Wall clock time and date at job start Tue Mar 31 2020 19:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46897 * 2 1 4 4 H 1.08994 * 109.52619 * 54.92451 * 3 2 1 5 5 C 1.53046 * 109.49340 * 175.00382 * 3 2 1 6 6 C 1.53041 * 109.52349 * 181.30856 * 5 3 2 7 7 C 1.53192 * 109.31706 * 298.63976 * 6 5 3 8 8 N 1.46929 * 108.77230 * 54.63418 * 7 6 5 9 9 C 1.34773 * 120.62971 * 126.41559 * 8 7 6 10 10 O 1.21352 * 120.00224 * 175.26791 * 9 8 7 11 11 C 1.49452 * 120.00014 * 355.26987 * 9 8 7 12 12 O 1.21351 * 119.99822 * 6.32171 * 11 9 8 13 13 N 1.34776 * 120.00233 * 186.32005 * 11 9 8 14 14 C 1.46498 * 120.00097 * 180.02562 * 13 11 9 15 15 C 1.53043 * 109.46235 * 275.07026 * 14 13 11 16 16 C 1.53188 * 109.31446 * 178.61665 * 15 14 13 17 17 N 1.46928 * 108.77803 * 54.63470 * 16 15 14 18 18 C 1.36934 * 120.62980 * 126.41225 * 17 16 15 19 19 H 1.07999 * 119.99863 * 215.20435 * 18 17 16 20 20 C 1.38818 * 120.00029 * 35.20720 * 18 17 16 21 21 N 1.31614 * 119.99727 * 355.45376 * 20 18 17 22 22 Si 1.86800 * 119.99910 * 175.44933 * 20 18 17 23 23 H 1.48503 * 109.47081 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47192 * 119.99973 * 22 20 18 25 25 H 1.48496 * 109.46974 * 240.00377 * 22 20 18 26 26 C 1.46925 * 118.73804 * 306.39346 * 17 16 15 27 27 C 1.53046 * 109.45942 * 155.00489 * 14 13 11 28 28 C 1.46921 * 118.73976 * 306.39317 * 8 7 6 29 29 H 1.09003 * 109.46835 * 299.99447 * 1 2 3 30 30 H 1.09000 * 109.47206 * 59.99800 * 1 2 3 31 31 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46623 * 239.99797 * 2 1 3 33 33 H 1.09000 * 109.47206 * 120.00200 * 2 1 3 34 34 H 1.08998 * 109.46281 * 61.29613 * 5 3 2 35 35 H 1.09000 * 109.45777 * 301.31683 * 5 3 2 36 36 H 1.09007 * 109.50124 * 58.59526 * 6 5 3 37 37 H 1.09005 * 109.49594 * 178.68500 * 6 5 3 38 38 H 1.08996 * 109.59167 * 174.42283 * 7 6 5 39 39 H 1.09003 * 109.58327 * 294.85122 * 7 6 5 40 40 H 0.96996 * 120.00067 * 0.02562 * 13 11 9 41 41 H 1.09001 * 109.46180 * 35.03107 * 14 13 11 42 42 H 1.09003 * 109.49607 * 298.57062 * 15 14 13 43 43 H 1.09005 * 109.49719 * 58.66310 * 15 14 13 44 44 H 1.09000 * 109.58852 * 294.84525 * 16 15 14 45 45 H 1.09003 * 109.58693 * 174.42504 * 16 15 14 46 46 H 0.96999 * 119.99592 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.58647 * 293.82345 * 26 17 16 48 48 H 1.08996 * 109.58875 * 173.39592 * 26 17 16 49 49 H 1.08999 * 109.49141 * 301.33287 * 27 14 13 50 50 H 1.08995 * 109.49653 * 61.43668 * 27 14 13 51 51 H 1.08999 * 109.58937 * 173.39430 * 28 8 7 52 52 H 1.08998 * 109.59342 * 293.68004 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9827 0.8407 5 6 3.5653 1.4450 0.1256 6 6 4.0734 2.8882 0.1585 7 6 3.6947 3.5887 -1.1501 8 7 2.2445 3.4640 -1.3508 9 6 1.4850 4.5558 -1.5682 10 8 0.3037 4.4334 -1.8176 11 6 2.0975 5.9175 -1.5021 12 8 3.2975 6.0370 -1.3670 13 7 1.3172 7.0126 -1.5925 14 6 1.9177 8.3473 -1.5284 15 6 2.0816 8.7629 -0.0646 16 6 2.7413 10.1439 -0.0008 17 7 1.9522 11.0828 -0.8098 18 6 1.4995 12.2578 -0.2717 19 1 0.5402 12.6541 -0.5700 20 6 2.2737 12.9396 0.6572 21 7 3.4006 12.4132 1.0877 22 14 1.7163 14.6041 1.2959 23 1 0.4253 14.9712 0.6602 24 1 1.5403 14.5355 2.7688 25 1 2.7396 15.6286 0.9668 26 6 1.6585 10.7372 -2.2073 27 6 1.0109 9.3495 -2.2464 28 6 1.6383 2.1263 -1.3104 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 4.0009 0.9260 -0.7282 35 1 3.8546 0.9371 1.0457 36 1 3.6191 3.4149 0.9978 37 1 5.1576 2.8897 0.2715 38 1 3.9662 4.6427 -1.0923 39 1 4.2204 3.1188 -1.9814 40 1 0.3579 6.9171 -1.7002 41 1 2.8943 8.3298 -2.0122 42 1 1.1029 8.8047 0.4135 43 1 2.7085 8.0360 0.4520 44 1 3.7552 10.0832 -0.3964 45 1 2.7704 10.4876 1.0333 46 1 3.9413 12.8895 1.7371 47 1 2.5841 10.7248 -2.7830 48 1 0.9732 11.4723 -2.6292 49 1 0.8758 9.0401 -3.2828 50 1 0.0423 9.3859 -1.7477 51 1 0.5530 2.2154 -1.3582 52 1 1.9942 1.5380 -2.1561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588123720.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:35 Heat of formation + Delta-G solvation = -66.536242 kcal Electronic energy + Delta-G solvation = -30337.611530 eV Core-core repulsion = 26336.794184 eV Total energy + Delta-G solvation = -4000.817346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.15928 -40.37988 -39.00020 -38.86530 -36.38152 -35.39567 -33.95281 -33.27383 -31.80059 -31.27835 -30.33551 -27.90882 -26.80769 -25.22007 -24.76745 -23.88668 -23.10086 -22.30634 -21.62154 -21.06040 -20.51621 -18.96353 -18.42466 -18.18896 -17.15373 -17.06116 -16.79725 -16.44148 -16.03861 -15.65507 -15.39970 -15.29041 -15.16533 -15.02464 -14.77347 -14.57294 -14.51697 -14.25984 -14.08605 -13.99326 -13.61764 -13.36144 -13.24915 -12.82217 -12.79523 -12.66182 -12.58482 -12.50445 -12.11224 -11.99309 -11.96419 -11.88737 -11.85625 -11.63466 -11.61376 -11.56421 -11.37466 -11.23983 -10.56752 -10.22269 -10.07470 -9.81384 -8.58069 -7.85670 -5.42441 0.26928 1.22112 1.47561 1.49318 1.59350 2.05989 2.40898 2.50496 3.19431 3.30855 3.67579 3.70231 3.80147 3.82881 3.89858 4.03842 4.08445 4.26257 4.29369 4.32652 4.39792 4.47489 4.49722 4.57668 4.66943 4.67942 4.70120 4.81740 4.83045 4.93922 4.97993 5.00435 5.04519 5.06256 5.06646 5.12665 5.16740 5.18639 5.26693 5.30665 5.33151 5.41962 5.49627 5.52574 5.58558 5.65730 5.81173 5.96188 6.19338 6.46993 6.67281 6.91349 7.18043 7.84842 8.39029 9.18268 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.002255 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.155688 B =12414.545915 C =12739.662554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.109 4.109 3 C -0.098 4.098 4 H 0.059 0.941 5 C -0.112 4.112 6 C -0.130 4.130 7 C 0.039 3.961 8 N -0.574 5.574 9 C 0.507 3.493 10 O -0.547 6.547 11 C 0.506 3.494 12 O -0.526 6.526 13 N -0.679 5.679 14 C 0.159 3.841 15 C -0.133 4.133 16 C 0.177 3.823 17 N -0.613 5.613 18 C -0.262 4.262 19 H 0.070 0.930 20 C -0.047 4.047 21 N -0.934 5.934 22 Si 0.969 3.031 23 H -0.264 1.264 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.144 3.856 27 C -0.126 4.126 28 C 0.107 3.893 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.144 0.856 39 H 0.080 0.920 40 H 0.417 0.583 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.052 0.948 44 H -0.006 1.006 45 H 0.070 0.930 46 H 0.250 0.750 47 H 0.020 0.980 48 H 0.067 0.933 49 H 0.091 0.909 50 H 0.070 0.930 51 H 0.083 0.917 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 -25.686 -4.878 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.117 4.117 4 H 0.077 0.923 5 C -0.150 4.150 6 C -0.168 4.168 7 C -0.081 4.081 8 N -0.306 5.306 9 C 0.289 3.711 10 O -0.425 6.425 11 C 0.288 3.712 12 O -0.405 6.405 13 N -0.330 5.330 14 C 0.056 3.944 15 C -0.173 4.173 16 C 0.051 3.949 17 N -0.337 5.337 18 C -0.392 4.392 19 H 0.087 0.913 20 C -0.243 4.243 21 N -0.580 5.580 22 Si 0.797 3.203 23 H -0.188 1.188 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.018 3.982 27 C -0.166 4.166 28 C -0.014 4.014 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.160 0.840 39 H 0.098 0.902 40 H 0.254 0.746 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.012 0.988 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.038 0.962 48 H 0.086 0.914 49 H 0.110 0.890 50 H 0.089 0.911 51 H 0.101 0.899 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.044 -25.580 -4.828 26.112 hybrid contribution -0.354 1.034 0.628 1.260 sum -2.397 -24.546 -4.200 25.018 Atomic orbital electron populations 1.21854 0.96025 1.02141 1.01548 1.21488 0.95700 0.94224 1.03323 1.21528 0.96868 0.97010 0.96320 0.92283 1.21615 0.93960 0.96047 1.03337 1.21876 1.02200 0.96248 0.96511 1.23423 0.77555 1.08671 0.98436 1.48123 1.09741 1.05930 1.66771 1.20007 0.86275 0.86003 0.78777 1.90724 1.16079 1.86798 1.48922 1.20338 0.86862 0.86379 0.77609 1.90297 1.14955 1.85253 1.49985 1.46020 1.12053 1.05029 1.69869 1.20947 0.97477 0.79662 0.96357 1.22379 1.00739 0.98347 0.95865 1.20669 0.90681 0.86033 0.97510 1.44305 1.62708 1.19431 1.07259 1.19527 0.99859 0.98144 1.21721 0.91285 1.26089 0.95798 1.01137 1.01256 1.70084 1.15546 1.38504 1.33890 0.85181 0.77791 0.80093 0.77250 1.18840 1.21918 1.21863 1.21034 0.97303 0.94344 0.85513 1.22197 0.98695 0.94900 1.00791 1.22025 0.99411 0.80940 0.99002 0.93435 0.93044 0.91626 0.90572 0.90615 0.90446 0.90464 0.93202 0.89158 0.84012 0.90166 0.74574 0.90609 0.92679 0.92976 0.98762 0.91186 0.94038 0.96244 0.91431 0.89037 0.91139 0.89857 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.67 71.98 0.70 -1.15 16 2 C -0.11 -1.13 5.40 30.59 0.17 -0.96 16 3 C -0.10 -1.39 2.34 -10.72 -0.03 -1.41 16 4 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 5 C -0.11 -1.39 5.17 30.62 0.16 -1.23 16 6 C -0.13 -2.15 6.08 30.67 0.19 -1.96 16 7 C 0.04 0.80 6.28 86.36 0.54 1.34 16 8 N -0.57 -12.84 2.97 -820.54 -2.44 -15.28 16 9 C 0.51 13.85 7.75 87.27 0.68 14.53 16 10 O -0.55 -16.54 15.93 -3.25 -0.05 -16.59 16 11 C 0.51 14.91 7.78 87.27 0.68 15.59 16 12 O -0.53 -17.11 12.68 -3.25 -0.04 -17.15 16 13 N -0.68 -19.33 5.07 -443.72 -2.25 -21.58 16 14 C 0.16 5.28 2.42 45.02 0.11 5.38 16 15 C -0.13 -5.23 5.65 30.67 0.17 -5.06 16 16 C 0.18 8.73 5.27 86.36 0.45 9.19 16 17 N -0.61 -30.36 3.00 -699.09 -2.10 -32.46 16 18 C -0.26 -14.17 9.56 84.04 0.80 -13.37 16 19 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 20 C -0.05 -2.63 5.33 84.86 0.45 -2.18 16 21 N -0.93 -54.96 10.59 21.65 0.23 -54.73 16 22 Si 0.97 44.43 29.56 68.60 2.03 46.46 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 C 0.14 5.67 6.52 86.36 0.56 6.23 16 27 C -0.13 -3.92 5.55 30.67 0.17 -3.75 16 28 C 0.11 1.89 5.31 86.36 0.46 2.35 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.67 6.70 -2.39 -0.02 0.65 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.05 0.98 8.14 -2.38 -0.02 0.97 16 37 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.14 3.66 3.70 -85.70 -0.32 3.35 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.42 10.54 8.09 -92.71 -0.75 9.79 16 41 H 0.08 2.74 7.58 -2.39 -0.02 2.72 16 42 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 44 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 45 H 0.07 3.94 5.89 -2.39 -0.01 3.93 16 46 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 47 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.07 2.53 7.93 -2.39 -0.02 2.52 16 49 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.08 1.69 5.75 -2.39 -0.01 1.67 16 52 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -64.87 397.37 1.49 -63.38 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -0.15 Total: 24.41 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 6.26 Total: 23.54 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -6.56 Total: -124.05 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.09 Total: -33.74 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -64.87 1.49 -63.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588123720.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.151 kcal (2) G-P(sol) polarization free energy of solvation -64.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds