Wall clock time and date at job start Tue Mar 31 2020 20:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 H 1.09001 * 109.12833 * 304.48112 * 3 2 1 5 5 C 1.52918 * 109.29868 * 184.99814 * 3 2 1 6 6 C 1.53350 * 108.67365 * 188.93748 * 5 3 2 7 7 H 1.09003 * 109.67490 * 187.30453 * 6 5 3 8 8 C 1.50699 * 109.67173 * 307.79651 * 6 5 3 9 9 O 1.21286 * 119.99845 * 93.47352 * 8 6 5 10 10 N 1.34779 * 120.00198 * 273.46977 * 8 6 5 11 11 C 1.46497 * 119.99901 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47068 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.50023 * 305.06729 * 12 11 10 14 14 C 1.53039 * 109.49689 * 184.99923 * 12 11 10 15 15 C 1.53043 * 109.53726 * 178.68211 * 14 12 11 16 16 C 1.53198 * 109.31024 * 61.36795 * 15 14 12 17 17 N 1.46930 * 108.89258 * 305.29364 * 16 15 14 18 18 C 1.36931 * 120.63118 * 233.67950 * 17 16 15 19 19 H 1.08006 * 120.00001 * 27.10653 * 18 17 16 20 20 C 1.38812 * 120.00077 * 207.11436 * 18 17 16 21 21 N 1.31619 * 120.00183 * 18.38236 * 20 18 17 22 22 Si 1.86803 * 119.99957 * 198.38666 * 20 18 17 23 23 H 1.48506 * 109.47074 * 59.99675 * 22 20 18 24 24 H 1.48497 * 109.47081 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46918 * 299.99731 * 22 20 18 26 26 C 1.47202 * 118.55399 * 53.53944 * 17 16 15 27 27 C 1.53067 * 108.42654 * 67.53071 * 6 5 3 28 28 C 1.50182 * 109.88782 * 311.08559 * 27 6 5 29 29 O 1.21273 * 118.24776 * 197.57762 * 28 27 6 30 30 N 1.33355 * 123.50396 * 17.61591 * 28 27 6 31 31 H 1.08991 * 109.47376 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46956 * 299.99992 * 1 2 3 33 33 H 1.09008 * 109.46686 * 59.99658 * 1 2 3 34 34 H 1.09000 * 109.46956 * 240.00008 * 2 1 3 35 35 H 1.09003 * 109.47048 * 120.00625 * 2 1 3 36 36 H 1.09001 * 109.60546 * 69.18387 * 5 3 2 37 37 H 1.08999 * 109.60698 * 308.68764 * 5 3 2 38 38 H 0.96996 * 119.99714 * 0.02562 * 10 8 6 39 39 H 1.08997 * 109.47347 * 60.00282 * 11 10 8 40 40 H 1.08997 * 109.47709 * 300.00288 * 11 10 8 41 41 H 1.09001 * 109.45887 * 58.66674 * 14 12 11 42 42 H 1.09000 * 109.46223 * 298.70408 * 14 12 11 43 43 H 1.09001 * 109.49766 * 301.42130 * 15 14 12 44 44 H 1.08998 * 109.52328 * 181.33325 * 15 14 12 45 45 H 1.09001 * 109.58351 * 65.15246 * 16 15 14 46 46 H 1.08993 * 109.58715 * 185.43424 * 16 15 14 47 47 H 0.96998 * 120.00060 * 180.02562 * 21 20 18 48 48 H 1.09005 * 109.53288 * 186.67242 * 26 17 16 49 49 H 1.09008 * 109.67848 * 66.36690 * 26 17 16 50 50 H 1.08998 * 109.40052 * 71.22792 * 27 6 5 51 51 H 1.08996 * 109.40424 * 190.97298 * 27 6 5 52 52 H 0.97003 * 117.94539 * 177.75203 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6095 1.9735 -0.8489 5 6 3.5641 1.4396 -0.1257 6 6 4.0781 2.8666 0.1000 7 1 5.1462 2.9100 -0.1128 8 6 3.3415 3.8203 -0.8050 9 8 2.3528 4.3965 -0.4029 10 7 3.7813 4.0329 -2.0611 11 6 3.0649 4.9595 -2.9410 12 6 3.7660 5.0176 -4.2997 13 1 4.8151 5.2762 -4.1570 14 6 3.0936 6.0765 -5.1765 15 6 3.8148 6.1585 -6.5239 16 6 3.7134 4.8058 -7.2359 17 7 4.2268 3.7583 -6.3425 18 6 5.2095 2.9025 -6.7632 19 1 5.9094 3.2159 -7.5237 20 6 5.3060 1.6320 -6.2124 21 7 4.2791 1.1116 -5.5743 22 14 6.8932 0.6608 -6.3767 23 1 8.0026 1.4139 -5.7383 24 1 6.7395 -0.6557 -5.7071 25 1 7.1994 0.4526 -7.8147 26 6 3.6641 3.6521 -4.9865 27 6 3.8272 3.2456 1.5617 28 6 2.4089 2.9245 1.9366 29 8 1.9460 3.4441 2.9298 30 7 1.6314 2.0979 1.2360 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.8482 1.1020 -1.1225 37 1 3.9917 0.7741 0.6241 38 1 4.5718 3.5718 -2.3827 39 1 3.0569 5.9532 -2.4931 40 1 2.0401 4.6137 -3.0759 41 1 3.1430 7.0449 -4.6787 42 1 2.0506 5.8047 -5.3389 43 1 4.8637 6.4059 -6.3606 44 1 3.3506 6.9291 -7.1392 45 1 2.6716 4.5989 -7.4807 46 1 4.3061 4.8289 -8.1503 47 1 4.3467 0.2240 -5.1891 48 1 4.2262 2.9130 -4.4155 49 1 2.6184 3.3499 -5.0456 50 1 4.5073 2.6849 2.2029 51 1 4.0038 4.3130 1.6944 52 1 0.7378 1.9220 1.5699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544617358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:55 Heat of formation + Delta-G solvation = -78.585741 kcal Electronic energy + Delta-G solvation = -31287.135141 eV Core-core repulsion = 27285.795290 eV Total energy + Delta-G solvation = -4001.339852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.00362 -39.05642 -37.80274 -36.89728 -34.71210 -33.96754 -33.11228 -32.05733 -30.89950 -29.87579 -29.15713 -26.31644 -25.37797 -24.72876 -23.19349 -22.20648 -21.73201 -20.97360 -20.63709 -19.39162 -18.73985 -17.33872 -16.87491 -16.52656 -16.30736 -15.61818 -15.51065 -15.05807 -14.99884 -14.38252 -14.12755 -13.99423 -13.86569 -13.68218 -13.61927 -13.54852 -13.19684 -12.95329 -12.68790 -12.39546 -12.26085 -12.22048 -12.04767 -11.93365 -11.52511 -11.34586 -11.27399 -11.09533 -11.07754 -10.92439 -10.78943 -10.56282 -10.32269 -10.25154 -9.99989 -9.78764 -9.67976 -9.54164 -9.48312 -8.98092 -8.78858 -8.57032 -6.77256 -5.89431 -3.29894 2.72087 2.82480 3.29204 3.30261 3.35167 3.37357 3.39850 4.36760 4.39541 4.40137 4.46822 4.64296 4.89681 4.95085 5.01561 5.10542 5.20471 5.24954 5.29310 5.37249 5.48213 5.48655 5.51654 5.52927 5.57581 5.62662 5.72404 5.74265 5.79727 5.84334 5.92479 5.99504 6.04933 6.11456 6.22437 6.24278 6.34688 6.44101 6.58551 6.66787 6.75679 6.79248 6.84994 6.94558 7.21341 7.44855 7.49625 7.69593 7.71593 8.33120 8.33305 8.38589 9.10662 9.74252 10.32282 11.18818 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.003674 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.680922 B = 7618.928639 C = 8829.063267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C 0.138 3.862 4 H 0.079 0.921 5 C -0.122 4.122 6 C -0.115 4.115 7 H 0.106 0.894 8 C 0.512 3.488 9 O -0.539 6.539 10 N -0.716 5.716 11 C 0.131 3.869 12 C -0.128 4.128 13 H 0.069 0.931 14 C -0.100 4.100 15 C -0.133 4.133 16 C 0.143 3.857 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.898 3.102 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.180 3.820 27 C -0.116 4.116 28 C 0.539 3.461 29 O -0.569 6.569 30 N -0.705 5.705 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.405 0.595 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.017 0.983 46 H 0.052 0.948 47 H 0.253 0.747 48 H 0.087 0.913 49 H 0.018 0.982 50 H 0.105 0.895 51 H 0.103 0.897 52 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 0.450 9.491 9.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C 0.033 3.967 4 H 0.097 0.903 5 C -0.160 4.160 6 C -0.137 4.137 7 H 0.124 0.876 8 C 0.297 3.703 9 O -0.416 6.416 10 N -0.367 5.367 11 C 0.007 3.993 12 C -0.148 4.148 13 H 0.088 0.912 14 C -0.139 4.139 15 C -0.172 4.172 16 C 0.016 3.984 17 N -0.315 5.315 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.728 3.272 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.054 3.946 27 C -0.156 4.156 28 C 0.326 3.674 29 O -0.449 6.449 30 N -0.357 5.357 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.241 0.759 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.035 0.965 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.036 0.964 50 H 0.123 0.877 51 H 0.121 0.879 52 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -1.918 1.003 10.226 10.452 hybrid contribution 0.871 -0.867 -0.373 1.284 sum -1.047 0.136 9.853 9.909 Atomic orbital electron populations 1.21791 0.95419 1.02054 1.02012 1.21917 0.96655 0.95394 1.03342 1.21009 0.94888 0.93441 0.87363 0.90314 1.21923 0.94495 0.94663 1.04895 1.21482 1.02028 0.95500 0.94668 0.87555 1.20385 0.85026 0.82459 0.82463 1.90732 1.26143 1.49852 1.74866 1.46067 1.31762 1.46056 1.12764 1.21381 0.96109 0.92220 0.89579 1.22135 0.99241 1.00619 0.92822 0.91231 1.21335 0.99330 0.97270 0.95927 1.21989 1.00009 0.98929 0.96288 1.20930 0.96601 0.87780 0.93042 1.44090 1.43677 1.34693 1.09016 1.19166 1.04775 0.92728 1.21443 0.91724 1.24973 0.97204 0.95852 1.01465 1.70052 1.27835 1.15931 1.40772 0.86435 0.83692 0.79065 0.78011 1.21061 1.21606 1.20890 1.20826 0.97071 0.91145 0.85579 1.21487 0.94390 1.04723 0.95021 1.19755 0.88200 0.77243 0.82173 1.90715 1.74448 1.51725 1.27985 1.45448 1.17823 1.47012 1.25461 0.92233 0.92948 0.92101 0.89870 0.91315 0.88383 0.89645 0.75941 0.92379 0.91831 0.93425 0.92505 0.92427 0.93050 0.96505 0.92932 0.93660 0.89489 0.96378 0.87699 0.87908 0.76835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.75 37.16 0.36 -1.03 16 2 C -0.13 -1.23 5.58 -26.73 -0.15 -1.38 16 3 C 0.14 1.53 2.35 -68.38 -0.16 1.36 16 4 H 0.08 1.06 7.21 -51.93 -0.37 0.69 16 5 C -0.12 -1.18 4.93 -26.59 -0.13 -1.31 16 6 C -0.12 -1.22 3.07 -91.56 -0.28 -1.50 16 7 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 8 C 0.51 7.22 5.69 -10.98 -0.06 7.16 16 9 O -0.54 -9.49 14.46 5.55 0.08 -9.41 16 10 N -0.72 -10.09 5.33 -60.30 -0.32 -10.41 16 11 C 0.13 2.02 5.07 -4.04 -0.02 1.99 16 12 C -0.13 -2.14 2.38 -90.50 -0.21 -2.35 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C -0.10 -1.57 5.17 -26.69 -0.14 -1.71 16 15 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 16 C 0.14 2.84 6.51 -3.71 -0.02 2.82 16 17 N -0.59 -13.78 3.01 -172.09 -0.52 -14.30 16 18 C -0.25 -6.45 9.59 -15.06 -0.14 -6.59 16 19 H 0.07 1.65 7.89 -52.48 -0.41 1.23 16 20 C 0.00 0.09 4.89 -17.43 -0.09 0.00 16 21 N -0.90 -23.71 11.23 55.49 0.62 -23.08 16 22 Si 0.90 20.03 29.59 -169.99 -5.03 15.00 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.18 3.79 4.42 -3.56 -0.02 3.78 16 27 C -0.12 -1.32 5.24 -28.10 -0.15 -1.47 16 28 C 0.54 7.85 6.38 -11.87 -0.08 7.78 16 29 O -0.57 -10.51 17.78 5.56 0.10 -10.41 16 30 N -0.71 -8.83 4.89 -54.86 -0.27 -9.10 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.45 6.63 -51.93 -0.34 0.11 16 33 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 38 H 0.41 5.45 7.71 -40.82 -0.31 5.14 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 47 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 48 H 0.09 1.97 5.27 -51.93 -0.27 1.70 16 49 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 50 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.10 1.25 8.10 -51.93 -0.42 0.83 16 52 H 0.40 4.77 6.98 -40.82 -0.28 4.49 16 LS Contribution 399.11 15.07 6.01 6.01 Total: -1.00 -31.81 399.11 -9.93 -41.74 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -9.16 Total: 8.75 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -1.45 Total: 5.22 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.48 Total: -56.89 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.18 Total: -19.82 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.81 -9.93 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544617358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.851 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds