 27 25 24 50 50 H 1.08996 * 109.47293 * 60.00485 * 28 27 25 51 51 H 1.09001 * 109.47356 * 180.02562 * 28 27 25 52 52 H 1.09004 * 109.47188 * 300.00093 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6045 1.9825 -0.8407 5 6 3.5658 1.4452 -0.1259 6 7 4.0562 2.8289 -0.0488 7 6 5.5140 2.8813 -0.2224 8 6 5.9496 4.3150 -0.3835 9 8 5.1267 5.2055 -0.3558 10 7 7.2535 4.6076 -0.5582 11 6 7.6770 6.0013 -0.7142 12 6 7.6577 6.3718 -2.1749 13 1 7.3601 5.6418 -2.9132 14 6 8.0208 7.6421 -2.5688 15 7 8.3836 8.5308 -1.6698 16 14 7.9976 8.1010 -4.3794 17 1 6.6213 7.9395 -4.9133 18 1 8.4267 9.5138 -4.5375 19 1 8.9256 7.2147 -5.1266 20 6 8.2475 3.5320 -0.5911 21 6 8.4269 3.0472 -2.0312 22 6 9.4261 1.9667 -2.0643 23 7 10.1970 1.1328 -2.0893 24 6 3.6540 3.4543 1.2195 25 6 2.1273 3.4314 1.3318 26 1 1.8271 3.8422 2.2959 27 6 1.5195 4.2708 0.2062 28 6 0.0022 4.3457 0.3881 29 8 1.6666 2.0819 1.2235 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8528 1.0101 -1.0831 36 1 3.9991 0.8598 0.6852 37 1 5.7948 2.3145 -1.1101 38 1 5.9999 2.4501 0.6528 39 1 6.9957 6.6516 -0.1655 40 1 8.6872 6.1202 -0.3226 41 1 8.6395 9.4245 -1.9470 42 1 7.9079 2.7042 0.0313 43 1 9.1991 3.9048 -0.2121 44 1 8.7665 3.8750 -2.6536 45 1 7.4753 2.6742 -2.4102 46 1 4.0886 2.9011 2.0521 47 1 4.0053 4.4858 1.2442 48 1 1.9390 5.2763 0.2356 49 1 1.7479 3.8097 -0.7547 50 1 -0.2262 4.8068 1.3490 51 1 -0.4308 4.9433 -0.4140 52 1 -0.4174 3.3401 0.3587 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420950730.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:41 Heat of formation + Delta-G solvation = -55.807210 kcal Electronic energy + Delta-G solvation = -30813.656598 eV Core-core repulsion = 26813.304498 eV Total energy + Delta-G solvation = -4000.352100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.33121 -39.08095 -36.83219 -35.72357 -35.04537 -34.71845 -32.85670 -32.45318 -30.78341 -29.50085 -29.32305 -27.26717 -25.27717 -24.14709 -23.87142 -22.84278 -22.27930 -21.45091 -19.35294 -18.56519 -17.60991 -16.80913 -16.70523 -16.28777 -16.20331 -15.57369 -15.44709 -14.83635 -14.67172 -14.50386 -14.40037 -14.10781 -14.03868 -13.69698 -13.54357 -13.43086 -13.05538 -12.90854 -12.64728 -12.40280 -12.38058 -12.28947 -11.96260 -11.91705 -11.74621 -11.69493 -11.44309 -11.29050 -11.20440 -11.09773 -10.97996 -10.92133 -10.82514 -10.68230 -10.60184 -10.19790 -10.17173 -9.69663 -9.57560 -8.94573 -8.49239 -8.23975 -7.85827 -6.11086 -4.16270 2.79291 2.89417 3.26397 3.28234 3.33675 3.37080 3.45711 3.70912 3.92667 4.27392 4.40881 4.61740 4.78702 4.86314 4.96121 4.97726 5.04509 5.08312 5.17600 5.20409 5.22767 5.25915 5.28360 5.30744 5.38048 5.41399 5.53009 5.56993 5.62004 5.68740 5.74295 5.75309 5.78470 5.85999 5.91456 6.01815 6.07992 6.12781 6.15131 6.16316 6.32160 6.54236 6.78429 6.97494 7.02643 7.25871 7.35011 7.41299 7.65191 7.84347 8.13950 8.24336 8.81795 8.98039 9.49556 10.96972 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010563 B = 0.003384 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.101113 B = 8271.106623 C = 9891.411665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.091 3.909 4 H 0.071 0.929 5 C 0.024 3.976 6 N -0.513 5.513 7 C 0.033 3.967 8 C 0.509 3.491 9 O -0.513 6.513 10 N -0.600 5.600 11 C 0.247 3.753 12 C -0.529 4.529 13 H 0.060 0.940 14 C 0.064 3.936 15 N -0.893 5.893 16 Si 0.894 3.106 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.123 3.877 21 C -0.053 4.053 22 C 0.219 3.781 23 N -0.453 5.453 24 C 0.019 3.981 25 C 0.098 3.902 26 H 0.101 0.899 27 C -0.144 4.144 28 C -0.148 4.148 29 O -0.376 6.376 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.033 0.967 41 H 0.264 0.736 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.131 0.869 45 H 0.105 0.895 46 H 0.033 0.967 47 H 0.110 0.890 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.049 0.951 51 H 0.050 0.950 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.533 -14.622 4.993 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.033 3.967 4 H 0.089 0.911 5 C -0.105 4.105 6 N -0.237 5.237 7 C -0.098 4.098 8 C 0.295 3.705 9 O -0.388 6.388 10 N -0.332 5.332 11 C 0.128 3.872 12 C -0.568 4.568 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.003 4.003 21 C -0.095 4.095 22 C -0.099 4.099 23 N -0.130 5.130 24 C -0.109 4.109 25 C 0.041 3.959 26 H 0.119 0.881 27 C -0.181 4.181 28 C -0.205 4.205 29 O -0.295 6.295 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.105 0.895 44 H 0.149 0.851 45 H 0.123 0.877 46 H 0.051 0.949 47 H 0.128 0.872 48 H 0.096 0.904 49 H 0.095 0.905 50 H 0.068 0.932 51 H 0.069 0.931 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.085 -14.976 4.766 19.232 hybrid contribution 0.527 0.331 -0.709 0.943 sum -10.558 -14.645 4.057 18.505 Atomic orbital electron populations 1.21691 0.95129 1.01280 1.02395 1.21513 0.96845 0.94404 1.02504 1.22155 0.92415 0.93662 0.88434 0.91107 1.22837 0.96451 0.89489 1.01706 1.61826 1.10703 1.16181 1.35036 1.22144 0.88774 0.96635 1.02263 1.20119 0.82594 0.90014 0.77764 1.90654 1.50771 1.48443 1.48907 1.48245 1.05086 1.09164 1.70750 1.19336 0.95761 0.74762 0.97343 1.21375 1.45650 0.97445 0.92288 0.92191 1.24912 0.95067 0.96205 0.97686 1.69910 1.44920 1.04958 1.33360 0.86620 0.78567 0.77523 0.85102 1.20119 1.21271 1.20212 1.21254 0.94773 0.90894 0.93421 1.20006 0.94587 0.93060 1.01825 1.29293 0.93938 0.93811 0.92870 1.81184 1.11026 1.11866 1.08956 1.22995 0.96272 1.02555 0.89062 1.22278 0.91939 0.82261 0.99457 0.88096 1.21966 0.95078 1.01316 0.99781 1.21734 0.96268 1.01446 1.01073 1.87982 1.77058 1.26144 1.38292 0.91915 0.92854 0.92977 0.90708 0.91380 0.89872 0.94230 0.88336 0.92507 0.93685 0.94879 0.92609 0.91135 0.89476 0.85103 0.87745 0.94895 0.87244 0.90444 0.90484 0.93211 0.93092 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.81 37.16 0.36 -0.82 16 2 C -0.11 -0.96 5.65 -26.73 -0.15 -1.11 16 3 C 0.09 0.96 2.40 -26.69 -0.06 0.89 16 4 H 0.07 0.80 6.39 -51.93 -0.33 0.47 16 5 C 0.02 0.25 4.93 -3.72 -0.02 0.23 16 6 N -0.51 -6.76 3.91 -235.75 -0.92 -7.69 16 7 C 0.03 0.42 4.00 -4.97 -0.02 0.40 16 8 C 0.51 8.94 7.38 -10.99 -0.08 8.86 16 9 O -0.51 -11.19 13.93 5.55 0.08 -11.11 16 10 N -0.60 -10.50 2.46 -175.06 -0.43 -10.93 16 11 C 0.25 5.65 5.20 -5.19 -0.03 5.63 16 12 C -0.53 -13.29 8.93 -34.44 -0.31 -13.60 16 13 H 0.06 1.46 7.42 -52.49 -0.39 1.07 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 16 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 C 0.12 1.58 5.21 -4.04 -0.02 1.55 16 21 C -0.05 -0.64 6.03 -29.51 -0.18 -0.82 16 22 C 0.22 2.82 15.43 -20.76 -0.32 2.50 16 23 N -0.45 -6.91 18.54 42.15 0.78 -6.12 16 24 C 0.02 0.25 4.71 -3.71 -0.02 0.24 16 25 C 0.10 1.20 3.30 -26.68 -0.09 1.11 16 26 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 27 C -0.14 -1.82 5.03 -26.73 -0.13 -1.96 16 28 C -0.15 -1.60 9.81 37.16 0.36 -1.23 16 29 O -0.38 -4.48 9.37 -35.23 -0.33 -4.81 16 30 H 0.06 0.57 7.83 -51.92 -0.41 0.16 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 1.07 7.08 -51.93 -0.37 0.70 16 38 H 0.06 0.64 7.38 -51.93 -0.38 0.25 16 39 H 0.05 1.20 7.42 -51.93 -0.39 0.81 16 40 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.07 0.71 6.44 -51.93 -0.33 0.38 16 43 H 0.09 1.11 7.89 -51.93 -0.41 0.70 16 44 H 0.13 1.81 7.27 -51.93 -0.38 1.43 16 45 H 0.10 1.08 7.22 -51.93 -0.37 0.70 16 46 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.11 1.75 5.88 -51.93 -0.31 1.45 16 48 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.08 1.07 6.02 -51.93 -0.31 0.76 16 50 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.05 0.58 7.82 -51.93 -0.41 0.17 16 LS Contribution 413.40 15.07 6.23 6.23 Total: -1.00 -30.74 413.40 -8.65 -39.39 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.98 Total: 0.29 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -0.80 Total: 3.47 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.16 Total: -48.98 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.25 Total: -15.92 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.74 -8.65 -39.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420950730.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.417 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds