Wall clock time and date at job start Tue Mar 31 2020 20:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47215 * 2 1 4 4 H 1.09005 * 109.29798 * 305.41981 * 3 2 1 5 5 C 1.52914 * 109.30245 * 186.03798 * 3 2 1 6 6 C 1.53351 * 108.67609 * 188.93223 * 5 3 2 7 7 H 1.08999 * 109.67668 * 307.80005 * 6 5 3 8 8 C 1.50697 * 109.70593 * 187.28080 * 6 5 3 9 9 O 1.21286 * 120.00020 * 1.01567 * 8 6 5 10 10 N 1.34771 * 119.99946 * 181.01724 * 8 6 5 11 11 C 1.46499 * 120.00174 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.47502 * 179.97438 * 11 10 8 13 13 H 1.08992 * 109.50148 * 305.00756 * 12 11 10 14 14 C 1.53043 * 109.49985 * 184.93726 * 12 11 10 15 15 C 1.53035 * 109.53853 * 178.68584 * 14 12 11 16 16 C 1.53198 * 109.31406 * 61.36405 * 15 14 12 17 17 N 1.46923 * 108.77490 * 305.37043 * 16 15 14 18 18 C 1.36936 * 120.62825 * 233.60567 * 17 16 15 19 19 H 1.07995 * 120.00160 * 151.84053 * 18 17 16 20 20 C 1.38821 * 119.99947 * 331.84774 * 18 17 16 21 21 N 1.31616 * 119.99516 * 343.05789 * 20 18 17 22 22 Si 1.86798 * 119.99912 * 163.06599 * 20 18 17 23 23 H 1.48492 * 109.47428 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47208 * 119.99980 * 22 20 18 25 25 H 1.48500 * 109.47022 * 239.99552 * 22 20 18 26 26 C 1.46929 * 118.76999 * 53.58308 * 17 16 15 27 27 C 1.53072 * 108.42232 * 67.53194 * 6 5 3 28 28 C 1.50184 * 109.88881 * 311.09976 * 27 6 5 29 29 O 1.21280 * 118.24251 * 197.60215 * 28 27 6 30 30 N 1.33353 * 123.50957 * 17.58634 * 28 27 6 31 31 H 1.08997 * 109.47282 * 300.00073 * 1 2 3 32 32 H 1.08993 * 109.47280 * 60.00139 * 1 2 3 33 33 H 1.08995 * 109.46845 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47721 * 119.99885 * 2 1 3 35 35 H 1.09000 * 109.47358 * 240.00454 * 2 1 3 36 36 H 1.09001 * 109.60391 * 308.68775 * 5 3 2 37 37 H 1.09006 * 109.60475 * 69.17959 * 5 3 2 38 38 H 0.96996 * 120.00252 * 0.02562 * 10 8 6 39 39 H 1.09004 * 109.47503 * 300.00644 * 11 10 8 40 40 H 1.09004 * 109.46951 * 60.00095 * 11 10 8 41 41 H 1.09005 * 109.45938 * 298.71040 * 14 12 11 42 42 H 1.08996 * 109.45667 * 58.68186 * 14 12 11 43 43 H 1.08996 * 109.49995 * 181.31270 * 15 14 12 44 44 H 1.09006 * 109.49934 * 301.41654 * 15 14 12 45 45 H 1.09003 * 109.58241 * 65.14870 * 16 15 14 46 46 H 1.08995 * 109.58976 * 185.43056 * 16 15 14 47 47 H 0.97003 * 119.99270 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.61829 * 186.64281 * 26 17 16 49 49 H 1.09000 * 109.56000 * 66.21143 * 26 17 16 50 50 H 1.09000 * 109.40385 * 190.97613 * 27 6 5 51 51 H 1.08996 * 109.33418 * 71.18061 * 27 6 5 52 52 H 0.96995 * 117.94499 * 177.79720 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5979 1.9809 -0.8384 5 6 3.5616 1.4406 -0.1518 6 6 4.0793 2.8664 0.0737 7 1 3.5354 3.5600 -0.5675 8 6 5.5509 2.9289 -0.2447 9 8 6.1298 1.9367 -0.6340 10 7 6.2238 4.0872 -0.0968 11 6 7.6545 4.1479 -0.4058 12 6 8.1707 5.5663 -0.1556 13 1 7.5727 6.2770 -0.7258 14 6 9.6338 5.6623 -0.5940 15 6 10.1414 7.0892 -0.3746 16 6 10.0599 7.4324 1.1162 17 7 8.6847 7.2030 1.5798 18 6 7.9919 8.1922 2.2252 19 1 6.9141 8.2244 2.1646 20 6 8.6749 9.1538 2.9572 21 7 9.9246 8.9448 3.3135 22 14 7.8204 10.7442 3.4367 23 1 6.4290 10.7343 2.9183 24 1 7.7969 10.8668 4.9165 25 1 8.5563 11.8960 2.8562 26 6 8.0662 5.8924 1.3376 27 6 3.8535 3.2365 1.5417 28 6 2.4418 2.9126 1.9390 29 8 1.9959 3.4265 2.9429 30 7 1.6524 2.0905 1.2467 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 4.0020 0.7706 0.5866 37 1 3.8286 1.1091 -1.1553 38 1 5.7609 4.8806 0.2149 39 1 8.1939 3.4469 0.2313 40 1 7.8119 3.8836 -1.4515 41 1 10.2352 4.9685 -0.0065 42 1 9.7137 5.4072 -1.6507 43 1 11.1762 7.1627 -0.7087 44 1 9.5248 7.7861 -0.9425 45 1 10.7450 6.7954 1.6757 46 1 10.3286 8.4780 1.2658 47 1 10.4020 9.6169 3.8247 48 1 7.0172 5.9227 1.6325 49 1 8.5885 5.1300 1.9155 50 1 4.0322 4.3031 1.6778 51 1 4.5443 2.6709 2.1668 52 1 0.7646 1.9128 1.5945 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544617362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:00 Heat of formation + Delta-G solvation = -103.983314 kcal Electronic energy + Delta-G solvation = -30061.169800 eV Core-core repulsion = 26058.728627 eV Total energy + Delta-G solvation = -4002.441173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.84061 -40.54536 -39.34592 -38.06653 -36.23733 -35.06660 -34.52599 -33.03968 -32.28926 -31.83505 -29.98783 -27.48087 -27.17552 -25.98557 -24.13076 -23.75606 -22.74445 -22.35711 -21.33996 -20.54745 -20.22755 -18.70851 -18.44191 -17.89660 -17.40404 -16.87797 -16.79692 -16.48809 -16.23802 -15.78374 -15.56356 -15.39088 -15.07518 -14.82675 -14.74801 -14.58039 -14.47698 -14.33865 -14.00004 -13.81777 -13.71292 -13.45102 -13.00438 -12.96543 -12.89497 -12.52316 -12.34693 -12.31867 -12.23163 -12.08530 -11.94688 -11.85651 -11.80477 -11.75248 -11.56428 -11.40890 -11.23514 -11.07826 -10.58716 -10.53494 -10.10707 -10.03504 -8.66642 -7.86534 -5.32076 1.45997 1.48383 1.53391 1.58160 1.61031 2.19574 2.25802 2.51332 3.28489 3.38650 3.53633 3.60417 3.63192 3.71562 4.00939 4.02255 4.04356 4.09088 4.11037 4.20966 4.32278 4.42790 4.50565 4.56134 4.60251 4.64294 4.67984 4.76040 4.79314 4.87607 4.91018 4.94023 4.98773 5.02702 5.12455 5.17320 5.18103 5.25248 5.29135 5.35802 5.41323 5.44107 5.51037 5.58948 5.68320 5.79928 5.81081 6.29494 6.39848 6.55020 7.15563 7.15968 7.22426 7.87594 8.39016 9.19729 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013688 B = 0.002640 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.125759 B =10602.809079 C =12341.390776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.132 4.132 3 C 0.141 3.859 4 H 0.100 0.900 5 C -0.109 4.109 6 C -0.100 4.100 7 H 0.131 0.869 8 C 0.521 3.479 9 O -0.574 6.574 10 N -0.719 5.719 11 C 0.137 3.863 12 C -0.100 4.100 13 H 0.078 0.922 14 C -0.097 4.097 15 C -0.130 4.130 16 C 0.173 3.827 17 N -0.610 5.610 18 C -0.257 4.257 19 H 0.071 0.929 20 C -0.054 4.054 21 N -0.936 5.936 22 Si 0.964 3.036 23 H -0.264 1.264 24 H -0.296 1.296 25 H -0.291 1.291 26 C 0.152 3.848 27 C -0.126 4.126 28 C 0.524 3.476 29 O -0.605 6.605 30 N -0.704 5.704 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.410 0.590 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.054 0.946 45 H -0.009 1.009 46 H 0.050 0.950 47 H 0.248 0.752 48 H 0.057 0.943 49 H 0.004 0.996 50 H 0.111 0.889 51 H 0.101 0.899 52 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.757 -17.097 -13.621 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.170 4.170 3 C 0.037 3.963 4 H 0.118 0.882 5 C -0.147 4.147 6 C -0.122 4.122 7 H 0.149 0.851 8 C 0.308 3.692 9 O -0.454 6.454 10 N -0.370 5.370 11 C 0.013 3.987 12 C -0.121 4.121 13 H 0.096 0.904 14 C -0.135 4.135 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.333 5.333 18 C -0.387 4.387 19 H 0.088 0.912 20 C -0.249 4.249 21 N -0.583 5.583 22 Si 0.792 3.208 23 H -0.188 1.188 24 H -0.223 1.223 25 H -0.218 1.218 26 C 0.026 3.974 27 C -0.166 4.166 28 C 0.312 3.688 29 O -0.487 6.487 30 N -0.356 5.356 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.247 0.753 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.009 0.991 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.022 0.978 50 H 0.129 0.871 51 H 0.119 0.881 52 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -15.250 -17.398 -13.400 26.736 hybrid contribution -0.268 1.345 1.275 1.873 sum -15.519 -16.053 -12.125 25.408 Atomic orbital electron populations 1.21817 0.94790 1.02637 1.02140 1.21894 0.96859 0.94378 1.03896 1.21258 0.94593 0.94648 0.85774 0.88182 1.21776 0.93623 0.94221 1.05069 1.21439 0.92274 1.01376 0.97071 0.85139 1.20737 0.89534 0.82399 0.76575 1.90693 1.70841 1.35935 1.47900 1.46095 1.10570 1.12888 1.67414 1.21263 0.80343 0.96192 1.00896 1.21718 0.97545 0.95280 0.97538 0.90400 1.21339 0.94528 0.96294 1.01366 1.21998 1.00498 0.97131 0.97288 1.20624 0.84729 0.99091 0.90873 1.44316 1.13099 1.10032 1.65826 1.19558 0.91434 1.04566 1.23184 0.91177 1.25799 0.97422 1.03392 0.98264 1.70202 1.12211 1.34672 1.41188 0.85260 0.78565 0.80048 0.76913 1.18792 1.22340 1.21785 1.21046 0.96582 0.86251 0.93524 1.21629 0.93343 1.05349 0.96257 1.20185 0.88359 0.77825 0.82414 1.90779 1.75436 1.53891 1.28589 1.45711 1.18215 1.46171 1.25453 0.93131 0.91484 0.91789 0.91851 0.88741 0.91257 0.87916 0.75342 0.92589 0.90648 0.92774 0.90021 0.91363 0.92768 0.99081 0.93157 0.94264 0.92455 0.97757 0.87067 0.88083 0.76041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.76 71.98 0.70 -0.22 16 2 C -0.13 -0.92 5.57 30.59 0.17 -0.75 16 3 C 0.14 1.27 3.07 45.10 0.14 1.41 16 4 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 5 C -0.11 -1.35 4.00 30.68 0.12 -1.22 16 6 C -0.10 -1.46 2.60 -11.40 -0.03 -1.49 16 7 H 0.13 1.31 8.13 -2.39 -0.02 1.29 16 8 C 0.52 11.04 7.14 87.66 0.63 11.67 16 9 O -0.57 -16.10 15.90 -3.05 -0.05 -16.15 16 10 N -0.72 -15.33 5.24 -463.06 -2.43 -17.75 16 11 C 0.14 3.37 5.07 86.38 0.44 3.81 16 12 C -0.10 -2.92 2.37 -10.71 -0.03 -2.94 16 13 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 14 C -0.10 -2.84 5.17 30.62 0.16 -2.68 16 15 C -0.13 -4.61 6.08 30.67 0.19 -4.42 16 16 C 0.17 8.20 5.30 86.37 0.46 8.66 16 17 N -0.61 -29.64 2.99 -699.07 -2.09 -31.73 16 18 C -0.26 -13.80 9.58 84.04 0.81 -13.00 16 19 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 20 C -0.05 -2.98 4.92 84.86 0.42 -2.56 16 21 N -0.94 -55.66 11.19 21.65 0.24 -55.42 16 22 Si 0.96 44.78 29.59 68.60 2.03 46.81 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 26 C 0.15 5.81 5.60 86.36 0.48 6.30 16 27 C -0.13 -2.27 5.19 29.71 0.15 -2.12 16 28 C 0.52 11.20 7.71 87.72 0.68 11.88 16 29 O -0.60 -19.05 17.78 -3.03 -0.05 -19.11 16 30 N -0.70 -9.98 5.12 -446.64 -2.29 -12.27 16 31 H 0.05 0.34 6.67 -2.39 -0.02 0.32 16 32 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 1.05 8.11 -2.39 -0.02 1.04 16 37 H 0.10 1.20 7.89 -2.38 -0.02 1.18 16 38 H 0.41 7.82 7.39 -92.71 -0.68 7.14 16 39 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 45 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 46 H 0.05 2.74 6.06 -2.39 -0.01 2.72 16 47 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 48 H 0.06 2.08 7.14 -2.39 -0.02 2.06 16 49 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 50 H 0.11 2.01 7.92 -2.39 -0.02 1.99 16 51 H 0.10 1.98 8.09 -2.39 -0.02 1.96 16 52 H 0.40 5.33 7.04 -92.71 -0.65 4.67 16 Total: -1.00 -74.19 402.87 0.42 -73.77 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.43 Total: 19.54 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 5.48 Total: 12.31 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -6.56 Total: -117.17 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.10 Total: -35.25 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -74.19 0.42 -73.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544617362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.214 kcal (2) G-P(sol) polarization free energy of solvation -74.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds