Wall clock time and date at job start Tue Mar 31 2020 19:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47429 * 2 1 4 4 H 1.09002 * 109.49357 * 304.93020 * 3 2 1 5 5 C 1.53041 * 109.49819 * 184.84022 * 3 2 1 6 6 C 1.53043 * 109.53948 * 178.68339 * 5 3 2 7 7 C 1.52759 * 109.38391 * 61.23563 * 6 5 3 8 8 N 1.46921 * 109.00835 * 305.59026 * 7 6 5 9 9 C 1.34778 * 120.63362 * 233.58407 * 8 7 6 10 10 O 1.21350 * 120.00296 * 171.18884 * 9 8 7 11 11 C 1.49451 * 119.99564 * 351.18809 * 9 8 7 12 12 O 1.21351 * 120.00254 * 353.35837 * 11 9 8 13 13 N 1.34774 * 119.99971 * 173.36478 * 11 9 8 14 14 C 1.46505 * 120.00090 * 179.97438 * 13 11 9 15 15 C 1.53033 * 109.45930 * 274.74954 * 14 13 11 16 16 C 1.53196 * 109.31480 * 178.59867 * 15 14 13 17 17 N 1.46932 * 108.75991 * 54.65378 * 16 15 14 18 18 C 1.36944 * 120.62447 * 126.36506 * 17 16 15 19 19 H 1.07993 * 119.99812 * 327.45725 * 18 17 16 20 20 C 1.38810 * 119.99747 * 147.46056 * 18 17 16 21 21 N 1.31627 * 119.99626 * 343.99586 * 20 18 17 22 22 Si 1.86799 * 120.00037 * 163.99670 * 20 18 17 23 23 H 1.48494 * 109.46805 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46679 * 120.00101 * 22 20 18 25 25 H 1.48496 * 109.46877 * 239.99594 * 22 20 18 26 26 C 1.46923 * 118.74254 * 306.38700 * 17 16 15 27 27 C 1.53044 * 109.45911 * 154.69397 * 14 13 11 28 28 C 1.46927 * 118.73835 * 53.31105 * 8 7 6 29 29 H 1.09000 * 109.46790 * 300.00515 * 1 2 3 30 30 H 1.09000 * 109.47152 * 59.99982 * 1 2 3 31 31 H 1.08999 * 109.47239 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47260 * 239.99362 * 2 1 3 33 33 H 1.09000 * 109.47152 * 120.00018 * 2 1 3 34 34 H 1.09002 * 109.46025 * 298.70258 * 5 3 2 35 35 H 1.08996 * 109.46596 * 58.65822 * 5 3 2 36 36 H 1.08996 * 109.49635 * 181.31360 * 6 5 3 37 37 H 1.09000 * 109.49331 * 301.37644 * 6 5 3 38 38 H 1.08994 * 109.50846 * 185.70971 * 7 6 5 39 39 H 1.09004 * 109.42996 * 65.42354 * 7 6 5 40 40 H 0.97003 * 119.99947 * 359.72521 * 13 11 9 41 41 H 1.09000 * 109.45580 * 34.72191 * 14 13 11 42 42 H 1.09002 * 109.50267 * 298.56678 * 15 14 13 43 43 H 1.09008 * 109.50157 * 58.66352 * 15 14 13 44 44 H 1.09003 * 109.59897 * 294.87048 * 16 15 14 45 45 H 1.08992 * 109.70598 * 174.50362 * 16 15 14 46 46 H 0.97007 * 119.99118 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.58174 * 293.82337 * 26 17 16 48 48 H 1.08997 * 109.70346 * 173.46373 * 26 17 16 49 49 H 1.08997 * 109.50032 * 301.33793 * 27 14 13 50 50 H 1.08994 * 109.49607 * 61.40428 * 27 14 13 51 51 H 1.09005 * 109.59093 * 66.43189 * 28 8 7 52 52 H 1.09006 * 109.58677 * 186.85514 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9815 -0.8424 5 6 3.5656 1.4448 -0.1217 6 6 4.0742 2.8879 -0.1549 7 6 3.6915 3.5903 1.1465 8 7 2.2417 3.4656 1.3492 9 6 1.4817 4.5580 1.5627 10 8 0.2718 4.4636 1.5693 11 6 2.1289 5.8855 1.7912 12 8 3.3347 5.9612 1.9049 13 7 1.3734 6.9987 1.8713 14 6 2.0078 8.3000 2.0959 15 6 2.2131 8.5148 3.5971 16 6 2.9082 9.8606 3.8261 17 7 2.1252 10.9150 3.1674 18 6 1.7125 12.0177 3.8669 19 1 1.4721 11.9325 4.9163 20 6 1.6032 13.2446 3.2270 21 7 2.1813 13.4317 2.0594 22 14 0.6356 14.6301 4.0229 23 1 0.0884 14.1680 5.3237 24 1 1.5310 15.7933 4.2482 25 1 -0.4810 15.0307 3.1297 26 6 1.7929 10.7637 1.7443 27 6 1.1106 9.4076 1.5387 28 6 1.6352 2.1280 1.3087 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9990 0.9266 0.7337 35 1 3.8575 0.9357 -1.0402 36 1 5.1586 2.8889 -0.2650 37 1 3.6225 3.4135 -0.9962 38 1 3.9625 4.6442 1.0846 39 1 4.2183 3.1237 1.9790 40 1 0.4099 6.9388 1.7766 41 1 2.9730 8.3256 1.5901 42 1 1.2462 8.5142 4.1004 43 1 2.8329 7.7126 3.9981 44 1 3.9115 9.8310 3.4010 45 1 2.9702 10.0651 4.8949 46 1 2.1052 14.2893 1.6125 47 1 2.7052 10.8077 1.1494 48 1 1.1178 11.5626 1.4376 49 1 0.9455 9.2411 0.4742 50 1 0.1541 9.3982 2.0610 51 1 1.9908 1.5397 2.1547 52 1 0.5497 2.2174 1.3538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588123719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:32 Heat of formation + Delta-G solvation = -72.918027 kcal Electronic energy + Delta-G solvation = -30195.003655 eV Core-core repulsion = 26193.909574 eV Total energy + Delta-G solvation = -4001.094081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.12965 -40.39414 -39.01606 -38.83501 -36.35009 -35.40792 -33.95399 -33.29127 -31.85661 -31.29600 -30.34760 -27.89497 -26.79856 -25.21397 -24.78267 -23.92930 -23.12945 -22.31034 -21.51929 -21.10268 -20.50128 -18.97777 -18.34794 -18.19955 -17.27124 -17.02217 -16.69794 -16.46112 -16.04788 -15.56179 -15.39636 -15.30542 -15.22788 -15.02122 -14.76969 -14.58510 -14.51717 -14.24902 -14.14807 -14.03684 -13.62069 -13.30237 -13.20584 -13.04644 -12.70868 -12.66182 -12.54559 -12.44744 -12.23049 -12.02735 -11.97806 -11.93780 -11.86764 -11.62268 -11.60553 -11.54735 -11.33962 -11.23122 -10.58319 -10.38407 -10.08859 -9.81154 -8.65531 -7.89365 -5.38922 0.27613 1.22915 1.46882 1.49155 1.59588 2.04700 2.40861 2.50914 3.21093 3.28315 3.65541 3.68901 3.80517 3.82749 3.90054 3.98364 4.07983 4.25771 4.27831 4.33315 4.40772 4.43332 4.50421 4.58316 4.63175 4.68429 4.70168 4.80563 4.83000 4.93582 4.94983 4.97942 5.01637 5.04848 5.06778 5.12748 5.16713 5.19215 5.27079 5.29316 5.30899 5.42003 5.42681 5.46963 5.53280 5.64720 5.67248 5.94322 6.20113 6.40702 6.65476 6.89357 7.14578 7.82462 8.37390 9.17615 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030270 B = 0.002113 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.799462 B =13249.247149 C =13602.268634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 C -0.097 4.097 4 H 0.061 0.939 5 C -0.113 4.113 6 C -0.132 4.132 7 C 0.066 3.934 8 N -0.576 5.576 9 C 0.507 3.493 10 O -0.546 6.546 11 C 0.506 3.494 12 O -0.528 6.528 13 N -0.682 5.682 14 C 0.161 3.839 15 C -0.126 4.126 16 C 0.146 3.854 17 N -0.609 5.609 18 C -0.265 4.265 19 H 0.064 0.936 20 C -0.045 4.045 21 N -0.932 5.932 22 Si 0.967 3.033 23 H -0.267 1.267 24 H -0.293 1.293 25 H -0.288 1.288 26 C 0.183 3.817 27 C -0.132 4.132 28 C 0.107 3.893 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.122 0.878 39 H 0.079 0.921 40 H 0.416 0.584 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.014 0.986 45 H 0.058 0.942 46 H 0.251 0.749 47 H 0.002 0.998 48 H 0.055 0.945 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.087 0.913 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 -28.453 -5.180 28.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.148 4.148 3 C -0.116 4.116 4 H 0.079 0.921 5 C -0.150 4.150 6 C -0.170 4.170 7 C -0.055 4.055 8 N -0.309 5.309 9 C 0.290 3.710 10 O -0.425 6.425 11 C 0.287 3.713 12 O -0.407 6.407 13 N -0.333 5.333 14 C 0.057 3.943 15 C -0.166 4.166 16 C 0.020 3.980 17 N -0.332 5.332 18 C -0.396 4.396 19 H 0.082 0.918 20 C -0.241 4.241 21 N -0.577 5.577 22 Si 0.795 3.205 23 H -0.191 1.191 24 H -0.220 1.220 25 H -0.215 1.215 26 C 0.057 3.943 27 C -0.172 4.172 28 C -0.014 4.014 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.140 0.860 39 H 0.097 0.903 40 H 0.253 0.747 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.032 0.968 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.020 0.980 48 H 0.073 0.927 49 H 0.097 0.903 50 H 0.086 0.914 51 H 0.105 0.895 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.732 -28.308 -5.164 28.785 hybrid contribution -0.779 1.229 0.186 1.467 sum -0.047 -27.079 -4.978 27.532 Atomic orbital electron populations 1.21851 0.96101 1.02072 1.01545 1.21491 0.95637 0.94350 1.03312 1.21522 0.96880 0.96907 0.96321 0.92064 1.21612 0.93868 0.96081 1.03434 1.21861 1.02410 0.96328 0.96413 1.22812 0.77631 1.06405 0.98653 1.48092 1.09787 1.05966 1.67012 1.20080 0.86735 0.85740 0.78468 1.90730 1.14266 1.85966 1.51515 1.20267 0.87051 0.85823 0.78122 1.90512 1.14278 1.85931 1.49980 1.46026 1.11889 1.06008 1.69339 1.20897 0.96786 0.80303 0.96317 1.22209 1.01250 0.97800 0.95324 1.20965 0.92603 0.87608 0.96811 1.44302 1.60950 1.20375 1.07614 1.19467 1.38282 0.86856 0.94963 0.91819 1.25913 1.00525 0.99374 0.98328 1.70179 1.45368 1.24083 1.18105 0.85228 0.78018 0.79027 0.78269 1.19113 1.21956 1.21491 1.20472 0.96102 0.93398 0.84329 1.22301 0.99002 0.94947 1.00908 1.22043 0.99433 0.80786 0.99164 0.93163 0.93351 0.91720 0.90523 0.90700 0.90561 0.90258 0.88813 0.92717 0.86041 0.90257 0.74694 0.90572 0.91827 0.91472 0.96780 0.92335 0.93975 0.97960 0.92688 0.90346 0.91362 0.89500 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.67 71.98 0.70 -1.04 16 2 C -0.11 -1.02 5.41 30.59 0.17 -0.86 16 3 C -0.10 -1.24 2.34 -10.72 -0.03 -1.26 16 4 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 5 C -0.11 -1.19 5.17 30.62 0.16 -1.03 16 6 C -0.13 -1.82 6.06 30.53 0.19 -1.64 16 7 C 0.07 1.22 5.95 86.22 0.51 1.73 16 8 N -0.58 -12.23 2.98 -821.32 -2.45 -14.68 16 9 C 0.51 13.46 7.73 87.27 0.67 14.14 16 10 O -0.55 -16.40 15.93 -3.25 -0.05 -16.45 16 11 C 0.51 14.40 7.71 87.27 0.67 15.08 16 12 O -0.53 -16.40 12.84 -3.25 -0.04 -16.44 16 13 N -0.68 -19.21 5.07 -443.74 -2.25 -21.46 16 14 C 0.16 5.28 2.42 45.02 0.11 5.39 16 15 C -0.13 -4.35 5.65 30.67 0.17 -4.18 16 16 C 0.15 6.14 6.52 86.36 0.56 6.70 16 17 N -0.61 -30.26 2.97 -699.09 -2.07 -32.33 16 18 C -0.27 -14.47 9.54 84.03 0.80 -13.67 16 19 H 0.06 3.41 7.88 -2.91 -0.02 3.39 16 20 C -0.05 -2.51 4.90 84.86 0.42 -2.09 16 21 N -0.93 -54.63 11.48 21.65 0.25 -54.38 16 22 Si 0.97 44.45 29.58 68.60 2.03 46.48 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 26 C 0.18 8.57 5.27 86.36 0.45 9.03 16 27 C -0.13 -4.65 5.55 30.67 0.17 -4.48 16 28 C 0.11 1.78 5.34 86.36 0.46 2.24 16 29 H 0.05 0.63 6.70 -2.39 -0.02 0.61 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.12 2.86 4.32 -46.84 -0.20 2.66 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.42 10.70 8.09 -92.71 -0.75 9.95 16 41 H 0.08 2.73 7.57 -2.39 -0.02 2.71 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 46 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 47 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.05 2.89 6.39 -2.39 -0.02 2.87 16 49 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 51 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 52 H 0.08 1.63 5.72 -2.38 -0.01 1.62 16 Total: -1.00 -64.74 398.72 1.57 -63.17 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -0.04 Total: 22.03 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 6.19 Total: 24.06 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -6.52 Total: -122.85 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.09 Total: -32.89 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -64.74 1.57 -63.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.747 kcal (2) G-P(sol) polarization free energy of solvation -64.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds