Wall clock time and date at job start Tue Mar 31 2020 20:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46849 * 2 1 4 4 H 1.08999 * 109.99614 * 307.48035 * 3 2 1 5 5 C 1.54329 * 109.77903 * 68.64509 * 3 2 1 6 6 C 1.55161 * 103.02080 * 97.49976 * 5 3 2 7 7 H 1.09006 * 111.00084 * 277.22980 * 6 5 3 8 8 C 1.53000 * 111.04037 * 153.39272 * 6 5 3 9 9 C 1.54910 * 101.58060 * 35.30034 * 6 5 3 10 10 N 1.47017 * 109.87827 * 186.38784 * 3 2 1 11 11 C 1.34776 * 125.65080 * 59.55911 * 10 3 2 12 12 O 1.21345 * 120.00169 * 354.42988 * 11 10 3 13 13 C 1.49460 * 119.99920 * 174.15294 * 11 10 3 14 14 O 1.21345 * 119.99906 * 0.02562 * 13 11 10 15 15 N 1.34776 * 119.99920 * 180.02562 * 13 11 10 16 16 C 1.46494 * 119.99989 * 180.02562 * 15 13 11 17 17 C 1.53034 * 109.46025 * 275.06645 * 16 15 13 18 18 C 1.53198 * 109.31501 * 178.61467 * 17 16 15 19 19 N 1.46931 * 108.77272 * 54.63473 * 18 17 16 20 20 C 1.36933 * 120.62391 * 126.37042 * 19 18 17 21 21 H 1.08007 * 119.99726 * 213.68824 * 20 19 18 22 22 C 1.38809 * 120.00498 * 33.69521 * 20 19 18 23 23 N 1.31621 * 119.99782 * 7.13391 * 22 20 19 24 24 Si 1.86796 * 120.00176 * 187.13362 * 22 20 19 25 25 H 1.48500 * 109.47081 * 60.00250 * 24 22 20 26 26 H 1.48505 * 109.47118 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47237 * 299.99956 * 24 22 20 28 28 C 1.46922 * 118.73947 * 306.39172 * 19 18 17 29 29 C 1.53043 * 109.46084 * 154.99979 * 16 15 13 30 30 H 1.09001 * 109.47439 * 304.53025 * 1 2 3 31 31 H 1.09001 * 109.47380 * 64.53028 * 1 2 3 32 32 H 1.08998 * 109.46839 * 184.53017 * 1 2 3 33 33 H 1.08998 * 109.47211 * 239.99965 * 2 1 3 34 34 H 1.08997 * 109.47314 * 119.99746 * 2 1 3 35 35 H 1.08994 * 110.85377 * 339.03140 * 5 3 2 36 36 H 1.09005 * 110.66593 * 215.87699 * 5 3 2 37 37 H 1.09000 * 109.46815 * 306.32957 * 8 6 5 38 38 H 1.09000 * 109.46734 * 66.33216 * 8 6 5 39 39 H 1.08992 * 109.46771 * 186.32685 * 8 6 5 40 40 H 1.09005 * 110.36837 * 204.15413 * 9 6 5 41 41 H 1.09003 * 110.36505 * 81.83326 * 9 6 5 42 42 H 0.97010 * 119.99848 * 0.02562 * 15 13 11 43 43 H 1.08999 * 109.46194 * 35.02729 * 16 15 13 44 44 H 1.09004 * 109.50191 * 298.56370 * 17 16 15 45 45 H 1.08996 * 109.49964 * 58.66485 * 17 16 15 46 46 H 1.09006 * 109.58598 * 294.84996 * 18 17 16 47 47 H 1.09000 * 109.58668 * 174.42457 * 18 17 16 48 48 H 0.96999 * 120.00026 * 179.97438 * 23 22 20 49 49 H 1.08991 * 109.58782 * 293.82259 * 28 19 18 50 50 H 1.09002 * 109.70329 * 173.46526 * 28 19 18 51 51 H 1.08998 * 109.49949 * 301.33787 * 29 16 15 52 52 H 1.09005 * 109.49567 * 61.40007 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5766 2.0017 -0.8128 5 6 1.7154 2.1112 1.3525 6 6 3.0428 1.9644 2.1425 7 1 3.1155 0.9798 2.6047 8 6 3.1838 3.0705 3.1901 9 6 4.0944 2.1283 1.0169 10 7 3.5020 1.4559 -0.1538 11 6 4.1870 0.9436 -1.1953 12 8 3.6026 0.3263 -2.0613 13 6 5.6657 1.1411 -1.2870 14 8 6.2495 1.7624 -0.4234 15 7 6.3506 0.6293 -2.3288 16 6 7.8000 0.8224 -2.4183 17 6 8.0948 2.1728 -3.0750 18 6 9.6106 2.3867 -3.1356 19 7 10.2233 1.2379 -3.8166 20 6 11.0496 1.4243 -4.8925 21 1 11.0662 0.6990 -5.6927 22 6 11.8659 2.5452 -4.9549 23 7 11.9517 3.3552 -3.9210 24 14 12.8428 2.9042 -6.5061 25 1 11.9108 3.0751 -7.6495 26 1 13.6292 4.1499 -6.3187 27 1 13.7644 1.7733 -6.7835 28 6 9.9323 -0.1144 -3.3215 29 6 8.4130 -0.3001 -3.2588 30 1 -0.3634 0.5825 0.8466 31 1 -0.3634 0.4419 -0.9278 32 1 -0.3633 -1.0245 0.0812 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.9050 1.5877 1.8596 36 1 1.4649 3.1626 1.2116 37 1 3.0648 4.0422 2.7107 38 1 2.4172 2.9463 3.9550 39 1 4.1698 3.0109 3.6508 40 1 5.0301 1.6453 1.2985 41 1 4.2607 3.1843 0.8039 42 1 5.8838 0.1330 -3.0193 43 1 8.2314 0.8036 -1.4175 44 1 7.6853 2.1834 -4.0852 45 1 7.6382 2.9700 -2.4886 46 1 10.0090 2.4670 -2.1242 47 1 9.8290 3.2994 -3.6901 48 1 12.5224 4.1383 -3.9644 49 1 10.3569 -0.2380 -2.3253 50 1 10.3633 -0.8536 -3.9967 51 1 8.1827 -1.2631 -2.8032 52 1 8.0000 -0.2667 -4.2671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588123624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:21 Heat of formation + Delta-G solvation = -76.575875 kcal Electronic energy + Delta-G solvation = -30312.000983 eV Core-core repulsion = 26310.748286 eV Total energy + Delta-G solvation = -4001.252697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.06549 -40.54966 -39.08555 -38.77232 -36.17798 -34.69267 -34.07799 -33.71248 -31.82415 -31.30113 -29.49703 -27.65547 -27.25119 -26.04902 -24.44601 -23.93166 -23.30924 -22.21233 -21.47030 -20.98254 -20.32946 -19.05597 -18.52047 -18.05770 -17.42594 -17.07977 -16.77445 -16.58571 -15.92430 -15.48894 -15.35814 -15.23781 -15.05238 -14.84230 -14.73839 -14.59188 -14.33779 -14.11028 -14.04082 -13.84155 -13.57086 -13.23598 -12.94717 -12.82268 -12.79151 -12.70097 -12.64279 -12.60684 -12.43744 -12.18895 -12.14669 -12.07175 -11.88773 -11.62185 -11.57688 -11.52552 -11.40594 -11.35298 -10.60032 -10.53942 -10.21161 -9.86794 -8.62780 -7.87465 -5.41998 0.29253 1.18125 1.47649 1.49688 1.56253 2.07149 2.39503 2.50402 3.21243 3.30706 3.47458 3.61834 3.66736 3.80792 3.85041 3.98804 4.00636 4.20745 4.26659 4.30685 4.38783 4.44277 4.56556 4.60777 4.64172 4.67484 4.71279 4.76732 4.81396 4.82727 4.96892 4.97678 4.99555 5.02043 5.06034 5.10547 5.13190 5.20248 5.28271 5.29923 5.30743 5.34150 5.45383 5.45757 5.50453 5.63917 5.70336 5.99954 6.20018 6.42119 6.63037 6.90820 7.15082 7.82686 8.37431 9.18792 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022551 B = 0.002295 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.344487 B =12198.181505 C =12853.053908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.128 3.872 4 H 0.074 0.926 5 C -0.116 4.116 6 C -0.099 4.099 7 H 0.088 0.912 8 C -0.138 4.138 9 C 0.100 3.900 10 N -0.586 5.586 11 C 0.521 3.479 12 O -0.540 6.540 13 C 0.503 3.497 14 O -0.537 6.537 15 N -0.683 5.683 16 C 0.161 3.839 17 C -0.133 4.133 18 C 0.186 3.814 19 N -0.611 5.611 20 C -0.265 4.265 21 H 0.069 0.931 22 C -0.049 4.049 23 N -0.938 5.938 24 Si 0.971 3.029 25 H -0.277 1.277 26 H -0.295 1.295 27 H -0.273 1.273 28 C 0.144 3.856 29 C -0.125 4.125 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.417 0.583 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.050 0.950 46 H -0.004 1.004 47 H 0.057 0.943 48 H 0.250 0.750 49 H 0.017 0.983 50 H 0.068 0.932 51 H 0.091 0.909 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.620 -4.971 13.121 28.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.026 3.974 4 H 0.092 0.908 5 C -0.153 4.153 6 C -0.118 4.118 7 H 0.107 0.893 8 C -0.195 4.195 9 C -0.022 4.022 10 N -0.319 5.319 11 C 0.304 3.696 12 O -0.418 6.418 13 C 0.283 3.717 14 O -0.415 6.415 15 N -0.335 5.335 16 C 0.057 3.943 17 C -0.173 4.173 18 C 0.059 3.941 19 N -0.334 5.334 20 C -0.395 4.395 21 H 0.087 0.913 22 C -0.245 4.245 23 N -0.583 5.583 24 Si 0.799 3.201 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.199 1.199 28 C 0.018 3.982 29 C -0.164 4.164 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.254 0.746 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.014 0.986 47 H 0.075 0.925 48 H 0.059 0.941 49 H 0.035 0.965 50 H 0.086 0.914 51 H 0.110 0.890 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.355 -4.755 13.218 28.115 hybrid contribution 0.961 0.362 -1.222 1.597 sum -23.393 -4.393 11.996 26.654 Atomic orbital electron populations 1.21737 0.93114 1.02645 1.02604 1.21853 0.97831 0.95346 1.02236 1.22022 0.77738 0.97759 0.99837 0.90767 1.22884 0.98135 1.02128 0.92165 1.22403 0.93526 1.01305 0.94567 0.89332 1.21677 1.02704 0.97142 0.97991 1.22783 0.97785 0.97653 0.84005 1.48473 1.08660 1.54941 1.19817 1.19756 0.87558 0.80275 0.82049 1.90715 1.70419 1.40778 1.39875 1.20267 0.88255 0.80354 0.82790 1.90734 1.70672 1.40366 1.39710 1.45956 1.08840 1.54107 1.24596 1.20889 0.77877 0.95716 0.99774 1.22357 0.98574 0.96561 0.99787 1.20469 0.87892 0.91643 0.94091 1.44274 1.53599 1.01183 1.34375 1.19478 1.14835 1.07827 0.97381 0.91290 1.26043 0.98797 0.99562 1.00092 1.70124 1.41620 1.15841 1.30717 0.85290 0.78519 0.76967 0.79314 1.20261 1.22169 1.19866 1.21020 0.93007 0.87076 0.97095 1.22186 0.96935 0.97306 1.00013 0.90478 0.92910 0.91981 0.92887 0.91491 0.87218 0.89168 0.92073 0.90357 0.92456 0.90345 0.91081 0.74627 0.90956 0.92422 0.93136 0.98631 0.92503 0.94058 0.96482 0.91373 0.89043 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.81 71.98 0.71 -0.90 16 2 C -0.13 -2.21 5.43 30.60 0.17 -2.05 16 3 C 0.13 2.17 2.96 45.35 0.13 2.30 16 4 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 5 C -0.12 -1.17 5.73 31.79 0.18 -0.99 16 6 C -0.10 -1.22 3.64 -9.40 -0.03 -1.25 16 7 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 8 C -0.14 -1.31 9.30 71.98 0.67 -0.64 16 9 C 0.10 2.00 5.34 86.86 0.46 2.46 16 10 N -0.59 -13.39 3.08 -789.59 -2.43 -15.82 16 11 C 0.52 14.71 7.73 87.27 0.67 15.39 16 12 O -0.54 -16.62 15.10 -3.23 -0.05 -16.67 16 13 C 0.50 15.62 7.82 87.27 0.68 16.30 16 14 O -0.54 -18.83 13.59 -3.23 -0.04 -18.87 16 15 N -0.68 -20.33 5.07 -443.75 -2.25 -22.58 16 16 C 0.16 5.54 2.41 45.02 0.11 5.65 16 17 C -0.13 -5.36 5.65 30.67 0.17 -5.18 16 18 C 0.19 9.30 5.23 86.36 0.45 9.75 16 19 N -0.61 -30.76 2.98 -699.08 -2.08 -32.85 16 20 C -0.26 -14.51 9.57 84.03 0.80 -13.71 16 21 H 0.07 3.62 7.84 -2.91 -0.02 3.60 16 22 C -0.05 -2.78 5.11 84.86 0.43 -2.34 16 23 N -0.94 -56.14 11.03 21.65 0.24 -55.90 16 24 Si 0.97 44.93 29.56 68.60 2.03 46.96 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 26 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 28 C 0.14 5.80 6.51 86.36 0.56 6.36 16 29 C -0.12 -3.98 5.55 30.67 0.17 -3.81 16 30 H 0.08 0.55 6.53 -2.39 -0.02 0.53 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 1.21 6.36 -2.39 -0.02 1.19 16 34 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 35 H 0.11 0.67 6.36 -2.39 -0.02 0.66 16 36 H 0.09 0.76 8.01 -2.38 -0.02 0.74 16 37 H 0.06 0.58 8.11 -2.39 -0.02 0.56 16 38 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 1.88 6.51 -2.38 -0.02 1.86 16 41 H 0.07 1.49 8.04 -2.39 -0.02 1.47 16 42 H 0.42 10.97 8.07 -92.70 -0.75 10.22 16 43 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 44 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 45 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 46 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 47 H 0.06 3.22 6.17 -2.39 -0.01 3.21 16 48 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 49 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.07 2.61 7.94 -2.39 -0.02 2.59 16 51 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 52 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -68.34 401.16 1.91 -66.43 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.16 Total: 21.94 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 6.35 Total: 27.35 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -6.53 Total: -127.14 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.09 Total: -35.54 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -68.34 1.91 -66.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.148 kcal (2) G-P(sol) polarization free energy of solvation -68.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds