Wall clock time and date at job start Tue Mar 31 2020 19:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 H 1.08996 * 110.54355 * 307.61393 * 3 2 1 5 5 C 1.54889 * 110.48569 * 70.22446 * 3 2 1 6 6 C 1.54893 * 102.75135 * 156.61917 * 5 3 2 7 7 C 1.54272 * 104.19198 * 322.05810 * 6 5 3 8 8 C 1.53875 * 106.59749 * 23.60652 * 7 6 5 9 9 H 1.09003 * 110.02928 * 119.33351 * 8 7 6 10 10 N 1.46496 * 110.03036 * 240.71276 * 8 7 6 11 11 C 1.34781 * 120.00377 * 273.54725 * 10 8 7 12 12 O 1.21352 * 119.99546 * 0.02562 * 11 10 8 13 13 C 1.49450 * 120.00416 * 180.02562 * 11 10 8 14 14 O 1.21346 * 119.99624 * 359.97438 * 13 11 10 15 15 N 1.34776 * 120.00010 * 180.02562 * 13 11 10 16 16 C 1.46498 * 119.99502 * 179.97438 * 15 13 11 17 17 C 1.53046 * 109.45794 * 154.99953 * 16 15 13 18 18 C 1.53198 * 109.31160 * 181.38629 * 17 16 15 19 19 N 1.46926 * 108.76940 * 305.35737 * 18 17 16 20 20 C 1.36934 * 120.62973 * 233.58238 * 19 18 17 21 21 H 1.07995 * 119.99895 * 27.70089 * 20 19 18 22 22 C 1.38811 * 120.00216 * 207.69040 * 20 19 18 23 23 N 1.31622 * 119.99871 * 17.37760 * 22 20 19 24 24 Si 1.86794 * 120.00350 * 197.37156 * 22 20 19 25 25 H 1.48495 * 109.47228 * 60.00095 * 24 22 20 26 26 H 1.48501 * 109.47478 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47023 * 300.00341 * 24 22 20 28 28 C 1.46925 * 118.73711 * 53.61962 * 19 18 17 29 29 C 1.53043 * 109.45935 * 275.06155 * 16 15 13 30 30 H 1.08997 * 109.46655 * 59.99897 * 1 2 3 31 31 H 1.08997 * 109.47099 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47175 * 300.00375 * 1 2 3 33 33 H 1.09001 * 109.47175 * 239.99624 * 2 1 3 34 34 H 1.08997 * 109.46655 * 120.00103 * 2 1 3 35 35 H 1.09005 * 110.75584 * 38.30427 * 5 3 2 36 36 H 1.09007 * 110.75935 * 274.93593 * 5 3 2 37 37 H 1.09001 * 110.48890 * 203.38428 * 6 5 3 38 38 H 1.08995 * 110.48469 * 80.73107 * 6 5 3 39 39 H 1.09007 * 110.03017 * 264.32129 * 7 6 5 40 40 H 1.09004 * 110.02820 * 142.89552 * 7 6 5 41 41 H 0.96998 * 120.00274 * 93.55631 * 10 8 7 42 42 H 0.96991 * 120.00273 * 359.97438 * 15 13 11 43 43 H 1.08997 * 109.45445 * 35.03103 * 16 15 13 44 44 H 1.08996 * 109.50001 * 61.43232 * 17 16 15 45 45 H 1.09001 * 109.49463 * 301.33201 * 17 16 15 46 46 H 1.08996 * 109.58583 * 65.14909 * 18 17 16 47 47 H 1.08996 * 109.57983 * 185.58040 * 18 17 16 48 48 H 0.97003 * 120.00166 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.58999 * 66.17280 * 28 19 18 50 50 H 1.09002 * 109.58512 * 186.59697 * 28 19 18 51 51 H 1.08999 * 109.49230 * 58.66994 * 29 16 15 52 52 H 1.08994 * 109.50032 * 298.56986 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5802 2.0107 -0.8085 5 6 1.7579 2.1172 1.3654 6 6 2.8153 3.2480 1.4129 7 6 4.0703 2.6195 0.7724 8 6 3.5772 1.4716 -0.1258 9 1 3.8644 1.6576 -1.1608 10 7 4.1424 0.1993 0.3304 11 6 5.3538 -0.1960 -0.1085 12 8 5.9767 0.5022 -0.8813 13 6 5.9301 -1.4942 0.3565 14 8 5.3074 -2.1921 1.1295 15 7 7.1417 -1.8892 -0.0821 16 6 7.7068 -3.1615 0.3742 17 6 8.7066 -3.6767 -0.6637 18 6 9.2694 -5.0239 -0.1998 19 7 9.8290 -4.8632 1.1492 20 6 11.1174 -5.2402 1.4195 21 1 11.8588 -5.2307 0.6344 22 6 11.4705 -5.6344 2.7028 23 7 10.5377 -5.9760 3.5664 24 14 13.2693 -5.6803 3.2042 25 1 13.8547 -4.3220 3.0724 26 1 13.3788 -6.1323 4.6144 27 1 14.0045 -6.6237 2.3240 28 6 8.9797 -4.2909 2.2027 29 6 8.4201 -2.9520 1.7119 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9090 1.4124 2.1831 36 1 0.7494 2.5300 1.3913 37 1 3.0178 3.5379 2.4439 38 1 2.4808 4.1077 0.8325 39 1 4.7299 2.2300 1.5479 40 1 4.5959 3.3632 0.1734 41 1 3.6446 -0.3587 0.9483 42 1 7.6396 -1.3312 -0.6997 43 1 6.9059 -3.8901 0.4999 44 1 9.5207 -2.9601 -0.7718 45 1 8.2031 -3.8035 -1.6221 46 1 8.4710 -5.7656 -0.1783 47 1 10.0534 -5.3475 -0.8844 48 1 10.7845 -6.2518 4.4630 49 1 8.1578 -4.9729 2.4202 50 1 9.5726 -4.1310 3.1034 51 1 7.7127 -2.5629 2.4443 52 1 9.2369 -2.2422 1.5815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588126738.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:41 Heat of formation + Delta-G solvation = -68.733455 kcal Electronic energy + Delta-G solvation = -29955.758518 eV Core-core repulsion = 25954.845893 eV Total energy + Delta-G solvation = -4000.912624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.89711 -39.51839 -38.16775 -37.29754 -34.73398 -33.75207 -33.55746 -32.13002 -30.13858 -29.57028 -28.42459 -28.02325 -25.61307 -24.08569 -23.22526 -22.28440 -21.83141 -20.90197 -20.38282 -19.68906 -19.57151 -18.33526 -16.94164 -16.79166 -16.03875 -15.88854 -15.65410 -15.27041 -14.91917 -14.77864 -14.65230 -14.15933 -13.82922 -13.71375 -13.53383 -13.45315 -13.23530 -13.02225 -12.60956 -12.53744 -12.43944 -12.15256 -11.79215 -11.60516 -11.50852 -11.45015 -11.28227 -11.12585 -10.97696 -10.95582 -10.94131 -10.77399 -10.72199 -10.43303 -10.28562 -10.10340 -9.78955 -9.77530 -9.43066 -9.39367 -8.84088 -8.44663 -6.70925 -5.79623 -3.22190 1.46393 2.38447 3.26904 3.38550 3.44611 3.45702 3.67118 4.02530 4.18113 4.34430 4.49085 4.52629 4.77238 4.83999 4.90732 5.05911 5.13153 5.14525 5.24127 5.25473 5.29180 5.37879 5.42605 5.44564 5.51226 5.57255 5.57420 5.69512 5.70938 5.77447 5.79479 5.86783 5.88882 6.00516 6.03027 6.17773 6.19229 6.23918 6.37613 6.53657 6.62620 6.71203 6.75806 6.90470 6.99689 7.33952 7.45821 7.65464 7.77579 7.78754 8.10319 8.43745 9.19705 9.82987 10.39257 11.29062 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.002129 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.118299 B =13147.994773 C =13284.677289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.099 4.099 4 H 0.089 0.911 5 C -0.121 4.121 6 C -0.124 4.124 7 C -0.136 4.136 8 C 0.142 3.858 9 H 0.093 0.907 10 N -0.696 5.696 11 C 0.507 3.493 12 O -0.523 6.523 13 C 0.501 3.499 14 O -0.523 6.523 15 N -0.691 5.691 16 C 0.148 3.852 17 C -0.140 4.140 18 C 0.149 3.851 19 N -0.593 5.593 20 C -0.255 4.255 21 H 0.066 0.934 22 C 0.003 3.997 23 N -0.902 5.902 24 Si 0.903 3.097 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.174 3.826 29 C -0.148 4.148 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.412 0.588 42 H 0.407 0.593 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.021 0.979 47 H 0.060 0.940 48 H 0.255 0.745 49 H 0.022 0.978 50 H 0.091 0.909 51 H 0.054 0.946 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.258 16.891 -7.467 26.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.117 4.117 4 H 0.108 0.892 5 C -0.159 4.159 6 C -0.162 4.162 7 C -0.175 4.175 8 C 0.037 3.963 9 H 0.111 0.889 10 N -0.352 5.352 11 C 0.288 3.712 12 O -0.399 6.399 13 C 0.281 3.719 14 O -0.399 6.399 15 N -0.342 5.342 16 C 0.045 3.955 17 C -0.180 4.180 18 C 0.022 3.978 19 N -0.315 5.315 20 C -0.385 4.385 21 H 0.084 0.916 22 C -0.196 4.196 23 N -0.546 5.546 24 Si 0.733 3.267 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.048 3.952 29 C -0.188 4.188 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.251 0.749 42 H 0.242 0.758 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.039 0.961 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.040 0.960 50 H 0.109 0.891 51 H 0.072 0.928 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.207 16.791 -7.291 26.533 hybrid contribution 0.943 0.051 0.342 1.004 sum -18.264 16.841 -6.949 25.797 Atomic orbital electron populations 1.21765 0.95353 1.01872 1.01808 1.21546 0.96273 0.95547 1.02467 1.22346 0.93368 0.97104 0.98926 0.89239 1.22632 0.99035 0.97580 0.96642 1.22360 0.94962 0.97937 1.00956 1.22619 0.98126 0.97433 0.99312 1.21739 0.92689 0.82503 0.99330 0.88875 1.46039 1.18479 1.22656 1.47984 1.20413 0.82314 0.86918 0.81528 1.90742 1.59638 1.55377 1.34097 1.20032 0.82923 0.86475 0.82456 1.90766 1.60256 1.54873 1.34011 1.46193 1.17654 1.23462 1.46874 1.21235 0.95811 0.83041 0.95365 1.22368 0.97933 1.00974 0.96720 1.20844 0.96381 0.92002 0.88603 1.44108 1.11509 1.71095 1.04814 1.19134 0.85038 1.38862 0.95421 0.91620 1.25053 0.97484 0.98863 0.98227 1.70025 1.31500 1.46986 1.06076 0.86360 0.84986 0.77930 0.77435 1.21030 1.21636 1.20861 1.20769 0.93376 0.88206 0.92898 1.22595 0.98930 1.02119 0.95136 0.92770 0.92574 0.92538 0.91490 0.91605 0.91119 0.91149 0.91392 0.91418 0.90997 0.90879 0.74889 0.75752 0.89592 0.91565 0.92387 0.96089 0.92157 0.93504 0.96032 0.89086 0.92773 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.79 37.16 0.36 -0.50 16 2 C -0.12 -0.80 4.46 -26.73 -0.12 -0.92 16 3 C -0.10 -0.62 2.81 -88.96 -0.25 -0.87 16 4 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 5 C -0.12 -0.70 5.67 -24.74 -0.14 -0.84 16 6 C -0.12 -0.77 6.83 -25.07 -0.17 -0.94 16 7 C -0.14 -1.11 6.59 -25.61 -0.17 -1.27 16 8 C 0.14 1.20 3.10 -66.82 -0.21 0.99 16 9 H 0.09 0.88 7.61 -51.93 -0.39 0.48 16 10 N -0.70 -7.18 4.37 -53.15 -0.23 -7.41 16 11 C 0.51 6.70 7.88 -11.58 -0.09 6.60 16 12 O -0.52 -7.75 16.16 5.50 0.09 -7.66 16 13 C 0.50 7.58 7.85 -11.59 -0.09 7.49 16 14 O -0.52 -9.04 16.14 5.50 0.09 -8.95 16 15 N -0.69 -10.32 5.07 -54.19 -0.27 -10.59 16 16 C 0.15 2.56 2.42 -67.89 -0.16 2.40 16 17 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 18 C 0.15 3.03 6.52 -3.71 -0.02 3.00 16 19 N -0.59 -14.67 2.99 -172.32 -0.52 -15.19 16 20 C -0.26 -6.92 9.59 -15.06 -0.14 -7.07 16 21 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 22 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 23 N -0.90 -26.18 11.19 55.49 0.62 -25.55 16 24 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.17 4.18 5.31 -3.71 -0.02 4.16 16 29 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.30 7.55 -51.93 -0.39 -0.10 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.47 6.40 -51.93 -0.33 0.14 16 35 H 0.07 0.44 7.97 -51.93 -0.41 0.03 16 36 H 0.07 0.34 8.06 -51.93 -0.42 -0.07 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.69 7.92 -51.92 -0.41 0.28 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.41 4.03 5.97 -40.82 -0.24 3.79 16 42 H 0.41 5.49 8.07 -40.82 -0.33 5.16 16 43 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.09 2.45 6.04 -51.93 -0.31 2.13 16 51 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 52 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -30.74 404.87 -9.86 -40.61 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -9.10 Total: 5.39 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -1.61 Total: 6.67 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.40 Total: -58.75 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.18 Total: -16.61 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.74 -9.86 -40.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588126738.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.128 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds