Wall clock time and date at job start Tue Mar 31 2020 19:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46897 * 2 1 4 4 H 1.08994 * 109.52619 * 54.92451 * 3 2 1 5 5 C 1.53046 * 109.49340 * 175.00382 * 3 2 1 6 6 C 1.53041 * 109.52349 * 181.30856 * 5 3 2 7 7 C 1.53192 * 109.31706 * 298.63976 * 6 5 3 8 8 N 1.46929 * 108.77230 * 54.63418 * 7 6 5 9 9 C 1.34773 * 120.62971 * 126.41559 * 8 7 6 10 10 O 1.21352 * 120.00224 * 175.26791 * 9 8 7 11 11 C 1.49452 * 120.00014 * 355.26987 * 9 8 7 12 12 O 1.21351 * 119.99822 * 6.32171 * 11 9 8 13 13 N 1.34776 * 120.00233 * 186.32005 * 11 9 8 14 14 C 1.46498 * 120.00097 * 180.02562 * 13 11 9 15 15 C 1.53043 * 109.46235 * 275.07026 * 14 13 11 16 16 C 1.53188 * 109.31446 * 178.61665 * 15 14 13 17 17 N 1.46928 * 108.77803 * 54.63470 * 16 15 14 18 18 C 1.36934 * 120.62980 * 126.41225 * 17 16 15 19 19 H 1.07999 * 119.99863 * 215.20435 * 18 17 16 20 20 C 1.38818 * 120.00029 * 35.20720 * 18 17 16 21 21 N 1.31614 * 119.99727 * 355.45376 * 20 18 17 22 22 Si 1.86800 * 119.99910 * 175.44933 * 20 18 17 23 23 H 1.48503 * 109.47081 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47192 * 119.99973 * 22 20 18 25 25 H 1.48496 * 109.46974 * 240.00377 * 22 20 18 26 26 C 1.46925 * 118.73804 * 306.39346 * 17 16 15 27 27 C 1.53046 * 109.45942 * 155.00489 * 14 13 11 28 28 C 1.46921 * 118.73976 * 306.39317 * 8 7 6 29 29 H 1.09003 * 109.46835 * 299.99447 * 1 2 3 30 30 H 1.09000 * 109.47206 * 59.99800 * 1 2 3 31 31 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46623 * 239.99797 * 2 1 3 33 33 H 1.09000 * 109.47206 * 120.00200 * 2 1 3 34 34 H 1.08998 * 109.46281 * 61.29613 * 5 3 2 35 35 H 1.09000 * 109.45777 * 301.31683 * 5 3 2 36 36 H 1.09007 * 109.50124 * 58.59526 * 6 5 3 37 37 H 1.09005 * 109.49594 * 178.68500 * 6 5 3 38 38 H 1.08996 * 109.59167 * 174.42283 * 7 6 5 39 39 H 1.09003 * 109.58327 * 294.85122 * 7 6 5 40 40 H 0.96996 * 120.00067 * 0.02562 * 13 11 9 41 41 H 1.09001 * 109.46180 * 35.03107 * 14 13 11 42 42 H 1.09003 * 109.49607 * 298.57062 * 15 14 13 43 43 H 1.09005 * 109.49719 * 58.66310 * 15 14 13 44 44 H 1.09000 * 109.58852 * 294.84525 * 16 15 14 45 45 H 1.09003 * 109.58693 * 174.42504 * 16 15 14 46 46 H 0.96999 * 119.99592 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.58647 * 293.82345 * 26 17 16 48 48 H 1.08996 * 109.58875 * 173.39592 * 26 17 16 49 49 H 1.08999 * 109.49141 * 301.33287 * 27 14 13 50 50 H 1.08995 * 109.49653 * 61.43668 * 27 14 13 51 51 H 1.08999 * 109.58937 * 173.39430 * 28 8 7 52 52 H 1.08998 * 109.59342 * 293.68004 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 0.8407 5 6 3.5653 1.4450 0.1256 6 6 4.0734 2.8882 0.1585 7 6 3.6947 3.5887 -1.1501 8 7 2.2445 3.4640 -1.3508 9 6 1.4850 4.5558 -1.5682 10 8 0.3037 4.4334 -1.8176 11 6 2.0975 5.9175 -1.5021 12 8 3.2975 6.0370 -1.3670 13 7 1.3172 7.0126 -1.5925 14 6 1.9177 8.3473 -1.5284 15 6 2.0816 8.7629 -0.0646 16 6 2.7413 10.1439 -0.0008 17 7 1.9522 11.0828 -0.8098 18 6 1.4995 12.2578 -0.2717 19 1 0.5402 12.6541 -0.5700 20 6 2.2737 12.9396 0.6572 21 7 3.4006 12.4132 1.0877 22 14 1.7163 14.6041 1.2959 23 1 0.4253 14.9712 0.6602 24 1 1.5403 14.5355 2.7688 25 1 2.7396 15.6286 0.9668 26 6 1.6585 10.7372 -2.2073 27 6 1.0109 9.3495 -2.2464 28 6 1.6383 2.1263 -1.3104 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 4.0009 0.9260 -0.7282 35 1 3.8546 0.9371 1.0457 36 1 3.6191 3.4149 0.9978 37 1 5.1576 2.8897 0.2715 38 1 3.9662 4.6427 -1.0923 39 1 4.2204 3.1188 -1.9814 40 1 0.3579 6.9171 -1.7002 41 1 2.8943 8.3298 -2.0122 42 1 1.1029 8.8047 0.4135 43 1 2.7085 8.0360 0.4520 44 1 3.7552 10.0832 -0.3964 45 1 2.7704 10.4876 1.0333 46 1 3.9413 12.8895 1.7371 47 1 2.5841 10.7248 -2.7830 48 1 0.9732 11.4723 -2.6292 49 1 0.8758 9.0401 -3.2828 50 1 0.0423 9.3859 -1.7477 51 1 0.5530 2.2154 -1.3582 52 1 1.9942 1.5380 -2.1561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588123720.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:36 Heat of formation + Delta-G solvation = -49.076528 kcal Electronic energy + Delta-G solvation = -30336.854420 eV Core-core repulsion = 26336.794184 eV Total energy + Delta-G solvation = -4000.060236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.06352 -39.25975 -37.96270 -37.41604 -35.13813 -34.29536 -32.53134 -32.16811 -30.12237 -29.66738 -29.53891 -26.78021 -25.19484 -24.52074 -23.46489 -22.25439 -21.80808 -21.43428 -20.53286 -19.98223 -19.18330 -17.62481 -17.09743 -16.75334 -15.98418 -15.88024 -15.64640 -15.11151 -14.73086 -14.57715 -14.33185 -14.09312 -13.88046 -13.82003 -13.75510 -13.50651 -13.16353 -13.05783 -12.86771 -12.67726 -12.53132 -12.40699 -12.00271 -11.73632 -11.54991 -11.28345 -11.15153 -11.04038 -11.01889 -10.93144 -10.82713 -10.74945 -10.58517 -10.38112 -10.21861 -10.09097 -9.88504 -9.72179 -9.00217 -8.92122 -8.82202 -8.45686 -6.60233 -5.80681 -3.34441 1.41876 2.30253 3.20988 3.35355 3.43082 3.44758 3.48935 4.25748 4.39447 4.44505 4.45767 4.55274 4.80852 4.96150 4.99610 5.02890 5.10769 5.23477 5.31604 5.34924 5.37977 5.42909 5.46544 5.56983 5.58585 5.61020 5.65182 5.69675 5.74952 5.76426 5.83034 5.91310 5.93969 6.05372 6.12124 6.18141 6.22031 6.35869 6.45433 6.54953 6.64285 6.74033 6.83141 6.91318 6.98620 7.32779 7.42270 7.75104 7.76671 7.80257 8.08285 8.50737 9.21885 9.80306 10.39493 11.25067 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.002255 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.155688 B =12414.545915 C =12739.662554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.103 4.103 4 H 0.075 0.925 5 C -0.117 4.117 6 C -0.133 4.133 7 C 0.041 3.959 8 N -0.580 5.580 9 C 0.508 3.492 10 O -0.528 6.528 11 C 0.507 3.493 12 O -0.511 6.511 13 N -0.686 5.686 14 C 0.146 3.854 15 C -0.148 4.148 16 C 0.169 3.831 17 N -0.595 5.595 18 C -0.255 4.255 19 H 0.065 0.935 20 C 0.008 3.992 21 N -0.903 5.903 22 Si 0.904 3.096 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.288 1.288 26 C 0.149 3.851 27 C -0.141 4.141 28 C 0.111 3.889 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.166 0.834 39 H 0.063 0.937 40 H 0.408 0.592 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.018 0.982 45 H 0.105 0.895 46 H 0.255 0.745 47 H 0.022 0.978 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.065 0.935 51 H 0.094 0.906 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 -23.729 -3.951 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.153 4.153 3 C -0.122 4.122 4 H 0.094 0.906 5 C -0.155 4.155 6 C -0.171 4.171 7 C -0.079 4.079 8 N -0.313 5.313 9 C 0.291 3.709 10 O -0.404 6.404 11 C 0.288 3.712 12 O -0.389 6.389 13 N -0.336 5.336 14 C 0.044 3.956 15 C -0.189 4.189 16 C 0.043 3.957 17 N -0.318 5.318 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.733 3.267 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.022 3.978 27 C -0.181 4.181 28 C -0.011 4.011 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.181 0.819 39 H 0.082 0.918 40 H 0.243 0.757 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.123 0.877 46 H 0.065 0.935 47 H 0.039 0.961 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.084 0.916 51 H 0.112 0.888 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.286 -23.581 -3.881 23.932 hybrid contribution -0.631 0.491 0.358 0.876 sum -1.917 -23.090 -3.523 23.436 Atomic orbital electron populations 1.21847 0.95643 1.01677 1.02286 1.21519 0.96099 0.95459 1.02270 1.21565 0.96363 0.96261 0.98002 0.90621 1.21630 0.94640 0.97129 1.02068 1.21893 1.01403 0.95483 0.98301 1.23465 0.78103 1.09598 0.96757 1.47979 1.09354 1.05643 1.68335 1.20243 0.86409 0.86013 0.78278 1.90732 1.15509 1.86679 1.47488 1.20059 0.87056 0.85847 0.78199 1.90246 1.14285 1.84744 1.49657 1.46256 1.11614 1.05949 1.69737 1.21301 0.97481 0.78322 0.98505 1.22648 1.01542 1.01025 0.93660 1.20996 0.91236 0.83840 0.99668 1.44067 1.62726 1.19637 1.05334 1.19193 0.99683 0.97561 1.21999 0.91726 1.25338 0.95416 0.97888 1.00378 1.69886 1.14288 1.37420 1.33118 0.86201 0.77956 0.84361 0.78169 1.20220 1.21671 1.21474 1.20867 0.96938 0.92005 0.88002 1.22376 0.99393 0.97534 0.98759 1.21824 1.00029 0.81961 0.97333 0.92602 0.92352 0.92693 0.91791 0.91573 0.91825 0.91705 0.91555 0.90504 0.81863 0.91847 0.75655 0.89489 0.92555 0.92845 0.96336 0.87698 0.93481 0.96057 0.92171 0.92416 0.91636 0.88766 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.67 37.16 0.36 -0.68 16 2 C -0.12 -0.74 5.40 -26.73 -0.14 -0.88 16 3 C -0.10 -0.82 2.34 -90.51 -0.21 -1.04 16 4 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.12 -0.88 5.17 -26.69 -0.14 -1.02 16 6 C -0.13 -1.19 6.08 -26.61 -0.16 -1.36 16 7 C 0.04 0.44 6.28 -3.71 -0.02 0.42 16 8 N -0.58 -6.83 2.97 -173.29 -0.51 -7.34 16 9 C 0.51 7.13 7.75 -11.59 -0.09 7.04 16 10 O -0.53 -8.19 15.93 5.50 0.09 -8.10 16 11 C 0.51 7.61 7.78 -11.58 -0.09 7.52 16 12 O -0.51 -8.33 12.68 5.50 0.07 -8.26 16 13 N -0.69 -10.13 5.07 -54.19 -0.27 -10.40 16 14 C 0.15 2.48 2.42 -67.89 -0.16 2.32 16 15 C -0.15 -2.88 5.65 -26.61 -0.15 -3.03 16 16 C 0.17 4.01 5.27 -3.71 -0.02 3.99 16 17 N -0.59 -14.55 3.00 -172.32 -0.52 -15.07 16 18 C -0.25 -6.83 9.56 -15.06 -0.14 -6.98 16 19 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 20 C 0.01 0.23 5.33 -17.43 -0.09 0.14 16 21 N -0.90 -25.69 10.59 55.49 0.59 -25.11 16 22 Si 0.90 21.34 29.56 -169.99 -5.02 16.31 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.15 2.99 6.52 -3.71 -0.02 2.97 16 27 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 28 C 0.11 1.07 5.31 -3.73 -0.02 1.05 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.41 6.70 -51.93 -0.35 0.06 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.17 2.14 3.70 -57.19 -0.21 1.93 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.41 5.48 8.09 -40.82 -0.33 5.15 16 41 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.11 2.82 5.89 -51.93 -0.31 2.51 16 46 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 49 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.09 1.00 5.75 -51.93 -0.30 0.70 16 52 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 397.37 15.07 5.99 5.99 Total: -1.00 -29.49 397.37 -9.89 -39.38 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -9.03 Total: 4.61 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -1.26 Total: 7.99 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.72 Total: -57.92 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.16 Total: -16.37 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.49 -9.89 -39.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123720.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.692 kcal (2) G-P(sol) polarization free energy of solvation -29.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds