Wall clock time and date at job start Tue Mar 31 2020 20:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47201 * 2 1 4 4 H 1.09000 * 109.99845 * 302.81766 * 3 2 1 5 5 C 1.54313 * 109.77597 * 63.97243 * 3 2 1 6 6 C 1.55162 * 102.86334 * 141.88689 * 5 3 2 7 7 H 1.08998 * 111.00431 * 82.38116 * 6 5 3 8 8 C 1.53003 * 111.00211 * 206.23096 * 6 5 3 9 9 C 1.54903 * 101.58058 * 324.30511 * 6 5 3 10 10 N 1.47019 * 109.88566 * 181.72436 * 3 2 1 11 11 C 1.34777 * 125.64569 * 61.67341 * 10 3 2 12 12 O 1.21343 * 120.00130 * 355.09493 * 11 10 3 13 13 C 1.49458 * 119.99694 * 175.09846 * 11 10 3 14 14 O 1.21348 * 120.00029 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99694 * 180.02562 * 13 11 10 16 16 C 1.46498 * 119.99878 * 179.97438 * 15 13 11 17 17 C 1.53041 * 109.46275 * 205.00143 * 16 15 13 18 18 C 1.53193 * 109.31301 * 178.61583 * 17 16 15 19 19 N 1.46924 * 108.77237 * 54.63481 * 18 17 16 20 20 C 1.36937 * 120.62552 * 126.37090 * 19 18 17 21 21 H 1.08001 * 119.99613 * 210.24734 * 20 19 18 22 22 C 1.38809 * 120.00391 * 30.24550 * 20 19 18 23 23 N 1.31622 * 120.00290 * 196.78519 * 22 20 19 24 24 Si 1.86802 * 119.99842 * 16.78052 * 22 20 19 25 25 H 1.48506 * 109.47089 * 269.98115 * 24 22 20 26 26 H 1.48492 * 109.47074 * 29.98522 * 24 22 20 27 27 H 1.48497 * 109.47026 * 149.98525 * 24 22 20 28 28 C 1.46920 * 118.73991 * 306.63860 * 19 18 17 29 29 C 1.52759 * 109.00763 * 53.31763 * 28 19 18 30 30 H 1.09000 * 109.46944 * 184.03841 * 1 2 3 31 31 H 1.08996 * 109.47505 * 304.04344 * 1 2 3 32 32 H 1.09001 * 109.46779 * 64.04074 * 1 2 3 33 33 H 1.08997 * 109.47558 * 239.99321 * 2 1 3 34 34 H 1.09001 * 109.46390 * 119.99727 * 2 1 3 35 35 H 1.09005 * 110.92406 * 23.47069 * 5 3 2 36 36 H 1.09001 * 110.74599 * 260.21841 * 5 3 2 37 37 H 1.09002 * 109.47097 * 173.65058 * 8 6 5 38 38 H 1.08996 * 109.46949 * 293.64946 * 8 6 5 39 39 H 1.09000 * 109.47016 * 53.64797 * 8 6 5 40 40 H 1.09000 * 110.36802 * 278.17327 * 9 6 5 41 41 H 1.09000 * 110.46180 * 155.89554 * 9 6 5 42 42 H 0.97001 * 120.00151 * 359.97438 * 15 13 11 43 43 H 1.09004 * 109.46263 * 324.97727 * 16 15 13 44 44 H 1.08999 * 109.49415 * 58.66390 * 17 16 15 45 45 H 1.08997 * 109.49811 * 298.56857 * 17 16 15 46 46 H 1.09001 * 109.58369 * 294.84759 * 18 17 16 47 47 H 1.08996 * 109.58120 * 174.42298 * 18 17 16 48 48 H 0.96999 * 120.00030 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.58412 * 173.14759 * 28 19 18 50 50 H 1.08996 * 109.58720 * 293.57072 * 28 19 18 51 51 H 1.08998 * 109.56510 * 185.54936 * 29 28 19 52 52 H 1.09001 * 109.38970 * 65.51155 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6409 1.9789 -0.8608 5 6 1.6133 2.1471 1.3049 6 6 2.8487 3.0222 1.6448 7 1 2.8327 3.9559 1.0827 8 6 2.9330 3.2914 3.1486 9 6 4.0122 2.1126 1.1775 10 7 3.5096 1.4533 -0.0416 11 6 4.2710 0.9491 -1.0328 12 8 3.7519 0.3522 -1.9530 13 6 5.7548 1.1251 -0.9985 14 8 6.2740 1.7215 -0.0781 15 7 6.5162 0.6213 -1.9900 16 6 7.9706 0.7943 -1.9567 17 6 8.5251 0.7243 -3.3814 18 6 10.0414 0.9400 -3.3461 19 7 10.6358 -0.0322 -2.4186 20 6 11.6568 -0.8495 -2.8246 21 1 11.7689 -1.8310 -2.3881 22 6 12.5476 -0.4165 -3.7972 23 7 13.3111 -1.2861 -4.4244 24 14 12.6628 1.4003 -4.2159 25 1 11.7050 1.7190 -5.3051 26 1 12.3319 2.2072 -3.0140 27 1 14.0430 1.7190 -4.6615 28 6 10.1099 -0.1151 -1.0493 29 6 8.5967 -0.3152 -1.1087 30 1 -0.3633 -1.0251 0.0724 31 1 -0.3634 0.5753 0.8515 32 1 -0.3633 0.4499 -0.9240 33 1 1.8935 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.4256 1.4210 2.0959 36 1 0.7341 2.7694 1.1379 37 1 3.8653 3.8095 3.3733 38 1 2.0901 3.9110 3.4545 39 1 2.9037 2.3453 3.6892 40 1 4.2443 1.3708 1.9417 41 1 4.8949 2.7099 0.9492 42 1 6.1012 0.1442 -2.7256 43 1 8.2111 1.7639 -1.5207 44 1 8.0614 1.4999 -3.9908 45 1 8.3068 -0.2542 -3.8091 46 1 10.2586 1.9518 -3.0036 47 1 10.4546 0.7931 -4.3439 48 1 13.9338 -0.9835 -5.1037 49 1 10.5685 -0.9579 -0.5321 50 1 10.3330 0.8088 -0.5157 51 1 8.1839 -0.2794 -0.1005 52 1 8.3771 -1.2840 -1.5575 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588123625.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:24 Heat of formation + Delta-G solvation = -72.132200 kcal Electronic energy + Delta-G solvation = -30369.762685 eV Core-core repulsion = 26368.702680 eV Total energy + Delta-G solvation = -4001.060005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.06789 -40.58552 -39.23571 -38.82752 -36.25525 -34.77800 -34.17083 -33.73749 -32.05589 -31.89475 -29.50150 -27.66714 -27.23306 -25.97918 -24.66794 -24.20486 -23.26249 -21.92920 -21.49532 -21.29951 -20.56225 -19.09020 -18.46179 -18.31706 -17.57531 -17.18427 -16.71969 -16.40207 -15.97332 -15.77619 -15.50108 -15.41024 -15.27604 -14.89158 -14.74735 -14.57014 -14.42903 -14.19311 -14.11439 -13.90229 -13.65996 -13.55977 -13.49700 -13.04330 -12.75209 -12.65406 -12.61842 -12.52245 -12.40668 -12.27760 -12.13113 -12.03585 -11.83766 -11.61787 -11.59341 -11.56662 -11.39323 -11.36643 -10.77855 -10.52025 -10.26719 -9.84070 -8.94168 -8.16181 -5.53608 0.28896 1.17158 1.30232 1.42849 1.51847 2.07178 2.38535 2.41501 3.06932 3.19177 3.32218 3.48408 3.62947 3.70298 3.80102 3.89379 4.06278 4.15402 4.17314 4.27597 4.29649 4.40908 4.44487 4.51978 4.56745 4.61119 4.64504 4.71854 4.76281 4.80625 4.86194 4.87980 4.90568 4.95595 5.03941 5.05032 5.10238 5.12859 5.13949 5.14509 5.22463 5.29681 5.34183 5.37263 5.44991 5.47078 5.87778 5.99666 6.13089 6.20513 6.61725 6.88916 6.90328 7.59657 8.00531 9.03641 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023400 B = 0.002373 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.282445 B =11797.048385 C =12296.414268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.129 3.871 4 H 0.076 0.924 5 C -0.113 4.113 6 C -0.101 4.101 7 H 0.087 0.913 8 C -0.137 4.137 9 C 0.091 3.909 10 N -0.586 5.586 11 C 0.518 3.482 12 O -0.543 6.543 13 C 0.508 3.492 14 O -0.532 6.532 15 N -0.685 5.685 16 C 0.159 3.841 17 C -0.131 4.131 18 C 0.120 3.880 19 N -0.620 5.620 20 C -0.249 4.249 21 H 0.050 0.950 22 C -0.035 4.035 23 N -0.959 5.959 24 Si 0.951 3.049 25 H -0.268 1.268 26 H -0.260 1.260 27 H -0.312 1.312 28 C 0.149 3.851 29 C -0.130 4.130 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.416 0.584 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.039 0.961 47 H 0.059 0.941 48 H 0.262 0.738 49 H 0.059 0.941 50 H 0.036 0.964 51 H 0.071 0.929 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.436 10.439 13.663 34.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.027 3.973 4 H 0.094 0.906 5 C -0.151 4.151 6 C -0.121 4.121 7 H 0.105 0.895 8 C -0.195 4.195 9 C -0.030 4.030 10 N -0.318 5.318 11 C 0.301 3.699 12 O -0.421 6.421 13 C 0.288 3.712 14 O -0.410 6.410 15 N -0.336 5.336 16 C 0.055 3.945 17 C -0.170 4.170 18 C -0.005 4.005 19 N -0.345 5.345 20 C -0.379 4.379 21 H 0.068 0.932 22 C -0.230 4.230 23 N -0.605 5.605 24 Si 0.779 3.221 25 H -0.194 1.194 26 H -0.185 1.185 27 H -0.241 1.241 28 C 0.024 3.976 29 C -0.170 4.170 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.253 0.747 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.054 0.946 51 H 0.090 0.910 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -29.172 10.490 13.681 33.885 hybrid contribution 0.790 -0.057 -1.046 1.312 sum -28.381 10.433 12.635 32.772 Atomic orbital electron populations 1.21695 0.93017 1.02564 1.02742 1.21863 0.97931 0.95524 1.01916 1.22012 0.77496 0.97374 1.00409 0.90579 1.22864 0.98490 0.98911 0.94814 1.22408 0.93269 0.97921 0.98458 0.89482 1.21668 1.02827 1.02464 0.92493 1.22934 0.98883 0.96244 0.84965 1.48491 1.07961 1.55489 1.19898 1.19807 0.87494 0.80193 0.82405 1.90734 1.74471 1.41472 1.35405 1.20170 0.87889 0.79987 0.83106 1.90690 1.74546 1.41362 1.34385 1.45945 1.07428 1.55275 1.24993 1.20908 0.77197 0.99624 0.96727 1.22198 0.96132 1.03346 0.95351 1.21427 0.92524 0.92420 0.94140 1.44491 1.38574 1.43014 1.08425 1.18832 1.03927 0.95325 1.19812 0.93192 1.26005 0.96561 1.01510 0.98905 1.69937 1.28174 1.35280 1.27156 0.85876 0.75363 0.82094 0.78741 1.19440 1.18477 1.24143 1.20917 0.91995 0.99697 0.85026 1.22164 0.96457 0.98502 0.99883 0.92230 0.90525 0.92621 0.93192 0.91898 0.89002 0.87604 0.92354 0.90591 0.91975 0.90892 0.89164 0.74702 0.89680 0.89169 0.91162 0.94360 0.92263 0.92904 0.92216 0.94587 0.90997 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.79 71.98 0.70 -0.81 16 2 C -0.13 -2.14 5.37 30.59 0.16 -1.97 16 3 C 0.13 1.98 2.97 45.34 0.13 2.12 16 4 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 5 C -0.11 -0.97 4.85 31.78 0.15 -0.82 16 6 C -0.10 -1.06 3.64 -9.40 -0.03 -1.10 16 7 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 8 C -0.14 -1.03 9.29 71.98 0.67 -0.36 16 9 C 0.09 1.57 5.70 86.85 0.50 2.07 16 10 N -0.59 -12.05 3.07 -789.66 -2.42 -14.47 16 11 C 0.52 13.42 7.73 87.27 0.67 14.09 16 12 O -0.54 -15.95 15.31 -3.22 -0.05 -16.00 16 13 C 0.51 13.88 7.82 87.27 0.68 14.56 16 14 O -0.53 -15.90 13.37 -3.24 -0.04 -15.95 16 15 N -0.68 -18.16 5.07 -443.72 -2.25 -20.41 16 16 C 0.16 4.76 2.42 45.02 0.11 4.87 16 17 C -0.13 -4.14 5.55 30.67 0.17 -3.97 16 18 C 0.12 4.89 4.18 86.36 0.36 5.25 16 19 N -0.62 -28.80 2.75 -699.96 -1.92 -30.72 16 20 C -0.25 -14.11 10.04 84.03 0.84 -13.26 16 21 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 22 C -0.04 -2.05 5.28 84.86 0.45 -1.60 16 23 N -0.96 -60.35 13.97 21.65 0.30 -60.05 16 24 Si 0.95 46.11 24.30 68.60 1.67 47.78 16 25 H -0.27 -12.05 6.55 99.48 0.65 -11.40 16 26 H -0.26 -12.08 6.61 99.48 0.66 -11.42 16 27 H -0.31 -15.52 7.11 99.48 0.71 -14.81 16 28 C 0.15 5.77 6.49 86.22 0.56 6.33 16 29 C -0.13 -4.22 5.64 30.53 0.17 -4.05 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.52 7.20 -2.39 -0.02 0.50 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 1.11 6.64 -2.39 -0.02 1.09 16 34 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 35 H 0.09 0.64 7.65 -2.38 -0.02 0.63 16 36 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.06 0.45 8.11 -2.39 -0.02 0.43 16 40 H 0.07 1.25 8.04 -2.39 -0.02 1.23 16 41 H 0.09 1.91 5.88 -2.39 -0.01 1.89 16 42 H 0.42 10.17 8.07 -92.71 -0.75 9.42 16 43 H 0.09 2.66 7.58 -2.38 -0.02 2.64 16 44 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.04 1.50 6.99 -2.39 -0.02 1.49 16 47 H 0.06 2.65 4.54 -2.39 -0.01 2.64 16 48 H 0.26 15.66 8.31 -92.71 -0.77 14.88 16 49 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 50 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -69.74 395.66 1.64 -68.10 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.05 Total: 20.34 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 6.31 Total: 21.37 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -6.29 Total: -125.65 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.09 Total: -31.95 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.67 Total: 47.78 kcal Total: -69.74 1.64 -68.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123625.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.036 kcal (2) G-P(sol) polarization free energy of solvation -69.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds