Wall clock time and date at job start Tue Mar 31 2020 20:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47215 * 2 1 4 4 H 1.09005 * 109.29798 * 305.41981 * 3 2 1 5 5 C 1.52914 * 109.30245 * 186.03798 * 3 2 1 6 6 C 1.53351 * 108.67609 * 188.93223 * 5 3 2 7 7 H 1.08999 * 109.67668 * 307.80005 * 6 5 3 8 8 C 1.50697 * 109.70593 * 187.28080 * 6 5 3 9 9 O 1.21286 * 120.00020 * 1.01567 * 8 6 5 10 10 N 1.34771 * 119.99946 * 181.01724 * 8 6 5 11 11 C 1.46499 * 120.00174 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.47502 * 179.97438 * 11 10 8 13 13 H 1.08992 * 109.50148 * 305.00756 * 12 11 10 14 14 C 1.53043 * 109.49985 * 184.93726 * 12 11 10 15 15 C 1.53035 * 109.53853 * 178.68584 * 14 12 11 16 16 C 1.53198 * 109.31406 * 61.36405 * 15 14 12 17 17 N 1.46923 * 108.77490 * 305.37043 * 16 15 14 18 18 C 1.36936 * 120.62825 * 233.60567 * 17 16 15 19 19 H 1.07995 * 120.00160 * 151.84053 * 18 17 16 20 20 C 1.38821 * 119.99947 * 331.84774 * 18 17 16 21 21 N 1.31616 * 119.99516 * 343.05789 * 20 18 17 22 22 Si 1.86798 * 119.99912 * 163.06599 * 20 18 17 23 23 H 1.48492 * 109.47428 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47208 * 119.99980 * 22 20 18 25 25 H 1.48500 * 109.47022 * 239.99552 * 22 20 18 26 26 C 1.46929 * 118.76999 * 53.58308 * 17 16 15 27 27 C 1.53072 * 108.42232 * 67.53194 * 6 5 3 28 28 C 1.50184 * 109.88881 * 311.09976 * 27 6 5 29 29 O 1.21280 * 118.24251 * 197.60215 * 28 27 6 30 30 N 1.33353 * 123.50957 * 17.58634 * 28 27 6 31 31 H 1.08997 * 109.47282 * 300.00073 * 1 2 3 32 32 H 1.08993 * 109.47280 * 60.00139 * 1 2 3 33 33 H 1.08995 * 109.46845 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47721 * 119.99885 * 2 1 3 35 35 H 1.09000 * 109.47358 * 240.00454 * 2 1 3 36 36 H 1.09001 * 109.60391 * 308.68775 * 5 3 2 37 37 H 1.09006 * 109.60475 * 69.17959 * 5 3 2 38 38 H 0.96996 * 120.00252 * 0.02562 * 10 8 6 39 39 H 1.09004 * 109.47503 * 300.00644 * 11 10 8 40 40 H 1.09004 * 109.46951 * 60.00095 * 11 10 8 41 41 H 1.09005 * 109.45938 * 298.71040 * 14 12 11 42 42 H 1.08996 * 109.45667 * 58.68186 * 14 12 11 43 43 H 1.08996 * 109.49995 * 181.31270 * 15 14 12 44 44 H 1.09006 * 109.49934 * 301.41654 * 15 14 12 45 45 H 1.09003 * 109.58241 * 65.14870 * 16 15 14 46 46 H 1.08995 * 109.58976 * 185.43056 * 16 15 14 47 47 H 0.97003 * 119.99270 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.61829 * 186.64281 * 26 17 16 49 49 H 1.09000 * 109.56000 * 66.21143 * 26 17 16 50 50 H 1.09000 * 109.40385 * 190.97613 * 27 6 5 51 51 H 1.08996 * 109.33418 * 71.18061 * 27 6 5 52 52 H 0.96995 * 117.94499 * 177.79720 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9809 -0.8384 5 6 3.5616 1.4406 -0.1518 6 6 4.0793 2.8664 0.0737 7 1 3.5354 3.5600 -0.5675 8 6 5.5509 2.9289 -0.2447 9 8 6.1298 1.9367 -0.6340 10 7 6.2238 4.0872 -0.0968 11 6 7.6545 4.1479 -0.4058 12 6 8.1707 5.5663 -0.1556 13 1 7.5727 6.2770 -0.7258 14 6 9.6338 5.6623 -0.5940 15 6 10.1414 7.0892 -0.3746 16 6 10.0599 7.4324 1.1162 17 7 8.6847 7.2030 1.5798 18 6 7.9919 8.1922 2.2252 19 1 6.9141 8.2244 2.1646 20 6 8.6749 9.1538 2.9572 21 7 9.9246 8.9448 3.3135 22 14 7.8204 10.7442 3.4367 23 1 6.4290 10.7343 2.9183 24 1 7.7969 10.8668 4.9165 25 1 8.5563 11.8960 2.8562 26 6 8.0662 5.8924 1.3376 27 6 3.8535 3.2365 1.5417 28 6 2.4418 2.9126 1.9390 29 8 1.9959 3.4265 2.9429 30 7 1.6524 2.0905 1.2467 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 4.0020 0.7706 0.5866 37 1 3.8286 1.1091 -1.1553 38 1 5.7609 4.8806 0.2149 39 1 8.1939 3.4469 0.2313 40 1 7.8119 3.8836 -1.4515 41 1 10.2352 4.9685 -0.0065 42 1 9.7137 5.4072 -1.6507 43 1 11.1762 7.1627 -0.7087 44 1 9.5248 7.7861 -0.9425 45 1 10.7450 6.7954 1.6757 46 1 10.3286 8.4780 1.2658 47 1 10.4020 9.6169 3.8247 48 1 7.0172 5.9227 1.6325 49 1 8.5885 5.1300 1.9155 50 1 4.0322 4.3031 1.6778 51 1 4.5443 2.6709 2.1668 52 1 0.7646 1.9128 1.5945 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544617362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:01 Heat of formation + Delta-G solvation = -81.527171 kcal Electronic energy + Delta-G solvation = -30060.196028 eV Core-core repulsion = 26058.728627 eV Total energy + Delta-G solvation = -4001.467401 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.03040 -39.54796 -37.89930 -37.27165 -34.88953 -34.28353 -32.98554 -32.39108 -30.49887 -30.38893 -29.33571 -26.38656 -25.35208 -25.07679 -23.28307 -22.21134 -22.06797 -20.96833 -20.32847 -19.59727 -19.04592 -17.71763 -17.12528 -16.76065 -16.50340 -15.91418 -15.57209 -15.26282 -14.86000 -14.81349 -14.50118 -14.19302 -14.02263 -13.89892 -13.72418 -13.52800 -13.43870 -13.14733 -12.81514 -12.40635 -12.37270 -12.21844 -12.18362 -11.84769 -11.70191 -11.46101 -11.39598 -11.32843 -11.20128 -11.02862 -10.74012 -10.51467 -10.40852 -10.23398 -10.20187 -9.95520 -9.76656 -9.53066 -9.44615 -9.39729 -9.00464 -8.48778 -6.69559 -5.81051 -3.24225 2.40267 2.53305 2.95476 3.11084 3.36004 3.44286 3.45954 4.07543 4.20056 4.26172 4.38684 4.46795 4.61562 4.62677 4.72649 4.90248 5.00248 5.09224 5.10250 5.20800 5.26762 5.36575 5.39455 5.41840 5.43771 5.49558 5.56220 5.59333 5.66140 5.72110 5.78855 5.84464 5.90467 5.96013 6.19574 6.28581 6.33983 6.44148 6.48875 6.55804 6.66794 6.73775 6.82505 6.92794 7.04128 7.37231 7.48538 7.65320 7.77301 7.95920 8.15663 8.42373 9.18771 9.82062 10.38617 11.27248 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013688 B = 0.002640 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.125759 B =10602.809079 C =12341.390776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.139 3.861 4 H 0.078 0.922 5 C -0.111 4.111 6 C -0.112 4.112 7 H 0.106 0.894 8 C 0.518 3.482 9 O -0.542 6.542 10 N -0.720 5.720 11 C 0.126 3.874 12 C -0.118 4.118 13 H 0.073 0.927 14 C -0.099 4.099 15 C -0.142 4.142 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.154 3.846 27 C -0.129 4.129 28 C 0.525 3.475 29 O -0.551 6.551 30 N -0.717 5.717 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.404 0.596 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.017 0.983 46 H 0.086 0.914 47 H 0.253 0.747 48 H 0.050 0.950 49 H 0.018 0.982 50 H 0.111 0.889 51 H 0.108 0.892 52 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.969 -16.189 -11.113 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C 0.034 3.966 4 H 0.096 0.904 5 C -0.149 4.149 6 C -0.134 4.134 7 H 0.124 0.876 8 C 0.303 3.697 9 O -0.420 6.420 10 N -0.371 5.371 11 C 0.003 3.997 12 C -0.139 4.139 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.027 3.973 27 C -0.169 4.169 28 C 0.312 3.688 29 O -0.429 6.429 30 N -0.371 5.371 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.239 0.761 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.035 0.965 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.036 0.964 50 H 0.129 0.871 51 H 0.126 0.874 52 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -13.425 -16.450 -10.840 23.840 hybrid contribution -0.830 1.158 0.501 1.510 sum -14.256 -15.293 -10.339 23.323 Atomic orbital electron populations 1.21811 0.95356 1.02281 1.01934 1.21919 0.96448 0.95398 1.03654 1.21084 0.95460 0.93694 0.86379 0.90412 1.21778 0.92802 0.95308 1.05044 1.21464 0.94301 0.99941 0.97663 0.87644 1.20301 0.88544 0.83221 0.77603 1.90701 1.69946 1.34951 1.46399 1.46117 1.11145 1.12339 1.67539 1.21488 0.79535 0.98272 1.00430 1.21964 0.97185 0.93810 1.00920 0.90869 1.21339 0.94827 0.98335 0.99262 1.22173 0.99041 0.95386 1.01503 1.20791 0.85383 1.01808 0.87685 1.44039 1.12917 1.08655 1.65752 1.19194 0.90953 1.04082 1.24103 0.91679 1.25053 0.96701 1.00382 0.97465 1.70047 1.10734 1.33928 1.39816 0.86243 0.79004 0.83776 0.77872 1.20222 1.21700 1.21579 1.20899 0.96849 0.88769 0.90781 1.21692 0.94291 1.05384 0.95545 1.20009 0.87893 0.77962 0.82982 1.90802 1.74382 1.51521 1.26218 1.45704 1.18474 1.47569 1.25306 0.92762 0.92274 0.92136 0.90965 0.90035 0.90032 0.88630 0.76114 0.91498 0.91925 0.92476 0.93465 0.93182 0.92756 0.96465 0.89570 0.93668 0.93149 0.96364 0.87100 0.87391 0.76531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 9.76 37.16 0.36 -0.28 16 2 C -0.14 -0.64 5.57 -26.73 -0.15 -0.79 16 3 C 0.14 0.81 3.07 -68.38 -0.21 0.60 16 4 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 5 C -0.11 -0.82 4.00 -26.59 -0.11 -0.92 16 6 C -0.11 -0.95 2.60 -91.55 -0.24 -1.18 16 7 H 0.11 0.72 8.13 -51.93 -0.42 0.30 16 8 C 0.52 6.03 7.14 -10.99 -0.08 5.95 16 9 O -0.54 -8.10 15.90 5.55 0.09 -8.01 16 10 N -0.72 -8.46 5.24 -60.29 -0.32 -8.78 16 11 C 0.13 1.70 5.07 -4.04 -0.02 1.68 16 12 C -0.12 -1.84 2.37 -90.50 -0.21 -2.05 16 13 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 14 C -0.10 -1.57 5.17 -26.69 -0.14 -1.71 16 15 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 16 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 17 N -0.59 -14.25 2.99 -172.31 -0.52 -14.76 16 18 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 19 H 0.07 1.70 7.88 -52.49 -0.41 1.28 16 20 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -25.90 11.19 55.49 0.62 -25.28 16 22 Si 0.90 21.47 29.59 -169.99 -5.03 16.45 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.15 2.99 5.60 -3.71 -0.02 2.97 16 27 C -0.13 -1.23 5.19 -28.10 -0.15 -1.38 16 28 C 0.52 5.80 7.71 -11.87 -0.09 5.71 16 29 O -0.55 -8.61 17.78 5.56 0.10 -8.51 16 30 N -0.72 -5.67 5.12 -54.85 -0.28 -5.95 16 31 H 0.05 0.23 6.67 -51.93 -0.35 -0.11 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 37 H 0.10 0.70 7.89 -51.93 -0.41 0.29 16 38 H 0.40 4.30 7.39 -40.82 -0.30 4.00 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.05 0.93 7.14 -51.93 -0.37 0.56 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.11 1.05 7.92 -51.93 -0.41 0.64 16 51 H 0.11 1.07 8.09 -51.93 -0.42 0.65 16 52 H 0.40 2.92 7.04 -40.82 -0.29 2.63 16 LS Contribution 402.87 15.07 6.07 6.07 Total: -1.00 -33.29 402.87 -9.90 -43.19 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -9.17 Total: 2.78 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -1.46 Total: 2.82 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.49 Total: -54.77 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.19 Total: -16.52 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.29 -9.90 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544617362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.340 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds