Wall clock time and date at job start Tue Mar 31 2020 20:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47406 * 2 1 4 4 H 1.09000 * 109.30043 * 305.42401 * 3 2 1 5 5 C 1.52932 * 109.12861 * 185.92101 * 3 2 1 6 6 C 1.53353 * 108.66279 * 189.02307 * 5 3 2 7 7 H 1.08997 * 109.70186 * 307.79105 * 6 5 3 8 8 C 1.50700 * 109.67280 * 187.27408 * 6 5 3 9 9 O 1.21279 * 120.00025 * 1.03624 * 8 6 5 10 10 N 1.34772 * 119.99990 * 181.02981 * 8 6 5 11 11 C 1.46503 * 120.00315 * 180.02562 * 10 8 6 12 12 C 1.52992 * 109.47216 * 180.02562 * 11 10 8 13 13 H 1.09005 * 109.52758 * 54.92182 * 12 11 10 14 14 C 1.53040 * 109.49833 * 175.00405 * 12 11 10 15 15 C 1.53045 * 109.54024 * 181.31868 * 14 12 11 16 16 C 1.53195 * 109.31053 * 298.63157 * 15 14 12 17 17 N 1.46924 * 108.89115 * 54.56584 * 16 15 14 18 18 C 1.36931 * 120.63251 * 126.46207 * 17 16 15 19 19 H 1.08006 * 120.00144 * 332.69162 * 18 17 16 20 20 C 1.38817 * 120.00305 * 152.68926 * 18 17 16 21 21 N 1.31623 * 119.99975 * 159.39666 * 20 18 17 22 22 Si 1.86800 * 119.99816 * 339.39686 * 20 18 17 23 23 H 1.48500 * 109.47149 * 92.91771 * 22 20 18 24 24 H 1.48502 * 109.46858 * 212.91507 * 22 20 18 25 25 H 1.48494 * 109.47186 * 332.91535 * 22 20 18 26 26 C 1.46964 * 118.71668 * 306.63644 * 17 16 15 27 27 C 1.53077 * 108.42301 * 67.54571 * 6 5 3 28 28 C 1.50173 * 109.88882 * 311.09652 * 27 6 5 29 29 O 1.21279 * 118.24365 * 197.56316 * 28 27 6 30 30 N 1.33353 * 123.51226 * 17.58837 * 28 27 6 31 31 H 1.09003 * 109.47157 * 299.99888 * 1 2 3 32 32 H 1.09001 * 109.47001 * 59.99855 * 1 2 3 33 33 H 1.08997 * 109.47347 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47157 * 240.00112 * 2 1 3 35 35 H 1.08997 * 109.47682 * 120.00752 * 2 1 3 36 36 H 1.09000 * 109.60234 * 69.27528 * 5 3 2 37 37 H 1.09003 * 109.61839 * 308.77955 * 5 3 2 38 38 H 0.97008 * 119.99801 * 0.02562 * 10 8 6 39 39 H 1.09002 * 109.46449 * 60.00383 * 11 10 8 40 40 H 1.08998 * 109.47168 * 300.00861 * 11 10 8 41 41 H 1.08997 * 109.46257 * 61.29350 * 14 12 11 42 42 H 1.09007 * 109.45854 * 301.33558 * 14 12 11 43 43 H 1.09002 * 109.49281 * 178.68163 * 15 14 12 44 44 H 1.08992 * 109.49671 * 58.58422 * 15 14 12 45 45 H 1.08998 * 109.58581 * 174.42155 * 16 15 14 46 46 H 1.08999 * 109.58588 * 294.70432 * 16 15 14 47 47 H 0.96997 * 119.99675 * 180.02562 * 21 20 18 48 48 H 1.08994 * 109.47060 * 293.58040 * 26 17 16 49 49 H 1.09005 * 109.59483 * 173.21408 * 26 17 16 50 50 H 1.09001 * 109.40075 * 71.22663 * 27 6 5 51 51 H 1.08999 * 109.39854 * 190.97519 * 27 6 5 52 52 H 0.97002 * 117.95351 * 177.77748 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5979 1.9809 -0.8383 5 6 3.5620 1.4358 -0.1490 6 6 4.0836 2.8599 0.0783 7 1 3.5433 3.5559 -0.5634 8 6 5.5561 2.9173 -0.2374 9 8 6.1321 1.9234 -0.6263 10 7 6.2328 4.0731 -0.0875 11 6 7.6641 4.1292 -0.3948 12 6 8.1851 5.5451 -0.1412 13 1 7.9473 5.8434 0.8799 14 6 9.7020 5.5748 -0.3418 15 6 10.2286 6.9831 -0.0564 16 6 9.5917 7.9710 -1.0389 17 7 8.1300 7.8457 -0.9589 18 6 7.3469 8.9456 -0.7305 19 1 7.7465 9.7899 -0.1882 20 6 6.0395 8.9757 -1.1961 21 7 5.1689 9.8046 -0.6601 22 14 5.5158 7.8396 -2.5834 23 1 4.9557 6.5879 -2.0134 24 1 4.4824 8.5124 -3.4108 25 1 6.6928 7.5153 -3.4287 26 6 7.5250 6.5167 -1.1247 27 6 3.8565 3.2297 1.5462 28 6 2.4433 2.9097 1.9409 29 8 1.9974 3.4237 2.9449 30 7 1.6525 2.0904 1.2468 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.8298 1.1041 -1.1522 37 1 3.9992 0.7640 0.5897 38 1 5.7721 4.8680 0.2239 39 1 7.8216 3.8655 -1.4407 40 1 8.2003 3.4255 0.2420 41 1 9.9378 5.3004 -1.3700 42 1 10.1724 4.8661 0.3399 43 1 11.3119 6.9977 -0.1767 44 1 9.9715 7.2678 0.9638 45 1 9.8861 8.9874 -0.7776 46 1 9.9230 7.7436 -2.0521 47 1 4.2553 9.8253 -0.9852 48 1 7.6858 6.1691 -2.1451 49 1 6.4558 6.5736 -0.9199 50 1 4.5447 2.6627 2.1731 51 1 4.0381 4.2956 1.6833 52 1 0.7636 1.9149 1.5932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544617360.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:58 Heat of formation + Delta-G solvation = -76.130024 kcal Electronic energy + Delta-G solvation = -30619.504991 eV Core-core repulsion = 26618.271627 eV Total energy + Delta-G solvation = -4001.233364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.98521 -39.54210 -38.16408 -37.24815 -34.90699 -34.23487 -33.10857 -32.35647 -31.13832 -30.57322 -29.31174 -26.52521 -25.36591 -25.21545 -23.37271 -22.43722 -22.09804 -20.97831 -20.29919 -19.54693 -19.34558 -17.68411 -17.09070 -16.83813 -16.59068 -15.94304 -15.58490 -15.54756 -15.05381 -14.76216 -14.40560 -14.15739 -14.06440 -13.92416 -13.84612 -13.67271 -13.32903 -13.28253 -13.10366 -12.86726 -12.47559 -12.30550 -12.12493 -11.80539 -11.67449 -11.63696 -11.51793 -11.39786 -11.33946 -11.15323 -10.84811 -10.65214 -10.57346 -10.35405 -10.18058 -9.97752 -9.75152 -9.62124 -9.50001 -9.34651 -8.99183 -8.67927 -7.03294 -6.00982 -3.36777 2.44285 2.57410 3.00398 3.14137 3.20136 3.41987 3.44921 4.12960 4.24941 4.30855 4.43574 4.44765 4.66772 4.68742 4.74769 4.80039 4.96639 5.09230 5.11849 5.15284 5.19600 5.25587 5.26767 5.39067 5.41072 5.45289 5.53764 5.56552 5.60613 5.71445 5.74450 5.77292 5.80001 5.89101 5.98484 6.05599 6.08208 6.25946 6.29282 6.44617 6.51006 6.53251 6.53644 6.64787 6.66927 6.92272 7.08704 7.51364 7.90083 8.00036 8.18348 8.27322 8.88187 9.65600 10.04057 11.14842 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012935 B = 0.003213 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.107066 B = 8712.831537 C = 9645.902577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.135 4.135 3 C 0.137 3.863 4 H 0.079 0.921 5 C -0.110 4.110 6 C -0.116 4.116 7 H 0.107 0.893 8 C 0.520 3.480 9 O -0.543 6.543 10 N -0.722 5.722 11 C 0.125 3.875 12 C -0.120 4.120 13 H 0.081 0.919 14 C -0.101 4.101 15 C -0.135 4.135 16 C 0.146 3.854 17 N -0.606 5.606 18 C -0.259 4.259 19 H 0.086 0.914 20 C 0.023 3.977 21 N -0.906 5.906 22 Si 0.881 3.119 23 H -0.290 1.290 24 H -0.303 1.303 25 H -0.272 1.272 26 C 0.134 3.866 27 C -0.128 4.128 28 C 0.526 3.474 29 O -0.553 6.553 30 N -0.716 5.716 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.406 0.594 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.022 0.978 47 H 0.263 0.737 48 H 0.025 0.975 49 H 0.070 0.930 50 H 0.107 0.893 51 H 0.111 0.889 52 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 -19.293 0.573 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.173 4.173 3 C 0.032 3.968 4 H 0.097 0.903 5 C -0.148 4.148 6 C -0.137 4.137 7 H 0.126 0.874 8 C 0.306 3.694 9 O -0.421 6.421 10 N -0.374 5.374 11 C 0.002 3.998 12 C -0.141 4.141 13 H 0.099 0.901 14 C -0.139 4.139 15 C -0.174 4.174 16 C 0.020 3.980 17 N -0.329 5.329 18 C -0.387 4.387 19 H 0.104 0.896 20 C -0.176 4.176 21 N -0.549 5.549 22 Si 0.711 3.289 23 H -0.218 1.218 24 H -0.232 1.232 25 H -0.197 1.197 26 C 0.008 3.992 27 C -0.169 4.169 28 C 0.313 3.687 29 O -0.431 6.431 30 N -0.369 5.369 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.241 0.759 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.040 0.960 47 H 0.073 0.927 48 H 0.043 0.957 49 H 0.088 0.912 50 H 0.125 0.875 51 H 0.129 0.871 52 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -2.701 -19.556 0.715 19.754 hybrid contribution -0.991 -0.235 -0.663 1.215 sum -3.692 -19.791 0.051 20.132 Atomic orbital electron populations 1.21815 0.95344 1.02244 1.02001 1.21914 0.96472 0.95355 1.03590 1.21109 0.95478 0.93719 0.86461 0.90279 1.21771 0.92785 0.95178 1.05032 1.21495 0.94336 1.00105 0.97788 0.87449 1.20286 0.88541 0.83142 0.77469 1.90684 1.70142 1.34807 1.46466 1.46152 1.11061 1.12563 1.67586 1.21471 0.79747 0.97626 1.00994 1.21986 0.96526 0.93288 1.02279 0.90107 1.21344 0.94102 0.97366 1.01070 1.21989 0.98686 0.95563 1.01144 1.20954 0.84025 0.97539 0.95452 1.44342 1.01445 1.02777 1.84315 1.18944 0.94001 0.96015 1.29784 0.89624 1.25285 0.96323 0.97322 0.98640 1.69836 1.03576 1.39812 1.41645 0.87000 0.77795 0.79490 0.84570 1.21773 1.23152 1.19694 1.21381 0.97172 0.85408 0.95261 1.21677 0.94309 1.05365 0.95504 1.19972 0.87916 0.77884 0.82964 1.90790 1.74511 1.51396 1.26362 1.45686 1.18324 1.47681 1.25249 0.92752 0.92228 0.92148 0.90035 0.91011 0.88604 0.90055 0.75865 0.91605 0.91559 0.92342 0.92753 0.92550 0.91915 0.91928 0.96027 0.92726 0.95690 0.91230 0.87527 0.87105 0.76499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 9.76 37.16 0.36 -0.44 16 2 C -0.14 -0.77 5.56 -26.74 -0.15 -0.92 16 3 C 0.14 1.00 3.08 -68.37 -0.21 0.79 16 4 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 5 C -0.11 -0.96 3.99 -26.58 -0.11 -1.07 16 6 C -0.12 -1.22 2.60 -91.55 -0.24 -1.46 16 7 H 0.11 1.10 8.13 -51.93 -0.42 0.68 16 8 C 0.52 6.99 7.14 -10.99 -0.08 6.92 16 9 O -0.54 -8.69 15.89 5.56 0.09 -8.60 16 10 N -0.72 -10.07 5.24 -60.30 -0.32 -10.38 16 11 C 0.13 1.79 5.07 -4.04 -0.02 1.77 16 12 C -0.12 -1.91 2.38 -90.50 -0.22 -2.12 16 13 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 14 C -0.10 -1.44 5.17 -26.69 -0.14 -1.57 16 15 C -0.13 -2.06 6.08 -26.61 -0.16 -2.22 16 16 C 0.15 2.75 6.51 -3.71 -0.02 2.73 16 17 N -0.61 -13.72 2.78 -172.28 -0.48 -14.20 16 18 C -0.26 -6.99 10.03 -15.06 -0.15 -7.14 16 19 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 20 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 21 N -0.91 -26.96 13.97 55.49 0.78 -26.18 16 22 Si 0.88 21.56 24.35 -169.99 -4.14 17.42 16 23 H -0.29 -6.57 6.62 56.52 0.37 -6.19 16 24 H -0.30 -7.67 7.11 56.52 0.40 -7.26 16 25 H -0.27 -6.67 6.63 56.52 0.37 -6.30 16 26 C 0.13 2.70 3.29 -3.69 -0.01 2.68 16 27 C -0.13 -1.39 5.18 -28.10 -0.15 -1.54 16 28 C 0.53 6.43 7.71 -11.87 -0.09 6.34 16 29 O -0.55 -9.09 17.78 5.56 0.10 -8.99 16 30 N -0.72 -6.57 5.12 -54.85 -0.28 -6.85 16 31 H 0.05 0.28 6.67 -51.93 -0.35 -0.06 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.10 0.85 7.89 -51.93 -0.41 0.44 16 37 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.41 5.64 7.40 -40.82 -0.30 5.34 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.03 0.52 7.07 -51.93 -0.37 0.16 16 49 H 0.07 1.51 3.72 -51.93 -0.19 1.32 16 50 H 0.11 1.08 8.09 -51.93 -0.42 0.66 16 51 H 0.11 1.24 7.92 -51.93 -0.41 0.82 16 52 H 0.40 3.35 7.04 -40.82 -0.29 3.06 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -33.44 396.44 -8.85 -42.29 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -9.10 Total: 6.21 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.47 Total: 3.31 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.30 Total: -57.61 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.19 Total: -17.59 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.42 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.44 -8.85 -42.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544617360.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.842 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds