Wall clock time and date at job start Tue Mar 31 2020 20:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 H 1.09001 * 109.12833 * 304.48112 * 3 2 1 5 5 C 1.52918 * 109.29868 * 184.99814 * 3 2 1 6 6 C 1.53350 * 108.67365 * 188.93748 * 5 3 2 7 7 H 1.09003 * 109.67490 * 187.30453 * 6 5 3 8 8 C 1.50699 * 109.67173 * 307.79651 * 6 5 3 9 9 O 1.21286 * 119.99845 * 93.47352 * 8 6 5 10 10 N 1.34779 * 120.00198 * 273.46977 * 8 6 5 11 11 C 1.46497 * 119.99901 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47068 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.50023 * 305.06729 * 12 11 10 14 14 C 1.53039 * 109.49689 * 184.99923 * 12 11 10 15 15 C 1.53043 * 109.53726 * 178.68211 * 14 12 11 16 16 C 1.53198 * 109.31024 * 61.36795 * 15 14 12 17 17 N 1.46930 * 108.89258 * 305.29364 * 16 15 14 18 18 C 1.36931 * 120.63118 * 233.67950 * 17 16 15 19 19 H 1.08006 * 120.00001 * 27.10653 * 18 17 16 20 20 C 1.38812 * 120.00077 * 207.11436 * 18 17 16 21 21 N 1.31619 * 120.00183 * 18.38236 * 20 18 17 22 22 Si 1.86803 * 119.99957 * 198.38666 * 20 18 17 23 23 H 1.48506 * 109.47074 * 59.99675 * 22 20 18 24 24 H 1.48497 * 109.47081 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46918 * 299.99731 * 22 20 18 26 26 C 1.47202 * 118.55399 * 53.53944 * 17 16 15 27 27 C 1.53067 * 108.42654 * 67.53071 * 6 5 3 28 28 C 1.50182 * 109.88782 * 311.08559 * 27 6 5 29 29 O 1.21273 * 118.24776 * 197.57762 * 28 27 6 30 30 N 1.33355 * 123.50396 * 17.61591 * 28 27 6 31 31 H 1.08991 * 109.47376 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46956 * 299.99992 * 1 2 3 33 33 H 1.09008 * 109.46686 * 59.99658 * 1 2 3 34 34 H 1.09000 * 109.46956 * 240.00008 * 2 1 3 35 35 H 1.09003 * 109.47048 * 120.00625 * 2 1 3 36 36 H 1.09001 * 109.60546 * 69.18387 * 5 3 2 37 37 H 1.08999 * 109.60698 * 308.68764 * 5 3 2 38 38 H 0.96996 * 119.99714 * 0.02562 * 10 8 6 39 39 H 1.08997 * 109.47347 * 60.00282 * 11 10 8 40 40 H 1.08997 * 109.47709 * 300.00288 * 11 10 8 41 41 H 1.09001 * 109.45887 * 58.66674 * 14 12 11 42 42 H 1.09000 * 109.46223 * 298.70408 * 14 12 11 43 43 H 1.09001 * 109.49766 * 301.42130 * 15 14 12 44 44 H 1.08998 * 109.52328 * 181.33325 * 15 14 12 45 45 H 1.09001 * 109.58351 * 65.15246 * 16 15 14 46 46 H 1.08993 * 109.58715 * 185.43424 * 16 15 14 47 47 H 0.96998 * 120.00060 * 180.02562 * 21 20 18 48 48 H 1.09005 * 109.53288 * 186.67242 * 26 17 16 49 49 H 1.09008 * 109.67848 * 66.36690 * 26 17 16 50 50 H 1.08998 * 109.40052 * 71.22792 * 27 6 5 51 51 H 1.08996 * 109.40424 * 190.97298 * 27 6 5 52 52 H 0.97003 * 117.94539 * 177.75203 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6095 1.9735 -0.8489 5 6 3.5641 1.4396 -0.1257 6 6 4.0781 2.8666 0.1000 7 1 5.1462 2.9100 -0.1128 8 6 3.3415 3.8203 -0.8050 9 8 2.3528 4.3965 -0.4029 10 7 3.7813 4.0329 -2.0611 11 6 3.0649 4.9595 -2.9410 12 6 3.7660 5.0176 -4.2997 13 1 4.8151 5.2762 -4.1570 14 6 3.0936 6.0765 -5.1765 15 6 3.8148 6.1585 -6.5239 16 6 3.7134 4.8058 -7.2359 17 7 4.2268 3.7583 -6.3425 18 6 5.2095 2.9025 -6.7632 19 1 5.9094 3.2159 -7.5237 20 6 5.3060 1.6320 -6.2124 21 7 4.2791 1.1116 -5.5743 22 14 6.8932 0.6608 -6.3767 23 1 8.0026 1.4139 -5.7383 24 1 6.7395 -0.6557 -5.7071 25 1 7.1994 0.4526 -7.8147 26 6 3.6641 3.6521 -4.9865 27 6 3.8272 3.2456 1.5617 28 6 2.4089 2.9245 1.9366 29 8 1.9460 3.4441 2.9298 30 7 1.6314 2.0979 1.2360 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.8482 1.1020 -1.1225 37 1 3.9917 0.7741 0.6241 38 1 4.5718 3.5718 -2.3827 39 1 3.0569 5.9532 -2.4931 40 1 2.0401 4.6137 -3.0759 41 1 3.1430 7.0449 -4.6787 42 1 2.0506 5.8047 -5.3389 43 1 4.8637 6.4059 -6.3606 44 1 3.3506 6.9291 -7.1392 45 1 2.6716 4.5989 -7.4807 46 1 4.3061 4.8289 -8.1503 47 1 4.3467 0.2240 -5.1891 48 1 4.2262 2.9130 -4.4155 49 1 2.6184 3.3499 -5.0456 50 1 4.5073 2.6849 2.2029 51 1 4.0038 4.3130 1.6944 52 1 0.7378 1.9220 1.5699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544617358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:54 Heat of formation + Delta-G solvation = -99.724902 kcal Electronic energy + Delta-G solvation = -31288.051804 eV Core-core repulsion = 27285.795290 eV Total energy + Delta-G solvation = -4002.256514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.04657 -40.27875 -39.26258 -37.95365 -36.10873 -34.93184 -34.72253 -33.04635 -32.42216 -31.48921 -30.02543 -27.58455 -27.13057 -25.77689 -24.23325 -23.78451 -22.67625 -22.28165 -21.79382 -20.78113 -19.90849 -18.67812 -18.34672 -17.62648 -17.34833 -16.94690 -16.68638 -16.50030 -16.14887 -15.81156 -15.47886 -15.20708 -15.08695 -14.85667 -14.74230 -14.52003 -14.45860 -14.28698 -13.99399 -13.76387 -13.65690 -13.43499 -12.97339 -12.89580 -12.89271 -12.83371 -12.47151 -12.36562 -12.21823 -12.16944 -11.96861 -11.88396 -11.77209 -11.76410 -11.55215 -11.28810 -11.08238 -10.82062 -10.68871 -10.48812 -10.05187 -10.01009 -8.62942 -7.81375 -5.25461 1.52971 1.54783 1.61345 1.61468 1.72239 2.22958 2.39192 2.56686 3.30358 3.48829 3.53574 3.58471 3.64414 3.73973 3.96218 4.01956 4.09507 4.14476 4.16306 4.19776 4.36015 4.40308 4.49166 4.54990 4.58681 4.66236 4.71098 4.75573 4.82085 4.82808 4.88739 4.90423 4.91222 5.04400 5.04803 5.09478 5.15827 5.21353 5.24593 5.34585 5.37653 5.40064 5.52065 5.58059 5.71776 5.80635 5.82909 6.41891 6.44464 6.57832 7.20798 7.24268 7.26374 7.90265 8.44171 9.24596 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.003674 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.680922 B = 7618.928639 C = 8829.063267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.128 4.128 3 C 0.137 3.863 4 H 0.048 0.952 5 C -0.119 4.119 6 C -0.107 4.107 7 H 0.142 0.858 8 C 0.509 3.491 9 O -0.578 6.578 10 N -0.713 5.713 11 C 0.140 3.860 12 C -0.111 4.111 13 H 0.072 0.928 14 C -0.100 4.100 15 C -0.121 4.121 16 C 0.135 3.865 17 N -0.611 5.611 18 C -0.270 4.270 19 H 0.061 0.939 20 C -0.037 4.037 21 N -0.926 5.926 22 Si 0.959 3.041 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.191 3.809 27 C -0.112 4.112 28 C 0.529 3.471 29 O -0.617 6.617 30 N -0.699 5.699 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.410 0.590 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.008 0.992 46 H 0.049 0.951 47 H 0.253 0.747 48 H 0.070 0.930 49 H -0.015 1.015 50 H 0.142 0.858 51 H 0.094 0.906 52 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.706 0.325 9.964 9.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.166 4.166 3 C 0.032 3.968 4 H 0.066 0.934 5 C -0.157 4.157 6 C -0.128 4.128 7 H 0.159 0.841 8 C 0.296 3.704 9 O -0.458 6.458 10 N -0.364 5.364 11 C 0.016 3.984 12 C -0.131 4.131 13 H 0.090 0.910 14 C -0.138 4.138 15 C -0.160 4.160 16 C 0.010 3.990 17 N -0.334 5.334 18 C -0.400 4.400 19 H 0.078 0.922 20 C -0.233 4.233 21 N -0.571 5.571 22 Si 0.788 3.212 23 H -0.201 1.201 24 H -0.216 1.216 25 H -0.213 1.213 26 C 0.065 3.935 27 C -0.152 4.152 28 C 0.318 3.682 29 O -0.501 6.501 30 N -0.349 5.349 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.246 0.754 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.026 0.974 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.088 0.912 49 H 0.003 0.997 50 H 0.160 0.840 51 H 0.112 0.888 52 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.011 0.876 10.657 10.693 hybrid contribution 0.187 -0.835 -0.630 1.062 sum 0.176 0.041 10.027 10.029 Atomic orbital electron populations 1.21804 0.95591 1.02679 1.01338 1.21877 0.96523 0.94013 1.04209 1.21057 0.96182 0.94025 0.85490 0.93386 1.21986 0.93139 0.94568 1.05977 1.21538 1.03466 0.94705 0.93119 0.84058 1.21058 0.84562 0.82292 0.82470 1.90720 1.27962 1.51531 1.75549 1.46057 1.31713 1.45803 1.12800 1.21188 0.95117 0.92914 0.89209 1.21896 0.99694 0.98318 0.93215 0.90989 1.21363 0.98727 0.98140 0.95608 1.21866 1.00462 0.97143 0.96562 1.21093 0.95730 0.89024 0.93164 1.44373 1.43622 1.35154 1.10273 1.19426 1.05430 0.93488 1.21610 0.92175 1.25603 0.99666 0.96591 1.01477 1.70181 1.29278 1.16119 1.41525 0.85487 0.80540 0.77683 0.77527 1.20149 1.21593 1.21276 1.20622 0.94473 0.93233 0.85128 1.21537 0.92838 1.04821 0.95978 1.20413 0.89570 0.76670 0.81559 1.90686 1.75687 1.53578 1.30167 1.45502 1.17672 1.46355 1.25397 0.90935 0.92859 0.93586 0.89570 0.89675 0.88307 0.86617 0.75376 0.91452 0.93631 0.90525 0.92975 0.92391 0.90160 0.97441 0.93203 0.93825 0.91192 0.99664 0.84050 0.88763 0.77000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.75 71.98 0.70 -2.05 16 2 C -0.13 -2.19 5.58 30.59 0.17 -2.01 16 3 C 0.14 2.95 2.35 45.10 0.11 3.06 16 4 H 0.05 1.34 7.21 -2.39 -0.02 1.33 16 5 C -0.12 -2.04 4.93 30.68 0.15 -1.88 16 6 C -0.11 -2.02 3.07 -11.40 -0.03 -2.06 16 7 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 8 C 0.51 14.03 5.69 87.66 0.50 14.53 16 9 O -0.58 -20.57 14.46 -3.05 -0.04 -20.61 16 10 N -0.71 -19.65 5.33 -463.06 -2.47 -22.12 16 11 C 0.14 4.26 5.07 86.38 0.44 4.70 16 12 C -0.11 -3.63 2.38 -10.71 -0.03 -3.66 16 13 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.10 -2.96 5.17 30.62 0.16 -2.80 16 15 C -0.12 -3.72 6.08 30.68 0.19 -3.53 16 16 C 0.14 5.36 6.51 86.36 0.56 5.92 16 17 N -0.61 -28.64 3.01 -698.35 -2.10 -30.74 16 18 C -0.27 -13.87 9.59 84.03 0.81 -13.07 16 19 H 0.06 3.08 7.89 -2.91 -0.02 3.05 16 20 C -0.04 -1.88 4.89 84.86 0.42 -1.47 16 21 N -0.93 -49.11 11.23 21.65 0.24 -48.87 16 22 Si 0.96 40.78 29.59 68.60 2.03 42.81 16 23 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 26 C 0.19 8.19 4.42 86.31 0.38 8.57 16 27 C -0.11 -2.32 5.24 29.71 0.16 -2.17 16 28 C 0.53 15.18 6.38 87.72 0.56 15.74 16 29 O -0.62 -23.13 17.78 -3.01 -0.05 -23.19 16 30 N -0.70 -17.37 4.89 -446.65 -2.18 -19.55 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 0.91 6.63 -2.39 -0.02 0.90 16 33 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.12 1.36 8.11 -2.39 -0.02 1.34 16 38 H 0.41 10.60 7.71 -92.71 -0.71 9.88 16 39 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 47 H 0.25 12.89 8.31 -92.71 -0.77 12.12 16 48 H 0.07 3.21 5.27 -2.38 -0.01 3.20 16 49 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 50 H 0.14 1.90 8.14 -2.39 -0.02 1.89 16 51 H 0.09 2.17 8.10 -2.39 -0.02 2.15 16 52 H 0.39 9.68 6.98 -92.71 -0.65 9.04 16 Total: -1.00 -70.86 399.11 0.21 -70.65 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: -0.45 Total: 33.82 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 5.23 Total: 17.80 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -6.51 Total: -121.28 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.10 Total: -43.79 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -70.86 0.21 -70.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544617358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.071 kcal (2) G-P(sol) polarization free energy of solvation -70.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds