Wall clock time and date at job start Tue Mar 31 2020 20:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.46793 * 2 1 4 4 H 1.09005 * 109.87895 * 55.94407 * 3 2 1 5 5 C 1.54320 * 110.01369 * 294.84396 * 3 2 1 6 6 C 1.55160 * 102.94555 * 218.31998 * 5 3 2 7 7 H 1.08998 * 111.00176 * 153.57274 * 6 5 3 8 8 C 1.52998 * 111.03456 * 277.41130 * 6 5 3 9 9 C 1.54909 * 101.58206 * 35.49713 * 6 5 3 10 10 N 1.47022 * 109.88609 * 176.95849 * 3 2 1 11 11 C 1.34778 * 125.64657 * 298.47841 * 10 3 2 12 12 O 1.21353 * 120.00167 * 4.39260 * 11 10 3 13 13 C 1.49447 * 120.00326 * 184.38789 * 11 10 3 14 14 O 1.21356 * 119.99592 * 359.97438 * 13 11 10 15 15 N 1.34773 * 120.00659 * 179.97438 * 13 11 10 16 16 C 1.46499 * 120.00436 * 179.97438 * 15 13 11 17 17 C 1.53042 * 109.46060 * 275.03071 * 16 15 13 18 18 C 1.53189 * 109.31222 * 178.60106 * 17 16 15 19 19 N 1.46932 * 108.76598 * 54.65402 * 18 17 16 20 20 C 1.36930 * 120.62860 * 126.40791 * 19 18 17 21 21 H 1.07996 * 120.00224 * 332.18828 * 20 19 18 22 22 C 1.38814 * 120.00011 * 152.19260 * 20 19 18 23 23 N 1.31620 * 120.00095 * 344.45708 * 22 20 19 24 24 Si 1.86801 * 120.00411 * 164.45778 * 22 20 19 25 25 H 1.48504 * 109.46661 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47203 * 119.99568 * 24 22 20 27 27 H 1.48494 * 109.47323 * 240.00169 * 24 22 20 28 28 C 1.46927 * 118.73603 * 306.38445 * 19 18 17 29 29 C 1.53035 * 109.45917 * 154.97396 * 16 15 13 30 30 H 1.08996 * 109.47408 * 65.89897 * 1 2 3 31 31 H 1.09005 * 109.47216 * 185.89558 * 1 2 3 32 32 H 1.08998 * 109.47826 * 305.89241 * 1 2 3 33 33 H 1.08996 * 109.47523 * 240.00005 * 2 1 3 34 34 H 1.09001 * 109.47113 * 119.99679 * 2 1 3 35 35 H 1.09004 * 110.71927 * 336.68263 * 5 3 2 36 36 H 1.08995 * 110.72581 * 99.95333 * 5 3 2 37 37 H 1.09003 * 109.47219 * 173.66995 * 8 6 5 38 38 H 1.09000 * 109.47258 * 293.66742 * 8 6 5 39 39 H 1.08999 * 109.47096 * 53.66480 * 8 6 5 40 40 H 1.08997 * 110.36780 * 204.15387 * 9 6 5 41 41 H 1.09004 * 110.36543 * 81.83173 * 9 6 5 42 42 H 0.97004 * 119.99844 * 0.02562 * 15 13 11 43 43 H 1.08998 * 109.45790 * 35.00387 * 16 15 13 44 44 H 1.09001 * 109.49811 * 298.56432 * 17 16 15 45 45 H 1.08994 * 109.50028 * 58.66108 * 17 16 15 46 46 H 1.09002 * 109.59907 * 294.87138 * 18 17 16 47 47 H 1.08995 * 109.70481 * 174.50727 * 18 17 16 48 48 H 0.97002 * 120.00698 * 180.02562 * 23 22 20 49 49 H 1.08994 * 109.58780 * 293.81973 * 28 19 18 50 50 H 1.08998 * 109.58158 * 173.39568 * 28 19 18 51 51 H 1.09000 * 109.49894 * 301.33871 * 29 16 15 52 52 H 1.08998 * 109.50120 * 61.43794 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6221 1.9833 0.8493 5 6 1.6415 2.1435 -1.3158 6 6 2.8863 3.0120 -1.6377 7 1 2.9683 3.1954 -2.7090 8 6 2.8531 4.3290 -0.8597 9 6 4.0373 2.1022 -1.1403 10 7 3.5082 1.4539 0.0734 11 6 4.2481 0.9549 1.0833 12 8 3.7083 0.3705 1.9998 13 6 5.7333 1.1210 1.0747 14 8 6.2731 1.7048 0.1579 15 7 6.4731 0.6224 2.0848 16 6 7.9291 0.7848 2.0760 17 6 8.5624 -0.3385 1.2518 18 6 10.0817 -0.1457 1.2157 19 7 10.5796 -0.0553 2.5951 20 6 11.5877 -0.8746 3.0280 21 1 11.7255 -1.8460 2.5768 22 6 12.4327 -0.4565 4.0469 23 7 12.4741 0.8141 4.3878 24 14 13.5112 -1.6970 4.9342 25 1 13.2800 -3.0495 4.3662 26 1 14.9385 -1.3254 4.7611 27 1 13.1729 -1.7023 6.3801 28 6 9.9754 0.9312 3.5010 29 6 8.4573 0.7265 3.5111 30 1 -0.3634 0.4196 -0.9380 31 1 -0.3634 -1.0223 0.1056 32 1 -0.3635 0.6024 0.8325 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.4671 1.4121 -2.1050 36 1 0.7619 2.7701 -1.1681 37 1 3.7880 4.8672 -1.0164 38 1 2.0201 4.9378 -1.2113 39 1 2.7276 4.1204 0.2027 40 1 4.9160 2.7001 -0.8987 41 1 4.2821 1.3539 -1.8942 42 1 6.0417 0.1554 2.8174 43 1 8.1843 1.7478 1.6340 44 1 8.3283 -1.3006 1.7075 45 1 8.1682 -0.3111 0.2360 46 1 10.3210 0.7729 0.6800 47 1 10.5479 -0.9935 0.7137 48 1 13.0648 1.1065 5.0995 49 1 10.2061 1.9375 3.1516 50 1 10.3696 0.7923 4.5076 51 1 7.9882 1.5120 4.1036 52 1 8.2242 -0.2457 3.9454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588123626.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:29 Heat of formation + Delta-G solvation = -56.325700 kcal Electronic energy + Delta-G solvation = -30416.861107 eV Core-core repulsion = 26416.486523 eV Total energy + Delta-G solvation = -4000.374584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.03385 -39.43816 -37.95212 -37.32827 -34.61545 -34.07822 -32.79946 -32.12165 -30.20150 -29.49341 -28.69280 -27.01077 -25.99483 -24.76364 -23.40285 -22.30999 -22.02556 -21.11797 -20.41685 -19.83808 -19.13532 -17.71303 -17.04850 -16.70476 -16.30254 -15.71361 -15.47438 -14.93395 -14.87132 -14.51070 -14.11817 -13.95688 -13.86990 -13.70233 -13.66062 -13.52801 -13.16175 -13.02263 -12.72341 -12.59665 -12.42506 -12.34194 -12.00314 -11.88996 -11.60107 -11.51144 -11.42471 -11.12113 -11.07669 -10.97752 -10.86065 -10.75144 -10.66946 -10.50132 -10.31325 -10.05639 -9.83353 -9.66688 -9.32990 -8.97276 -8.80303 -8.48681 -6.71149 -5.80811 -3.23812 1.46364 2.26106 3.25280 3.36306 3.44462 3.46564 3.48974 4.11543 4.17296 4.44823 4.48158 4.50058 4.70597 4.83248 4.86514 5.03102 5.13140 5.18213 5.27472 5.28788 5.37887 5.38226 5.45876 5.51944 5.53302 5.59141 5.64417 5.67071 5.73309 5.77072 5.80617 5.85672 5.89509 6.00177 6.03362 6.13710 6.20577 6.27582 6.47513 6.49405 6.54944 6.73534 6.78607 6.94528 7.05476 7.30462 7.34534 7.62160 7.75089 7.78539 8.10479 8.42946 9.19108 9.81892 10.38162 11.27938 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025501 B = 0.002262 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.741358 B =12373.599834 C =12823.982668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.137 3.863 4 H 0.078 0.922 5 C -0.123 4.123 6 C -0.110 4.110 7 H 0.092 0.908 8 C -0.143 4.143 9 C 0.096 3.904 10 N -0.588 5.588 11 C 0.521 3.479 12 O -0.523 6.523 13 C 0.505 3.495 14 O -0.521 6.521 15 N -0.690 5.690 16 C 0.149 3.851 17 C -0.140 4.140 18 C 0.148 3.852 19 N -0.593 5.593 20 C -0.250 4.250 21 H 0.067 0.933 22 C 0.001 3.999 23 N -0.905 5.905 24 Si 0.903 3.097 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.174 3.826 29 C -0.148 4.148 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.408 0.592 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.021 0.979 47 H 0.057 0.943 48 H 0.254 0.746 49 H 0.022 0.978 50 H 0.096 0.904 51 H 0.056 0.944 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.026 3.981 -11.063 26.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.035 3.965 4 H 0.096 0.904 5 C -0.161 4.161 6 C -0.129 4.129 7 H 0.111 0.889 8 C -0.200 4.200 9 C -0.026 4.026 10 N -0.322 5.322 11 C 0.304 3.696 12 O -0.399 6.399 13 C 0.285 3.715 14 O -0.397 6.397 15 N -0.341 5.341 16 C 0.046 3.954 17 C -0.180 4.180 18 C 0.021 3.979 19 N -0.316 5.316 20 C -0.380 4.380 21 H 0.085 0.915 22 C -0.198 4.198 23 N -0.549 5.549 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.047 3.953 29 C -0.188 4.188 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.243 0.757 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.039 0.961 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.114 0.886 51 H 0.075 0.925 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.725 4.119 -11.024 26.484 hybrid contribution 0.315 -0.832 0.819 1.209 sum -23.410 3.287 -10.206 25.748 Atomic orbital electron populations 1.21707 0.94992 1.01988 1.01754 1.21926 0.96262 0.95996 1.03474 1.21749 0.79267 0.96832 0.98686 0.90409 1.22817 0.98206 0.98817 0.96271 1.22431 0.94515 0.95084 1.00824 0.88926 1.21750 1.02158 0.95857 1.00274 1.22828 0.97966 0.96041 0.85796 1.48317 1.06869 1.57165 1.19839 1.20059 0.88111 0.79615 0.81796 1.90735 1.73322 1.40709 1.35093 1.19950 0.87349 0.80541 0.83617 1.90687 1.73024 1.41313 1.34715 1.46225 1.08727 1.55522 1.23621 1.21234 0.75744 1.00078 0.98299 1.22398 0.98938 0.98021 0.98640 1.20866 0.90217 0.98882 0.87904 1.44115 1.39677 1.42273 1.05530 1.19242 1.05866 0.95708 1.17173 0.91541 1.25063 0.97595 0.95596 1.01507 1.70008 1.40175 1.13052 1.31700 0.86203 0.80041 0.80851 0.79566 1.20266 1.21713 1.21553 1.20793 0.85486 0.91307 0.97708 1.22575 1.01490 1.01417 0.93294 0.92631 0.92453 0.92580 0.91783 0.90185 0.90209 0.89843 0.91988 0.92341 0.92629 0.87277 0.91056 0.75678 0.89589 0.92076 0.92661 0.96097 0.92424 0.93616 0.96039 0.88583 0.92520 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.64 37.15 0.36 -0.63 16 2 C -0.14 -1.24 5.38 -26.73 -0.14 -1.38 16 3 C 0.14 1.23 2.56 -66.95 -0.17 1.06 16 4 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 5 C -0.12 -0.77 5.13 -24.90 -0.13 -0.90 16 6 C -0.11 -0.76 3.72 -88.47 -0.33 -1.08 16 7 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 8 C -0.14 -1.01 9.24 37.16 0.34 -0.66 16 9 C 0.10 0.94 5.68 -2.53 -0.01 0.93 16 10 N -0.59 -6.65 3.05 -163.52 -0.50 -7.15 16 11 C 0.52 7.27 7.73 -11.59 -0.09 7.18 16 12 O -0.52 -8.09 15.30 5.49 0.08 -8.01 16 13 C 0.51 7.67 7.82 -11.59 -0.09 7.58 16 14 O -0.52 -8.62 13.37 5.49 0.07 -8.54 16 15 N -0.69 -10.45 5.07 -54.20 -0.27 -10.73 16 16 C 0.15 2.58 2.42 -67.89 -0.16 2.42 16 17 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 18 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 19 N -0.59 -14.67 3.00 -172.32 -0.52 -15.19 16 20 C -0.25 -6.79 9.60 -15.06 -0.14 -6.93 16 21 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 22 C 0.00 0.02 4.96 -17.43 -0.09 -0.07 16 23 N -0.90 -25.91 11.08 55.49 0.61 -25.30 16 24 Si 0.90 21.52 29.58 -169.99 -5.03 16.49 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 29 C -0.15 -2.72 5.55 -26.61 -0.15 -2.87 16 30 H 0.05 0.30 7.60 -51.93 -0.39 -0.09 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.08 0.93 6.61 -51.93 -0.34 0.58 16 35 H 0.08 0.44 7.80 -51.93 -0.41 0.04 16 36 H 0.08 0.41 8.05 -51.93 -0.42 0.00 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 0.46 7.82 -51.93 -0.41 0.06 16 40 H 0.11 1.27 5.81 -51.93 -0.30 0.97 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.41 5.72 8.07 -40.82 -0.33 5.39 16 43 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.10 2.50 5.98 -51.93 -0.31 2.19 16 51 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 402.02 15.07 6.06 6.06 Total: -1.00 -30.33 402.02 -9.67 -39.99 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -9.18 Total: 3.27 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -1.00 Total: 9.10 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.68 Total: -58.36 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.16 Total: -16.55 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.33 -9.67 -39.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123626.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.331 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds