Wall clock time and date at job start Tue Mar 31 2020 19:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47429 * 2 1 4 4 H 1.09002 * 109.49357 * 304.93020 * 3 2 1 5 5 C 1.53041 * 109.49819 * 184.84022 * 3 2 1 6 6 C 1.53043 * 109.53948 * 178.68339 * 5 3 2 7 7 C 1.52759 * 109.38391 * 61.23563 * 6 5 3 8 8 N 1.46921 * 109.00835 * 305.59026 * 7 6 5 9 9 C 1.34778 * 120.63362 * 233.58407 * 8 7 6 10 10 O 1.21350 * 120.00296 * 171.18884 * 9 8 7 11 11 C 1.49451 * 119.99564 * 351.18809 * 9 8 7 12 12 O 1.21351 * 120.00254 * 353.35837 * 11 9 8 13 13 N 1.34774 * 119.99971 * 173.36478 * 11 9 8 14 14 C 1.46505 * 120.00090 * 179.97438 * 13 11 9 15 15 C 1.53033 * 109.45930 * 274.74954 * 14 13 11 16 16 C 1.53196 * 109.31480 * 178.59867 * 15 14 13 17 17 N 1.46932 * 108.75991 * 54.65378 * 16 15 14 18 18 C 1.36944 * 120.62447 * 126.36506 * 17 16 15 19 19 H 1.07993 * 119.99812 * 327.45725 * 18 17 16 20 20 C 1.38810 * 119.99747 * 147.46056 * 18 17 16 21 21 N 1.31627 * 119.99626 * 343.99586 * 20 18 17 22 22 Si 1.86799 * 120.00037 * 163.99670 * 20 18 17 23 23 H 1.48494 * 109.46805 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46679 * 120.00101 * 22 20 18 25 25 H 1.48496 * 109.46877 * 239.99594 * 22 20 18 26 26 C 1.46923 * 118.74254 * 306.38700 * 17 16 15 27 27 C 1.53044 * 109.45911 * 154.69397 * 14 13 11 28 28 C 1.46927 * 118.73835 * 53.31105 * 8 7 6 29 29 H 1.09000 * 109.46790 * 300.00515 * 1 2 3 30 30 H 1.09000 * 109.47152 * 59.99982 * 1 2 3 31 31 H 1.08999 * 109.47239 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47260 * 239.99362 * 2 1 3 33 33 H 1.09000 * 109.47152 * 120.00018 * 2 1 3 34 34 H 1.09002 * 109.46025 * 298.70258 * 5 3 2 35 35 H 1.08996 * 109.46596 * 58.65822 * 5 3 2 36 36 H 1.08996 * 109.49635 * 181.31360 * 6 5 3 37 37 H 1.09000 * 109.49331 * 301.37644 * 6 5 3 38 38 H 1.08994 * 109.50846 * 185.70971 * 7 6 5 39 39 H 1.09004 * 109.42996 * 65.42354 * 7 6 5 40 40 H 0.97003 * 119.99947 * 359.72521 * 13 11 9 41 41 H 1.09000 * 109.45580 * 34.72191 * 14 13 11 42 42 H 1.09002 * 109.50267 * 298.56678 * 15 14 13 43 43 H 1.09008 * 109.50157 * 58.66352 * 15 14 13 44 44 H 1.09003 * 109.59897 * 294.87048 * 16 15 14 45 45 H 1.08992 * 109.70598 * 174.50362 * 16 15 14 46 46 H 0.97007 * 119.99118 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.58174 * 293.82337 * 26 17 16 48 48 H 1.08997 * 109.70346 * 173.46373 * 26 17 16 49 49 H 1.08997 * 109.50032 * 301.33793 * 27 14 13 50 50 H 1.08994 * 109.49607 * 61.40428 * 27 14 13 51 51 H 1.09005 * 109.59093 * 66.43189 * 28 8 7 52 52 H 1.09006 * 109.58677 * 186.85514 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9815 -0.8424 5 6 3.5656 1.4448 -0.1217 6 6 4.0742 2.8879 -0.1549 7 6 3.6915 3.5903 1.1465 8 7 2.2417 3.4656 1.3492 9 6 1.4817 4.5580 1.5627 10 8 0.2718 4.4636 1.5693 11 6 2.1289 5.8855 1.7912 12 8 3.3347 5.9612 1.9049 13 7 1.3734 6.9987 1.8713 14 6 2.0078 8.3000 2.0959 15 6 2.2131 8.5148 3.5971 16 6 2.9082 9.8606 3.8261 17 7 2.1252 10.9150 3.1674 18 6 1.7125 12.0177 3.8669 19 1 1.4721 11.9325 4.9163 20 6 1.6032 13.2446 3.2270 21 7 2.1813 13.4317 2.0594 22 14 0.6356 14.6301 4.0229 23 1 0.0884 14.1680 5.3237 24 1 1.5310 15.7933 4.2482 25 1 -0.4810 15.0307 3.1297 26 6 1.7929 10.7637 1.7443 27 6 1.1106 9.4076 1.5387 28 6 1.6352 2.1280 1.3087 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9990 0.9266 0.7337 35 1 3.8575 0.9357 -1.0402 36 1 5.1586 2.8889 -0.2650 37 1 3.6225 3.4135 -0.9962 38 1 3.9625 4.6442 1.0846 39 1 4.2183 3.1237 1.9790 40 1 0.4099 6.9388 1.7766 41 1 2.9730 8.3256 1.5901 42 1 1.2462 8.5142 4.1004 43 1 2.8329 7.7126 3.9981 44 1 3.9115 9.8310 3.4010 45 1 2.9702 10.0651 4.8949 46 1 2.1052 14.2893 1.6125 47 1 2.7052 10.8077 1.1494 48 1 1.1178 11.5626 1.4376 49 1 0.9455 9.2411 0.4742 50 1 0.1541 9.3982 2.0610 51 1 1.9908 1.5397 2.1547 52 1 0.5497 2.2174 1.3538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588123719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:33 Heat of formation + Delta-G solvation = -55.321191 kcal Electronic energy + Delta-G solvation = -30194.240599 eV Core-core repulsion = 26193.909574 eV Total energy + Delta-G solvation = -4000.331025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.07006 -39.30169 -37.98990 -37.41313 -35.15349 -34.32119 -32.60393 -32.14459 -30.21465 -29.74846 -29.51235 -26.80658 -25.19045 -24.56406 -23.48576 -22.30565 -21.86058 -21.47565 -20.52138 -20.00210 -19.19112 -17.66444 -17.12700 -16.69278 -16.17057 -15.85085 -15.61062 -15.04747 -14.78318 -14.55765 -14.33165 -14.14111 -13.96271 -13.85623 -13.72410 -13.59027 -13.27029 -13.04708 -12.92112 -12.72128 -12.52396 -12.42845 -12.05765 -11.70843 -11.49003 -11.34288 -11.22216 -11.17976 -11.06600 -10.90679 -10.81643 -10.76281 -10.64343 -10.50060 -10.32739 -10.08854 -9.88354 -9.63077 -9.21129 -8.95038 -8.83675 -8.50223 -6.65755 -5.82968 -3.29305 1.39596 2.27874 3.16631 3.35233 3.43648 3.45931 3.46439 4.22870 4.35336 4.42306 4.47212 4.50526 4.73580 4.91636 4.94062 4.99280 5.05644 5.25642 5.27286 5.29982 5.34584 5.42136 5.44375 5.50783 5.52730 5.56944 5.60659 5.64922 5.69188 5.76981 5.79966 5.84870 5.91547 6.01903 6.05572 6.13471 6.23177 6.29648 6.45111 6.47286 6.52805 6.72999 6.78812 6.91845 6.96171 7.24245 7.30732 7.53773 7.71929 7.79348 8.04536 8.44368 9.18068 9.79873 10.39353 11.25972 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030270 B = 0.002113 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.799462 B =13249.247149 C =13602.268634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.102 4.102 4 H 0.075 0.925 5 C -0.117 4.117 6 C -0.136 4.136 7 C 0.068 3.932 8 N -0.584 5.584 9 C 0.508 3.492 10 O -0.525 6.525 11 C 0.505 3.495 12 O -0.516 6.516 13 N -0.687 5.687 14 C 0.148 3.852 15 C -0.140 4.140 16 C 0.148 3.852 17 N -0.591 5.591 18 C -0.256 4.256 19 H 0.064 0.936 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.288 1.288 26 C 0.178 3.822 27 C -0.148 4.148 28 C 0.111 3.889 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.143 0.857 39 H 0.067 0.933 40 H 0.408 0.592 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.021 0.979 45 H 0.058 0.942 46 H 0.254 0.746 47 H 0.024 0.976 48 H 0.085 0.915 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.070 0.930 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.603 -25.983 -5.385 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.154 4.154 3 C -0.122 4.122 4 H 0.094 0.906 5 C -0.154 4.154 6 C -0.174 4.174 7 C -0.053 4.053 8 N -0.317 5.317 9 C 0.291 3.709 10 O -0.401 6.401 11 C 0.286 3.714 12 O -0.394 6.394 13 N -0.337 5.337 14 C 0.045 3.955 15 C -0.180 4.180 16 C 0.021 3.979 17 N -0.314 5.314 18 C -0.386 4.386 19 H 0.082 0.918 20 C -0.193 4.193 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.051 3.949 27 C -0.188 4.188 28 C -0.011 4.011 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.160 0.840 39 H 0.086 0.914 40 H 0.244 0.756 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.042 0.958 48 H 0.103 0.897 49 H 0.075 0.925 50 H 0.082 0.918 51 H 0.089 0.911 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.814 -25.779 -5.372 26.346 hybrid contribution -0.897 0.533 0.248 1.073 sum -0.084 -25.247 -5.124 25.762 Atomic orbital electron populations 1.21842 0.95607 1.01680 1.02307 1.21519 0.96134 0.95434 1.02283 1.21565 0.96223 0.96301 0.98076 0.90610 1.21620 0.94715 0.96912 1.02189 1.21883 1.01469 0.95801 0.98259 1.22802 0.78385 1.07218 0.96922 1.47940 1.09296 1.05772 1.68680 1.20314 0.86933 0.85670 0.77971 1.90737 1.13615 1.85775 1.49967 1.20040 0.87263 0.85457 0.78664 1.90486 1.13720 1.85550 1.49666 1.46270 1.11546 1.06805 1.69108 1.21256 0.97463 0.79535 0.97209 1.22407 1.01440 0.99622 0.94566 1.20880 0.92933 0.86895 0.97156 1.44049 1.60152 1.20101 1.07114 1.19173 1.38807 0.85914 0.94701 0.91791 1.25177 0.99377 0.97110 0.97639 1.70039 1.43871 1.23725 1.16726 0.86238 0.79628 0.82128 0.78858 1.20177 1.21662 1.21511 1.20665 0.97359 0.91574 0.85266 1.22572 0.99418 0.97511 0.99296 1.21842 1.00121 0.81759 0.97399 0.92334 0.92608 0.92690 0.91593 0.91763 0.91700 0.91658 0.90358 0.91655 0.83999 0.91436 0.75588 0.89445 0.92047 0.92604 0.96078 0.92373 0.93609 0.95832 0.89694 0.92498 0.91844 0.91140 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.12 -0.68 5.41 -26.73 -0.14 -0.83 16 3 C -0.10 -0.76 2.34 -90.50 -0.21 -0.97 16 4 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.12 -0.79 5.17 -26.69 -0.14 -0.92 16 6 C -0.14 -1.08 6.06 -26.83 -0.16 -1.24 16 7 C 0.07 0.68 5.95 -3.94 -0.02 0.66 16 8 N -0.58 -6.57 2.98 -173.54 -0.52 -7.09 16 9 C 0.51 6.96 7.73 -11.58 -0.09 6.87 16 10 O -0.52 -8.05 15.93 5.50 0.09 -7.96 16 11 C 0.50 7.42 7.71 -11.59 -0.09 7.33 16 12 O -0.52 -8.21 12.84 5.50 0.07 -8.14 16 13 N -0.69 -10.07 5.07 -54.19 -0.27 -10.34 16 14 C 0.15 2.49 2.42 -67.89 -0.16 2.33 16 15 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 16 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 17 N -0.59 -14.50 2.97 -172.32 -0.51 -15.01 16 18 C -0.26 -6.92 9.54 -15.06 -0.14 -7.06 16 19 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 20 C 0.01 0.17 4.90 -17.43 -0.09 0.09 16 21 N -0.90 -25.74 11.48 55.49 0.64 -25.10 16 22 Si 0.90 21.40 29.58 -169.99 -5.03 16.37 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.18 4.07 5.27 -3.71 -0.02 4.05 16 27 C -0.15 -2.65 5.55 -26.61 -0.15 -2.80 16 28 C 0.11 1.02 5.34 -3.71 -0.02 1.00 16 29 H 0.06 0.40 6.70 -51.93 -0.35 0.05 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.14 1.73 4.32 -54.74 -0.24 1.50 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.41 5.53 8.09 -40.82 -0.33 5.20 16 41 H 0.09 1.58 7.57 -51.93 -0.39 1.19 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 46 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.08 2.16 6.39 -51.93 -0.33 1.83 16 49 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.10 0.98 5.72 -51.93 -0.30 0.68 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -29.87 398.72 -9.87 -39.74 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -9.08 Total: 3.22 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -1.25 Total: 8.32 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.67 Total: -57.55 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.16 Total: -16.10 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.87 -9.87 -39.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.586 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds