Wall clock time and date at job start Tue Mar 31 2020 20:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46849 * 2 1 4 4 H 1.08999 * 109.99614 * 307.48035 * 3 2 1 5 5 C 1.54329 * 109.77903 * 68.64509 * 3 2 1 6 6 C 1.55161 * 103.02080 * 97.49976 * 5 3 2 7 7 H 1.09006 * 111.00084 * 277.22980 * 6 5 3 8 8 C 1.53000 * 111.04037 * 153.39272 * 6 5 3 9 9 C 1.54910 * 101.58060 * 35.30034 * 6 5 3 10 10 N 1.47017 * 109.87827 * 186.38784 * 3 2 1 11 11 C 1.34776 * 125.65080 * 59.55911 * 10 3 2 12 12 O 1.21345 * 120.00169 * 354.42988 * 11 10 3 13 13 C 1.49460 * 119.99920 * 174.15294 * 11 10 3 14 14 O 1.21345 * 119.99906 * 0.02562 * 13 11 10 15 15 N 1.34776 * 119.99920 * 180.02562 * 13 11 10 16 16 C 1.46494 * 119.99989 * 180.02562 * 15 13 11 17 17 C 1.53034 * 109.46025 * 275.06645 * 16 15 13 18 18 C 1.53198 * 109.31501 * 178.61467 * 17 16 15 19 19 N 1.46931 * 108.77272 * 54.63473 * 18 17 16 20 20 C 1.36933 * 120.62391 * 126.37042 * 19 18 17 21 21 H 1.08007 * 119.99726 * 213.68824 * 20 19 18 22 22 C 1.38809 * 120.00498 * 33.69521 * 20 19 18 23 23 N 1.31621 * 119.99782 * 7.13391 * 22 20 19 24 24 Si 1.86796 * 120.00176 * 187.13362 * 22 20 19 25 25 H 1.48500 * 109.47081 * 60.00250 * 24 22 20 26 26 H 1.48505 * 109.47118 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47237 * 299.99956 * 24 22 20 28 28 C 1.46922 * 118.73947 * 306.39172 * 19 18 17 29 29 C 1.53043 * 109.46084 * 154.99979 * 16 15 13 30 30 H 1.09001 * 109.47439 * 304.53025 * 1 2 3 31 31 H 1.09001 * 109.47380 * 64.53028 * 1 2 3 32 32 H 1.08998 * 109.46839 * 184.53017 * 1 2 3 33 33 H 1.08998 * 109.47211 * 239.99965 * 2 1 3 34 34 H 1.08997 * 109.47314 * 119.99746 * 2 1 3 35 35 H 1.08994 * 110.85377 * 339.03140 * 5 3 2 36 36 H 1.09005 * 110.66593 * 215.87699 * 5 3 2 37 37 H 1.09000 * 109.46815 * 306.32957 * 8 6 5 38 38 H 1.09000 * 109.46734 * 66.33216 * 8 6 5 39 39 H 1.08992 * 109.46771 * 186.32685 * 8 6 5 40 40 H 1.09005 * 110.36837 * 204.15413 * 9 6 5 41 41 H 1.09003 * 110.36505 * 81.83326 * 9 6 5 42 42 H 0.97010 * 119.99848 * 0.02562 * 15 13 11 43 43 H 1.08999 * 109.46194 * 35.02729 * 16 15 13 44 44 H 1.09004 * 109.50191 * 298.56370 * 17 16 15 45 45 H 1.08996 * 109.49964 * 58.66485 * 17 16 15 46 46 H 1.09006 * 109.58598 * 294.84996 * 18 17 16 47 47 H 1.09000 * 109.58668 * 174.42457 * 18 17 16 48 48 H 0.96999 * 120.00026 * 179.97438 * 23 22 20 49 49 H 1.08991 * 109.58782 * 293.82259 * 28 19 18 50 50 H 1.09002 * 109.70329 * 173.46526 * 28 19 18 51 51 H 1.08998 * 109.49949 * 301.33787 * 29 16 15 52 52 H 1.09005 * 109.49567 * 61.40007 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5766 2.0017 -0.8128 5 6 1.7154 2.1112 1.3525 6 6 3.0428 1.9644 2.1425 7 1 3.1155 0.9798 2.6047 8 6 3.1838 3.0705 3.1901 9 6 4.0944 2.1283 1.0169 10 7 3.5020 1.4559 -0.1538 11 6 4.1870 0.9436 -1.1953 12 8 3.6026 0.3263 -2.0613 13 6 5.6657 1.1411 -1.2870 14 8 6.2495 1.7624 -0.4234 15 7 6.3506 0.6293 -2.3288 16 6 7.8000 0.8224 -2.4183 17 6 8.0948 2.1728 -3.0750 18 6 9.6106 2.3867 -3.1356 19 7 10.2233 1.2379 -3.8166 20 6 11.0496 1.4243 -4.8925 21 1 11.0662 0.6990 -5.6927 22 6 11.8659 2.5452 -4.9549 23 7 11.9517 3.3552 -3.9210 24 14 12.8428 2.9042 -6.5061 25 1 11.9108 3.0751 -7.6495 26 1 13.6292 4.1499 -6.3187 27 1 13.7644 1.7733 -6.7835 28 6 9.9323 -0.1144 -3.3215 29 6 8.4130 -0.3001 -3.2588 30 1 -0.3634 0.5825 0.8466 31 1 -0.3634 0.4419 -0.9278 32 1 -0.3633 -1.0245 0.0812 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.9050 1.5877 1.8596 36 1 1.4649 3.1626 1.2116 37 1 3.0648 4.0422 2.7107 38 1 2.4172 2.9463 3.9550 39 1 4.1698 3.0109 3.6508 40 1 5.0301 1.6453 1.2985 41 1 4.2607 3.1843 0.8039 42 1 5.8838 0.1330 -3.0193 43 1 8.2314 0.8036 -1.4175 44 1 7.6853 2.1834 -4.0852 45 1 7.6382 2.9700 -2.4886 46 1 10.0090 2.4670 -2.1242 47 1 9.8290 3.2994 -3.6901 48 1 12.5224 4.1383 -3.9644 49 1 10.3569 -0.2380 -2.3253 50 1 10.3633 -0.8536 -3.9967 51 1 8.1827 -1.2631 -2.8032 52 1 8.0000 -0.2667 -4.2671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588123624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:22 Heat of formation + Delta-G solvation = -57.907154 kcal Electronic energy + Delta-G solvation = -30311.191446 eV Core-core repulsion = 26310.748286 eV Total energy + Delta-G solvation = -4000.443161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.99123 -39.40214 -37.92856 -37.29589 -34.58925 -34.03669 -33.00966 -32.11613 -30.10050 -29.54878 -28.84747 -26.76492 -25.89863 -24.72119 -23.38821 -22.25942 -22.01531 -21.18741 -20.37186 -19.75334 -19.12024 -17.77801 -16.97386 -16.76998 -16.49454 -15.69315 -15.63577 -14.92757 -14.62117 -14.26360 -14.20256 -13.99743 -13.88452 -13.75635 -13.51508 -13.28466 -13.23895 -13.00661 -12.87817 -12.57947 -12.41765 -12.28729 -12.01066 -11.96298 -11.58729 -11.57593 -11.48304 -11.04475 -10.97675 -10.94363 -10.86657 -10.76403 -10.67175 -10.40610 -10.25776 -10.09884 -9.82561 -9.72829 -9.30527 -8.97787 -8.77897 -8.45558 -6.60530 -5.78888 -3.30135 1.48308 2.26913 3.26816 3.37989 3.43333 3.44076 3.49392 4.12202 4.20042 4.43261 4.47919 4.54377 4.62408 4.86481 4.96142 5.04070 5.12258 5.22283 5.25924 5.26586 5.37273 5.41718 5.43078 5.43615 5.51528 5.59586 5.64445 5.70528 5.76293 5.78422 5.79265 5.83874 5.94729 5.98115 6.05123 6.18564 6.21799 6.26753 6.39932 6.55962 6.64962 6.74840 6.79431 6.92752 7.06263 7.35192 7.39515 7.70641 7.76427 7.78602 8.13111 8.49059 9.22178 9.82150 10.41469 11.29242 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022551 B = 0.002295 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.344487 B =12198.181505 C =12853.053908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.137 3.863 4 H 0.078 0.922 5 C -0.126 4.126 6 C -0.109 4.109 7 H 0.084 0.916 8 C -0.140 4.140 9 C 0.105 3.895 10 N -0.591 5.591 11 C 0.522 3.478 12 O -0.523 6.523 13 C 0.504 3.496 14 O -0.518 6.518 15 N -0.691 5.691 16 C 0.149 3.851 17 C -0.148 4.148 18 C 0.176 3.824 19 N -0.593 5.593 20 C -0.256 4.256 21 H 0.063 0.937 22 C 0.007 3.993 23 N -0.904 5.904 24 Si 0.906 3.094 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.149 3.851 29 C -0.140 4.140 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.407 0.593 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.021 0.979 47 H 0.091 0.909 48 H 0.255 0.745 49 H 0.021 0.979 50 H 0.060 0.940 51 H 0.057 0.943 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.293 -3.994 12.588 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.034 3.966 4 H 0.096 0.904 5 C -0.164 4.164 6 C -0.128 4.128 7 H 0.102 0.898 8 C -0.198 4.198 9 C -0.017 4.017 10 N -0.325 5.325 11 C 0.305 3.695 12 O -0.399 6.399 13 C 0.284 3.716 14 O -0.394 6.394 15 N -0.342 5.342 16 C 0.047 3.953 17 C -0.188 4.188 18 C 0.050 3.950 19 N -0.315 5.315 20 C -0.386 4.386 21 H 0.081 0.919 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.736 3.264 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.208 1.208 28 C 0.022 3.978 29 C -0.180 4.180 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.242 0.758 43 H 0.104 0.896 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.039 0.961 47 H 0.109 0.891 48 H 0.066 0.934 49 H 0.039 0.961 50 H 0.078 0.922 51 H 0.076 0.924 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.983 -3.748 12.669 25.647 hybrid contribution 0.253 0.067 -1.122 1.152 sum -21.730 -3.681 11.548 24.881 Atomic orbital electron populations 1.21762 0.95054 1.01912 1.01875 1.21917 0.96211 0.96029 1.03562 1.21742 0.79562 0.97130 0.98186 0.90374 1.22862 0.98035 1.01387 0.94138 1.22433 0.94475 1.00473 0.95386 0.89756 1.21684 1.02322 0.97719 0.98088 1.22682 0.97284 0.98412 0.83322 1.48317 1.07325 1.56333 1.20483 1.20088 0.88335 0.79703 0.81339 1.90721 1.70457 1.39651 1.39047 1.19920 0.87427 0.81008 0.83241 1.90735 1.70030 1.39603 1.39031 1.46194 1.09859 1.54002 1.24189 1.21224 0.76485 0.96923 1.00703 1.22617 1.01914 0.94816 0.99498 1.20777 0.85278 0.92702 0.96287 1.44030 1.53466 0.99520 1.34516 1.19103 1.15094 1.07884 0.96531 0.91905 1.25257 0.97402 0.99406 0.97173 1.69941 1.40678 1.15449 1.28711 0.86329 0.79945 0.77403 0.82772 1.20953 1.21585 1.20805 1.20849 0.90369 0.89189 0.97382 1.22370 1.00021 0.96139 0.99471 0.92539 0.92552 0.92450 0.89912 0.91835 0.89530 0.90327 0.92192 0.92173 0.91926 0.88497 0.90633 0.75805 0.89622 0.92494 0.92845 0.96054 0.89078 0.93449 0.96122 0.92191 0.92449 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.81 37.16 0.36 -0.64 16 2 C -0.14 -1.25 5.43 -26.73 -0.15 -1.39 16 3 C 0.14 1.26 2.96 -66.95 -0.20 1.07 16 4 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.13 -0.83 5.73 -24.89 -0.14 -0.97 16 6 C -0.11 -0.78 3.64 -88.47 -0.32 -1.11 16 7 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 8 C -0.14 -0.83 9.30 37.16 0.35 -0.49 16 9 C 0.11 1.08 5.34 -2.53 -0.01 1.07 16 10 N -0.59 -6.93 3.08 -163.51 -0.50 -7.44 16 11 C 0.52 7.44 7.73 -11.58 -0.09 7.35 16 12 O -0.52 -8.13 15.10 5.50 0.08 -8.05 16 13 C 0.50 7.87 7.82 -11.58 -0.09 7.78 16 14 O -0.52 -8.96 13.59 5.50 0.07 -8.89 16 15 N -0.69 -10.57 5.07 -54.20 -0.27 -10.85 16 16 C 0.15 2.61 2.41 -67.89 -0.16 2.44 16 17 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 18 C 0.18 4.24 5.23 -3.70 -0.02 4.22 16 19 N -0.59 -14.73 2.98 -172.31 -0.51 -15.25 16 20 C -0.26 -6.97 9.57 -15.06 -0.14 -7.11 16 21 H 0.06 1.67 7.84 -52.48 -0.41 1.26 16 22 C 0.01 0.18 5.11 -17.43 -0.09 0.09 16 23 N -0.90 -26.19 11.03 55.49 0.61 -25.58 16 24 Si 0.91 21.61 29.56 -169.99 -5.02 16.59 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.15 3.06 6.51 -3.71 -0.02 3.03 16 29 C -0.14 -2.36 5.55 -26.61 -0.15 -2.50 16 30 H 0.06 0.30 6.53 -51.93 -0.34 -0.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.96 6.36 -51.93 -0.33 0.63 16 34 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 35 H 0.09 0.45 6.36 -51.93 -0.33 0.12 16 36 H 0.08 0.47 8.01 -51.93 -0.42 0.05 16 37 H 0.06 0.35 8.11 -51.93 -0.42 -0.07 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 1.15 6.51 -51.93 -0.34 0.81 16 41 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 42 H 0.41 5.64 8.07 -40.82 -0.33 5.31 16 43 H 0.09 1.62 7.58 -51.93 -0.39 1.22 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 48 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.06 1.19 7.94 -51.93 -0.41 0.77 16 51 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 401.16 15.07 6.05 6.05 Total: -1.00 -30.72 401.16 -9.62 -40.35 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -9.09 Total: 3.31 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -1.03 Total: 9.75 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.68 Total: -59.10 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.16 Total: -16.94 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.72 -9.62 -40.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.562 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds