Wall clock time and date at job start Tue Mar 31 2020 20:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47406 * 2 1 4 4 H 1.09000 * 109.30043 * 305.42401 * 3 2 1 5 5 C 1.52932 * 109.12861 * 185.92101 * 3 2 1 6 6 C 1.53353 * 108.66279 * 189.02307 * 5 3 2 7 7 H 1.08997 * 109.70186 * 307.79105 * 6 5 3 8 8 C 1.50700 * 109.67280 * 187.27408 * 6 5 3 9 9 O 1.21279 * 120.00025 * 1.03624 * 8 6 5 10 10 N 1.34772 * 119.99990 * 181.02981 * 8 6 5 11 11 C 1.46503 * 120.00315 * 180.02562 * 10 8 6 12 12 C 1.52992 * 109.47216 * 180.02562 * 11 10 8 13 13 H 1.09005 * 109.52758 * 54.92182 * 12 11 10 14 14 C 1.53040 * 109.49833 * 175.00405 * 12 11 10 15 15 C 1.53045 * 109.54024 * 181.31868 * 14 12 11 16 16 C 1.53195 * 109.31053 * 298.63157 * 15 14 12 17 17 N 1.46924 * 108.89115 * 54.56584 * 16 15 14 18 18 C 1.36931 * 120.63251 * 126.46207 * 17 16 15 19 19 H 1.08006 * 120.00144 * 332.69162 * 18 17 16 20 20 C 1.38817 * 120.00305 * 152.68926 * 18 17 16 21 21 N 1.31623 * 119.99975 * 159.39666 * 20 18 17 22 22 Si 1.86800 * 119.99816 * 339.39686 * 20 18 17 23 23 H 1.48500 * 109.47149 * 92.91771 * 22 20 18 24 24 H 1.48502 * 109.46858 * 212.91507 * 22 20 18 25 25 H 1.48494 * 109.47186 * 332.91535 * 22 20 18 26 26 C 1.46964 * 118.71668 * 306.63644 * 17 16 15 27 27 C 1.53077 * 108.42301 * 67.54571 * 6 5 3 28 28 C 1.50173 * 109.88882 * 311.09652 * 27 6 5 29 29 O 1.21279 * 118.24365 * 197.56316 * 28 27 6 30 30 N 1.33353 * 123.51226 * 17.58837 * 28 27 6 31 31 H 1.09003 * 109.47157 * 299.99888 * 1 2 3 32 32 H 1.09001 * 109.47001 * 59.99855 * 1 2 3 33 33 H 1.08997 * 109.47347 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47157 * 240.00112 * 2 1 3 35 35 H 1.08997 * 109.47682 * 120.00752 * 2 1 3 36 36 H 1.09000 * 109.60234 * 69.27528 * 5 3 2 37 37 H 1.09003 * 109.61839 * 308.77955 * 5 3 2 38 38 H 0.97008 * 119.99801 * 0.02562 * 10 8 6 39 39 H 1.09002 * 109.46449 * 60.00383 * 11 10 8 40 40 H 1.08998 * 109.47168 * 300.00861 * 11 10 8 41 41 H 1.08997 * 109.46257 * 61.29350 * 14 12 11 42 42 H 1.09007 * 109.45854 * 301.33558 * 14 12 11 43 43 H 1.09002 * 109.49281 * 178.68163 * 15 14 12 44 44 H 1.08992 * 109.49671 * 58.58422 * 15 14 12 45 45 H 1.08998 * 109.58581 * 174.42155 * 16 15 14 46 46 H 1.08999 * 109.58588 * 294.70432 * 16 15 14 47 47 H 0.96997 * 119.99675 * 180.02562 * 21 20 18 48 48 H 1.08994 * 109.47060 * 293.58040 * 26 17 16 49 49 H 1.09005 * 109.59483 * 173.21408 * 26 17 16 50 50 H 1.09001 * 109.40075 * 71.22663 * 27 6 5 51 51 H 1.08999 * 109.39854 * 190.97519 * 27 6 5 52 52 H 0.97002 * 117.95351 * 177.77748 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5979 1.9809 -0.8383 5 6 3.5620 1.4358 -0.1490 6 6 4.0836 2.8599 0.0783 7 1 3.5433 3.5559 -0.5634 8 6 5.5561 2.9173 -0.2374 9 8 6.1321 1.9234 -0.6263 10 7 6.2328 4.0731 -0.0875 11 6 7.6641 4.1292 -0.3948 12 6 8.1851 5.5451 -0.1412 13 1 7.9473 5.8434 0.8799 14 6 9.7020 5.5748 -0.3418 15 6 10.2286 6.9831 -0.0564 16 6 9.5917 7.9710 -1.0389 17 7 8.1300 7.8457 -0.9589 18 6 7.3469 8.9456 -0.7305 19 1 7.7465 9.7899 -0.1882 20 6 6.0395 8.9757 -1.1961 21 7 5.1689 9.8046 -0.6601 22 14 5.5158 7.8396 -2.5834 23 1 4.9557 6.5879 -2.0134 24 1 4.4824 8.5124 -3.4108 25 1 6.6928 7.5153 -3.4287 26 6 7.5250 6.5167 -1.1247 27 6 3.8565 3.2297 1.5462 28 6 2.4433 2.9097 1.9409 29 8 1.9974 3.4237 2.9449 30 7 1.6525 2.0904 1.2468 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.8298 1.1041 -1.1522 37 1 3.9992 0.7640 0.5897 38 1 5.7721 4.8680 0.2239 39 1 7.8216 3.8655 -1.4407 40 1 8.2003 3.4255 0.2420 41 1 9.9378 5.3004 -1.3700 42 1 10.1724 4.8661 0.3399 43 1 11.3119 6.9977 -0.1767 44 1 9.9715 7.2678 0.9638 45 1 9.8861 8.9874 -0.7776 46 1 9.9230 7.7436 -2.0521 47 1 4.2553 9.8253 -0.9852 48 1 7.6858 6.1691 -2.1451 49 1 6.4558 6.5736 -0.9199 50 1 4.5447 2.6627 2.1731 51 1 4.0381 4.2956 1.6833 52 1 0.7636 1.9149 1.5932 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544617360.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:57 Heat of formation + Delta-G solvation = -99.961957 kcal Electronic energy + Delta-G solvation = -30620.538421 eV Core-core repulsion = 26618.271627 eV Total energy + Delta-G solvation = -4002.266794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.90012 -40.63588 -39.55856 -38.11527 -36.23346 -35.11588 -34.72435 -33.09970 -32.80581 -32.03085 -30.03826 -27.66892 -27.14704 -26.13171 -24.39814 -23.84248 -22.75789 -22.31399 -21.42547 -20.71959 -20.32554 -18.84058 -18.53632 -18.02827 -17.52745 -17.18614 -16.96857 -16.53370 -16.21459 -15.90093 -15.53843 -15.49430 -15.12630 -15.02860 -14.82179 -14.75435 -14.61046 -14.37534 -14.36932 -13.94584 -13.83040 -13.52393 -13.34935 -13.07694 -12.99392 -12.55000 -12.40353 -12.35700 -12.19160 -12.15132 -12.07559 -11.88973 -11.78784 -11.69161 -11.59151 -11.46093 -11.29600 -11.24445 -10.68241 -10.61624 -10.15487 -10.11800 -8.91548 -8.16007 -5.47505 1.24256 1.40910 1.47383 1.48777 1.53750 2.12433 2.21113 2.39465 3.04598 3.31585 3.34318 3.47822 3.54193 3.66167 3.84775 3.94162 3.96498 4.00980 4.03852 4.16324 4.25559 4.31480 4.45109 4.47684 4.50540 4.51607 4.63493 4.63582 4.68864 4.74382 4.80212 4.84209 4.89755 4.94107 4.99000 5.10385 5.11557 5.15039 5.20963 5.25223 5.25458 5.31903 5.40914 5.42952 5.60041 5.76725 5.87685 6.13556 6.24419 6.42409 6.92867 7.10373 7.11260 7.63374 8.04071 9.03807 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012935 B = 0.003213 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.107066 B = 8712.831537 C = 9645.902577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.129 4.129 3 C 0.138 3.862 4 H 0.092 0.908 5 C -0.105 4.105 6 C -0.109 4.109 7 H 0.114 0.886 8 C 0.522 3.478 9 O -0.567 6.567 10 N -0.727 5.727 11 C 0.132 3.868 12 C -0.108 4.108 13 H 0.073 0.927 14 C -0.098 4.098 15 C -0.125 4.125 16 C 0.137 3.863 17 N -0.621 5.621 18 C -0.248 4.248 19 H 0.050 0.950 20 C -0.031 4.031 21 N -0.955 5.955 22 Si 0.942 3.058 23 H -0.262 1.262 24 H -0.315 1.315 25 H -0.270 1.270 26 C 0.131 3.869 27 C -0.124 4.124 28 C 0.524 3.476 29 O -0.602 6.602 30 N -0.703 5.703 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.406 0.594 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.032 0.968 47 H 0.261 0.739 48 H 0.025 0.975 49 H 0.052 0.948 50 H 0.113 0.887 51 H 0.105 0.895 52 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.231 -22.353 -0.447 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.167 4.167 3 C 0.034 3.966 4 H 0.110 0.890 5 C -0.143 4.143 6 C -0.131 4.131 7 H 0.132 0.868 8 C 0.309 3.691 9 O -0.446 6.446 10 N -0.378 5.378 11 C 0.008 3.992 12 C -0.128 4.128 13 H 0.091 0.909 14 C -0.136 4.136 15 C -0.164 4.164 16 C 0.013 3.987 17 N -0.345 5.345 18 C -0.378 4.378 19 H 0.068 0.932 20 C -0.226 4.226 21 N -0.601 5.601 22 Si 0.771 3.229 23 H -0.188 1.188 24 H -0.245 1.245 25 H -0.195 1.195 26 C 0.006 3.994 27 C -0.164 4.164 28 C 0.312 3.688 29 O -0.485 6.485 30 N -0.355 5.355 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.241 0.759 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.070 0.930 48 H 0.043 0.957 49 H 0.070 0.930 50 H 0.131 0.869 51 H 0.123 0.877 52 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.924 -22.681 -0.334 22.765 hybrid contribution -1.126 0.756 -0.341 1.399 sum -3.051 -21.925 -0.675 22.146 Atomic orbital electron populations 1.21824 0.94856 1.02737 1.02032 1.21880 0.96808 0.93946 1.04115 1.21272 0.94709 0.94920 0.85682 0.88988 1.21766 0.93523 0.93785 1.05235 1.21489 0.92547 1.01568 0.97458 0.86781 1.20644 0.89365 0.82439 0.76619 1.90673 1.70857 1.35471 1.47593 1.46247 1.11137 1.12824 1.67554 1.21394 0.80102 0.96529 1.01190 1.21804 0.97698 0.93019 1.00278 0.90902 1.21376 0.92592 0.97208 1.02465 1.21890 1.00311 0.95058 0.99158 1.21169 0.82046 0.98392 0.97129 1.44491 1.02781 1.02640 1.84606 1.18868 0.94324 0.96470 1.28119 0.93216 1.25854 0.96490 0.99489 1.00798 1.69970 1.03962 1.42705 1.43446 0.85994 0.77032 0.78689 0.81175 1.18799 1.24466 1.19536 1.21406 0.96564 0.85096 0.96380 1.21615 0.93716 1.05168 0.95892 1.20161 0.88420 0.77759 0.82467 1.90768 1.75497 1.53593 1.28612 1.45690 1.18127 1.46375 1.25322 0.93061 0.91877 0.91481 0.88741 0.91281 0.88127 0.90260 0.75916 0.91819 0.90037 0.91457 0.89725 0.89341 0.92978 0.93097 0.95008 0.92984 0.95698 0.93024 0.86862 0.87682 0.75938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.76 71.98 0.70 -0.54 16 2 C -0.13 -1.14 5.56 30.59 0.17 -0.97 16 3 C 0.14 1.69 3.08 45.11 0.14 1.83 16 4 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 5 C -0.10 -1.60 3.99 30.69 0.12 -1.47 16 6 C -0.11 -2.10 2.60 -11.40 -0.03 -2.13 16 7 H 0.11 2.08 8.13 -2.39 -0.02 2.06 16 8 C 0.52 12.96 7.14 87.66 0.63 13.58 16 9 O -0.57 -16.80 15.89 -3.03 -0.05 -16.85 16 10 N -0.73 -18.81 5.24 -463.07 -2.43 -21.23 16 11 C 0.13 3.40 5.07 86.38 0.44 3.83 16 12 C -0.11 -3.16 2.38 -10.72 -0.03 -3.19 16 13 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 14 C -0.10 -2.45 5.17 30.62 0.16 -2.29 16 15 C -0.13 -3.48 6.08 30.67 0.19 -3.30 16 16 C 0.14 5.01 6.51 86.36 0.56 5.57 16 17 N -0.62 -27.90 2.78 -698.99 -1.94 -29.84 16 18 C -0.25 -13.72 10.03 84.04 0.84 -12.88 16 19 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 20 C -0.03 -1.79 5.23 84.86 0.44 -1.34 16 21 N -0.95 -58.73 13.97 21.65 0.30 -58.43 16 22 Si 0.94 44.89 24.35 68.60 1.67 46.56 16 23 H -0.26 -11.14 6.62 99.48 0.66 -10.48 16 24 H -0.32 -15.57 7.11 99.48 0.71 -14.86 16 25 H -0.27 -12.67 6.63 99.48 0.66 -12.01 16 26 C 0.13 5.06 3.29 86.36 0.28 5.35 16 27 C -0.12 -2.57 5.18 29.71 0.15 -2.41 16 28 C 0.52 12.51 7.71 87.71 0.68 13.18 16 29 O -0.60 -20.05 17.78 -3.03 -0.05 -20.10 16 30 N -0.70 -11.91 5.12 -446.62 -2.29 -14.19 16 31 H 0.05 0.44 6.67 -2.39 -0.02 0.42 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.10 1.50 7.89 -2.39 -0.02 1.48 16 37 H 0.08 1.27 8.10 -2.39 -0.02 1.25 16 38 H 0.41 10.70 7.40 -92.70 -0.69 10.02 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 46 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 48 H 0.03 0.98 7.07 -2.39 -0.02 0.96 16 49 H 0.05 2.18 3.72 -2.38 -0.01 2.17 16 50 H 0.11 2.19 8.09 -2.39 -0.02 2.17 16 51 H 0.10 2.31 7.92 -2.39 -0.02 2.29 16 52 H 0.40 6.28 7.04 -92.71 -0.65 5.63 16 Total: -1.00 -74.11 396.44 0.15 -73.96 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: -0.52 Total: 27.31 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 5.45 Total: 12.82 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -6.35 Total: -123.70 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.10 Total: -36.95 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.67 Total: 46.56 kcal Total: -74.11 0.15 -73.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544617360.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.003 kcal (2) G-P(sol) polarization free energy of solvation -74.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds