Wall clock time and date at job start Tue Mar 31 2020 19:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47169 * 2 1 4 4 H 1.08996 * 110.54355 * 307.61393 * 3 2 1 5 5 C 1.54889 * 110.48569 * 70.22446 * 3 2 1 6 6 C 1.54893 * 102.75135 * 156.61917 * 5 3 2 7 7 C 1.54272 * 104.19198 * 322.05810 * 6 5 3 8 8 C 1.53875 * 106.59749 * 23.60652 * 7 6 5 9 9 H 1.09003 * 110.02928 * 119.33351 * 8 7 6 10 10 N 1.46496 * 110.03036 * 240.71276 * 8 7 6 11 11 C 1.34781 * 120.00377 * 273.54725 * 10 8 7 12 12 O 1.21352 * 119.99546 * 0.02562 * 11 10 8 13 13 C 1.49450 * 120.00416 * 180.02562 * 11 10 8 14 14 O 1.21346 * 119.99624 * 359.97438 * 13 11 10 15 15 N 1.34776 * 120.00010 * 180.02562 * 13 11 10 16 16 C 1.46498 * 119.99502 * 179.97438 * 15 13 11 17 17 C 1.53046 * 109.45794 * 154.99953 * 16 15 13 18 18 C 1.53198 * 109.31160 * 181.38629 * 17 16 15 19 19 N 1.46926 * 108.76940 * 305.35737 * 18 17 16 20 20 C 1.36934 * 120.62973 * 233.58238 * 19 18 17 21 21 H 1.07995 * 119.99895 * 27.70089 * 20 19 18 22 22 C 1.38811 * 120.00216 * 207.69040 * 20 19 18 23 23 N 1.31622 * 119.99871 * 17.37760 * 22 20 19 24 24 Si 1.86794 * 120.00350 * 197.37156 * 22 20 19 25 25 H 1.48495 * 109.47228 * 60.00095 * 24 22 20 26 26 H 1.48501 * 109.47478 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47023 * 300.00341 * 24 22 20 28 28 C 1.46925 * 118.73711 * 53.61962 * 19 18 17 29 29 C 1.53043 * 109.45935 * 275.06155 * 16 15 13 30 30 H 1.08997 * 109.46655 * 59.99897 * 1 2 3 31 31 H 1.08997 * 109.47099 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47175 * 300.00375 * 1 2 3 33 33 H 1.09001 * 109.47175 * 239.99624 * 2 1 3 34 34 H 1.08997 * 109.46655 * 120.00103 * 2 1 3 35 35 H 1.09005 * 110.75584 * 38.30427 * 5 3 2 36 36 H 1.09007 * 110.75935 * 274.93593 * 5 3 2 37 37 H 1.09001 * 110.48890 * 203.38428 * 6 5 3 38 38 H 1.08995 * 110.48469 * 80.73107 * 6 5 3 39 39 H 1.09007 * 110.03017 * 264.32129 * 7 6 5 40 40 H 1.09004 * 110.02820 * 142.89552 * 7 6 5 41 41 H 0.96998 * 120.00274 * 93.55631 * 10 8 7 42 42 H 0.96991 * 120.00273 * 359.97438 * 15 13 11 43 43 H 1.08997 * 109.45445 * 35.03103 * 16 15 13 44 44 H 1.08996 * 109.50001 * 61.43232 * 17 16 15 45 45 H 1.09001 * 109.49463 * 301.33201 * 17 16 15 46 46 H 1.08996 * 109.58583 * 65.14909 * 18 17 16 47 47 H 1.08996 * 109.57983 * 185.58040 * 18 17 16 48 48 H 0.97003 * 120.00166 * 179.97438 * 23 22 20 49 49 H 1.08997 * 109.58999 * 66.17280 * 28 19 18 50 50 H 1.09002 * 109.58512 * 186.59697 * 28 19 18 51 51 H 1.08999 * 109.49230 * 58.66994 * 29 16 15 52 52 H 1.08994 * 109.50032 * 298.56986 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5802 2.0107 -0.8085 5 6 1.7579 2.1172 1.3654 6 6 2.8153 3.2480 1.4129 7 6 4.0703 2.6195 0.7724 8 6 3.5772 1.4716 -0.1258 9 1 3.8644 1.6576 -1.1608 10 7 4.1424 0.1993 0.3304 11 6 5.3538 -0.1960 -0.1085 12 8 5.9767 0.5022 -0.8813 13 6 5.9301 -1.4942 0.3565 14 8 5.3074 -2.1921 1.1295 15 7 7.1417 -1.8892 -0.0821 16 6 7.7068 -3.1615 0.3742 17 6 8.7066 -3.6767 -0.6637 18 6 9.2694 -5.0239 -0.1998 19 7 9.8290 -4.8632 1.1492 20 6 11.1174 -5.2402 1.4195 21 1 11.8588 -5.2307 0.6344 22 6 11.4705 -5.6344 2.7028 23 7 10.5377 -5.9760 3.5664 24 14 13.2693 -5.6803 3.2042 25 1 13.8547 -4.3220 3.0724 26 1 13.3788 -6.1323 4.6144 27 1 14.0045 -6.6237 2.3240 28 6 8.9797 -4.2909 2.2027 29 6 8.4201 -2.9520 1.7119 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.9090 1.4124 2.1831 36 1 0.7494 2.5300 1.3913 37 1 3.0178 3.5379 2.4439 38 1 2.4808 4.1077 0.8325 39 1 4.7299 2.2300 1.5479 40 1 4.5959 3.3632 0.1734 41 1 3.6446 -0.3587 0.9483 42 1 7.6396 -1.3312 -0.6997 43 1 6.9059 -3.8901 0.4999 44 1 9.5207 -2.9601 -0.7718 45 1 8.2031 -3.8035 -1.6221 46 1 8.4710 -5.7656 -0.1783 47 1 10.0534 -5.3475 -0.8844 48 1 10.7845 -6.2518 4.4630 49 1 8.1578 -4.9729 2.4202 50 1 9.5726 -4.1310 3.1034 51 1 7.7127 -2.5629 2.4443 52 1 9.2369 -2.2422 1.5815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588126738.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:40 Heat of formation + Delta-G solvation = -87.718724 kcal Electronic energy + Delta-G solvation = -29956.581781 eV Core-core repulsion = 25954.845893 eV Total energy + Delta-G solvation = -4001.735887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.95352 -40.54576 -39.24953 -38.75685 -36.24614 -34.73406 -34.10766 -33.88467 -31.84037 -31.30237 -29.17703 -28.54936 -27.26216 -25.50082 -23.95100 -23.78156 -23.37980 -21.59871 -21.44355 -21.11801 -20.38967 -19.58088 -18.66978 -18.00563 -17.17960 -16.89551 -16.74131 -16.59392 -16.12790 -15.70984 -15.51405 -15.39824 -15.36739 -15.09063 -14.87471 -14.74923 -14.24171 -14.11780 -13.96542 -13.87811 -13.23211 -13.10953 -13.03063 -12.86475 -12.72041 -12.63084 -12.57202 -12.27585 -12.15675 -12.09579 -11.96401 -11.86531 -11.84216 -11.58912 -11.53252 -11.46087 -11.41700 -11.29639 -10.69419 -10.58583 -10.29775 -10.17814 -8.72436 -7.88021 -5.33349 0.31678 1.29229 1.47788 1.50397 1.56943 2.11463 2.51618 2.60193 3.27667 3.35716 3.49190 3.61588 3.66045 3.80472 3.81291 4.00667 4.21866 4.27242 4.30102 4.37386 4.44220 4.49549 4.53642 4.62172 4.63608 4.71951 4.73094 4.76528 4.80711 4.92324 4.93970 4.97859 5.02297 5.05242 5.09909 5.17041 5.22206 5.24864 5.28533 5.29518 5.32454 5.40993 5.43325 5.44905 5.51327 5.63503 5.68977 5.93385 6.34037 6.38275 6.72451 6.93163 7.13194 7.84007 8.36035 9.19002 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.002129 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.118299 B =13147.994773 C =13284.677289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.090 4.090 4 H 0.104 0.896 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.137 4.137 8 C 0.137 3.863 9 H 0.086 0.914 10 N -0.682 5.682 11 C 0.513 3.487 12 O -0.540 6.540 13 C 0.501 3.499 14 O -0.546 6.546 15 N -0.682 5.682 16 C 0.159 3.841 17 C -0.125 4.125 18 C 0.143 3.857 19 N -0.610 5.610 20 C -0.262 4.262 21 H 0.072 0.928 22 C -0.053 4.053 23 N -0.937 5.937 24 Si 0.968 3.032 25 H -0.278 1.278 26 H -0.297 1.297 27 H -0.273 1.273 28 C 0.183 3.817 29 C -0.132 4.132 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.416 0.584 42 H 0.418 0.582 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.017 0.983 47 H 0.068 0.932 48 H 0.250 0.750 49 H -0.004 1.004 50 H 0.057 0.943 51 H 0.051 0.949 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.097 18.684 -8.990 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.108 4.108 4 H 0.123 0.877 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.175 4.175 8 C 0.034 3.966 9 H 0.104 0.896 10 N -0.336 5.336 11 C 0.293 3.707 12 O -0.417 6.417 13 C 0.282 3.718 14 O -0.424 6.424 15 N -0.334 5.334 16 C 0.055 3.945 17 C -0.164 4.164 18 C 0.017 3.983 19 N -0.334 5.334 20 C -0.392 4.392 21 H 0.090 0.910 22 C -0.248 4.248 23 N -0.583 5.583 24 Si 0.796 3.204 25 H -0.204 1.204 26 H -0.223 1.223 27 H -0.199 1.199 28 C 0.056 3.944 29 C -0.173 4.173 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.255 0.745 42 H 0.255 0.745 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.111 0.889 46 H 0.035 0.965 47 H 0.087 0.913 48 H 0.059 0.941 49 H 0.014 0.986 50 H 0.075 0.925 51 H 0.070 0.930 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.072 18.616 -8.854 28.772 hybrid contribution 1.134 -0.516 0.792 1.476 sum -18.938 18.100 -8.062 27.409 Atomic orbital electron populations 1.21743 0.94362 1.01901 1.02526 1.21532 0.97141 0.95591 1.01603 1.22331 0.91463 0.97139 0.99911 0.87736 1.22629 0.99785 0.97243 0.95909 1.22349 0.93939 0.98352 1.01073 1.22604 0.98873 0.97258 0.98786 1.21954 0.94243 0.81519 0.98933 0.89579 1.46082 1.17339 1.23158 1.47036 1.20005 0.83026 0.86021 0.81650 1.90740 1.60279 1.55581 1.35114 1.20404 0.82660 0.86943 0.81794 1.90761 1.60870 1.55753 1.35045 1.45949 1.17770 1.22741 1.46914 1.20901 0.95380 0.83863 0.94316 1.22183 0.97954 0.98644 0.97638 1.21033 0.96524 0.94178 0.86582 1.44360 1.11196 1.71419 1.06408 1.19514 0.86341 1.37728 0.95649 0.90990 1.25836 1.01309 0.99267 0.98435 1.70189 1.33375 1.48611 1.06100 0.85331 0.80388 0.78074 0.76603 1.20428 1.22286 1.19883 1.20485 0.91977 0.89780 0.92154 1.22342 0.98930 0.99345 0.96651 0.92037 0.92959 0.91802 0.92539 0.92311 0.91710 0.89510 0.91233 0.90080 0.92710 0.90944 0.74483 0.74484 0.90952 0.90865 0.88923 0.96461 0.91342 0.94122 0.98624 0.92467 0.92992 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.79 71.98 0.70 -0.71 16 2 C -0.12 -1.44 4.46 30.59 0.14 -1.30 16 3 C -0.09 -0.95 2.81 -9.72 -0.03 -0.98 16 4 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 5 C -0.12 -1.09 5.67 31.89 0.18 -0.91 16 6 C -0.12 -1.23 6.83 31.67 0.22 -1.01 16 7 C -0.14 -2.05 6.59 31.32 0.21 -1.85 16 8 C 0.14 2.14 3.10 45.72 0.14 2.28 16 9 H 0.09 1.51 7.61 -2.39 -0.02 1.50 16 10 N -0.68 -13.50 4.37 -440.44 -1.92 -15.42 16 11 C 0.51 13.07 7.88 87.27 0.69 13.76 16 12 O -0.54 -15.36 16.16 -3.25 -0.05 -15.41 16 13 C 0.50 14.74 7.85 87.27 0.69 15.43 16 14 O -0.55 -18.76 16.14 -3.23 -0.05 -18.81 16 15 N -0.68 -19.40 5.07 -443.74 -2.25 -21.65 16 16 C 0.16 5.35 2.42 45.02 0.11 5.46 16 17 C -0.12 -3.88 5.55 30.68 0.17 -3.71 16 18 C 0.14 5.67 6.52 86.36 0.56 6.23 16 19 N -0.61 -30.49 2.99 -699.10 -2.09 -32.58 16 20 C -0.26 -14.30 9.59 84.03 0.81 -13.49 16 21 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 22 C -0.05 -2.98 4.91 84.86 0.42 -2.57 16 23 N -0.94 -56.13 11.19 21.65 0.24 -55.89 16 24 Si 0.97 44.93 29.59 68.60 2.03 46.96 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 28 C 0.18 9.07 5.31 86.36 0.46 9.53 16 29 C -0.13 -5.26 5.65 30.67 0.17 -5.09 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.52 7.55 -2.39 -0.02 0.50 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.78 6.40 -2.39 -0.02 0.76 16 35 H 0.06 0.70 7.97 -2.38 -0.02 0.68 16 36 H 0.09 0.57 8.06 -2.38 -0.02 0.55 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.05 1.02 7.92 -2.38 -0.02 1.00 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.42 7.85 5.97 -92.71 -0.55 7.30 16 42 H 0.42 10.37 8.07 -92.71 -0.75 9.62 16 43 H 0.07 2.69 7.58 -2.39 -0.02 2.67 16 44 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 48 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 49 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 50 H 0.06 3.22 6.04 -2.39 -0.01 3.20 16 51 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 52 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -67.21 404.87 1.14 -66.07 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -0.39 Total: 25.66 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 5.63 Total: 21.07 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -6.03 Total: -125.54 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.10 Total: -34.22 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -67.21 1.14 -66.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588126738.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.651 kcal (2) G-P(sol) polarization free energy of solvation -67.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds