Wall clock time and date at job start Tue Mar 31 2020 19:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47338 * 2 1 4 4 H 1.08997 * 110.05645 * 306.41437 * 3 2 1 5 5 C 1.54263 * 110.03105 * 67.83562 * 3 2 1 6 6 C 1.54892 * 104.19878 * 142.89816 * 5 3 2 7 7 C 1.54890 * 102.74272 * 322.05538 * 6 5 3 8 8 C 1.53872 * 110.03414 * 184.99796 * 3 2 1 9 9 H 1.09005 * 110.03075 * 0.02562 * 8 3 2 10 10 N 1.46499 * 110.03147 * 121.37835 * 8 3 2 11 11 C 1.34778 * 120.00275 * 204.30820 * 10 8 3 12 12 O 1.21353 * 120.00124 * 0.02562 * 11 10 8 13 13 C 1.49453 * 120.00246 * 180.02562 * 11 10 8 14 14 O 1.21353 * 119.99629 * 0.02562 * 13 11 10 15 15 N 1.34771 * 120.00233 * 180.02562 * 13 11 10 16 16 C 1.46497 * 119.99870 * 179.97438 * 15 13 11 17 17 C 1.53040 * 109.46160 * 275.02309 * 16 15 13 18 18 C 1.53191 * 109.31363 * 178.60159 * 17 16 15 19 19 N 1.46924 * 108.76337 * 54.66180 * 18 17 16 20 20 C 1.36936 * 120.63362 * 126.40453 * 19 18 17 21 21 H 1.08002 * 120.00204 * 331.82040 * 20 19 18 22 22 C 1.38815 * 120.00314 * 151.81804 * 20 19 18 23 23 N 1.31614 * 119.99828 * 343.08478 * 22 20 19 24 24 Si 1.86797 * 120.00022 * 163.07837 * 22 20 19 25 25 H 1.48501 * 109.46986 * 60.00595 * 24 22 20 26 26 H 1.48502 * 109.47128 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47388 * 300.00278 * 24 22 20 28 28 C 1.46927 * 118.73741 * 306.37897 * 19 18 17 29 29 C 1.53048 * 109.45842 * 154.97283 * 16 15 13 30 30 H 1.08995 * 109.47464 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47142 * 300.00060 * 1 2 3 32 32 H 1.09001 * 109.47148 * 59.99568 * 1 2 3 33 33 H 1.09005 * 109.47142 * 239.99940 * 2 1 3 34 34 H 1.09001 * 109.47148 * 120.00432 * 2 1 3 35 35 H 1.09004 * 110.48249 * 261.57354 * 5 3 2 36 36 H 1.09001 * 110.48992 * 24.07891 * 5 3 2 37 37 H 1.08992 * 110.75865 * 80.36767 * 6 5 3 38 38 H 1.09003 * 110.75611 * 203.74469 * 6 5 3 39 39 H 1.09006 * 110.48539 * 279.26431 * 7 6 5 40 40 H 1.08999 * 110.48296 * 156.62655 * 7 6 5 41 41 H 0.97007 * 120.00006 * 24.31941 * 10 8 3 42 42 H 0.96998 * 119.99812 * 0.02562 * 15 13 11 43 43 H 1.08992 * 109.46210 * 35.00281 * 16 15 13 44 44 H 1.09005 * 109.49813 * 298.57366 * 17 16 15 45 45 H 1.09000 * 109.49519 * 58.66328 * 17 16 15 46 46 H 1.08995 * 109.60124 * 294.86972 * 18 17 16 47 47 H 1.09001 * 109.70019 * 174.50560 * 18 17 16 48 48 H 0.97008 * 120.00428 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.58681 * 293.82126 * 28 19 18 50 50 H 1.09003 * 109.70224 * 173.46538 * 28 19 18 51 51 H 1.08997 * 109.49501 * 301.33402 * 29 16 15 52 52 H 1.09003 * 109.49516 * 61.43533 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5916 1.9975 -0.8240 5 6 1.7006 2.1229 1.3422 6 6 2.9290 3.0201 1.6346 7 6 4.1124 2.1495 1.1440 8 6 3.5734 1.4593 -0.1259 9 1 3.9543 0.4398 -0.1875 10 7 3.9709 2.2153 -1.3162 11 6 5.1598 1.9726 -1.9028 12 8 5.9009 1.1276 -1.4453 13 6 5.5655 2.7442 -3.1168 14 8 4.8246 3.5896 -3.5740 15 7 6.7541 2.5012 -3.7037 16 6 7.1515 3.2572 -4.8939 17 6 6.5648 2.5910 -6.1405 18 6 6.9531 3.4037 -7.3797 19 7 8.4144 3.5539 -7.4074 20 6 9.1322 3.1919 -8.5159 21 1 8.7633 2.4138 -9.1677 22 6 10.3340 3.8249 -8.8020 23 7 10.6265 4.9722 -8.2272 24 14 11.5360 3.0485 -10.0026 25 1 10.8845 2.8996 -11.3287 26 1 12.7343 3.9157 -10.1339 27 1 11.9451 1.7126 -9.4993 28 6 9.0909 4.1007 -6.2232 29 6 8.6783 3.2804 -4.9970 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.7999 2.7291 1.2455 36 1 1.5749 1.3770 2.1271 37 1 2.8722 3.9494 1.0680 38 1 3.0145 3.2219 2.7024 39 1 4.3786 1.4080 1.8974 40 1 4.9718 2.7751 0.9028 41 1 3.3784 2.8907 -1.6821 42 1 7.3462 1.8253 -3.3384 43 1 6.7772 4.2780 -4.8175 44 1 6.9582 1.5784 -6.2312 45 1 5.4787 2.5535 -6.0559 46 1 6.4854 4.3871 -7.3333 47 1 6.6222 2.8837 -8.2787 48 1 11.4665 5.4145 -8.4267 49 1 8.7976 5.1410 -6.0826 50 1 10.1711 4.0404 -6.3565 51 1 9.0967 3.7338 -4.0984 52 1 9.0516 2.2613 -5.0986 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588126739.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:45 Heat of formation + Delta-G solvation = -74.192470 kcal Electronic energy + Delta-G solvation = -29660.577049 eV Core-core repulsion = 25659.427704 eV Total energy + Delta-G solvation = -4001.149345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.85698 -39.50591 -38.22035 -37.30354 -34.82883 -34.07115 -33.19846 -32.13311 -30.20529 -29.52097 -28.48479 -28.03258 -25.66566 -24.23225 -22.86641 -22.29059 -21.85779 -21.00912 -20.45673 -20.00331 -19.36914 -18.21669 -17.04993 -16.75121 -16.23265 -15.93877 -15.58208 -15.26056 -15.06293 -14.79051 -14.49758 -14.04851 -13.95592 -13.65716 -13.61948 -13.50658 -13.22008 -12.99954 -12.65205 -12.43087 -12.36531 -12.19677 -11.82392 -11.69299 -11.49664 -11.43144 -11.33596 -11.15128 -11.12093 -11.00385 -10.87374 -10.86454 -10.72467 -10.52822 -10.32734 -10.07805 -9.86117 -9.69563 -9.44140 -9.39306 -8.86515 -8.47561 -6.70729 -5.80917 -3.23376 1.43955 2.36057 3.24271 3.38209 3.44014 3.45288 3.65876 4.01671 4.16045 4.34874 4.48666 4.51276 4.72152 4.79512 4.88422 5.01668 5.11711 5.21383 5.22426 5.26308 5.28387 5.34808 5.37160 5.45886 5.49999 5.52222 5.58265 5.61886 5.70085 5.72114 5.80148 5.81702 5.88573 5.96610 6.02943 6.16378 6.18183 6.26451 6.47006 6.48964 6.54000 6.71779 6.77342 6.93457 6.98149 7.28862 7.42598 7.60428 7.75484 7.78518 8.08060 8.43038 9.19061 9.82080 10.38896 11.28055 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028934 B = 0.001962 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.489716 B =14264.234903 C =14567.803170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.100 4.100 4 H 0.082 0.918 5 C -0.118 4.118 6 C -0.127 4.127 7 C -0.134 4.134 8 C 0.140 3.860 9 H 0.095 0.905 10 N -0.697 5.697 11 C 0.508 3.492 12 O -0.522 6.522 13 C 0.502 3.498 14 O -0.525 6.525 15 N -0.690 5.690 16 C 0.148 3.852 17 C -0.140 4.140 18 C 0.148 3.852 19 N -0.592 5.592 20 C -0.253 4.253 21 H 0.066 0.934 22 C 0.002 3.998 23 N -0.903 5.903 24 Si 0.904 3.096 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.175 3.825 29 C -0.148 4.148 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.411 0.589 42 H 0.408 0.592 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.255 0.745 49 H 0.022 0.978 50 H 0.093 0.907 51 H 0.056 0.944 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.736 -6.986 20.829 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.118 4.118 4 H 0.100 0.900 5 C -0.155 4.155 6 C -0.164 4.164 7 C -0.173 4.173 8 C 0.036 3.964 9 H 0.113 0.887 10 N -0.350 5.350 11 C 0.289 3.711 12 O -0.397 6.397 13 C 0.281 3.719 14 O -0.402 6.402 15 N -0.341 5.341 16 C 0.046 3.954 17 C -0.180 4.180 18 C 0.021 3.979 19 N -0.315 5.315 20 C -0.383 4.383 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.548 5.548 24 Si 0.734 3.266 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.210 1.210 28 C 0.048 3.952 29 C -0.188 4.188 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.248 0.752 42 H 0.244 0.756 43 H 0.104 0.896 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.039 0.961 47 H 0.076 0.924 48 H 0.065 0.935 49 H 0.040 0.960 50 H 0.111 0.889 51 H 0.075 0.925 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.563 -6.878 20.764 28.052 hybrid contribution 0.665 -0.353 -0.584 0.953 sum -16.898 -7.231 20.180 27.296 Atomic orbital electron populations 1.21780 0.95478 1.01736 1.01970 1.21625 0.96201 0.95230 1.02406 1.22130 0.93451 0.97281 0.98986 0.89984 1.22457 0.98154 0.98641 0.96288 1.22538 0.94425 0.98324 1.01160 1.22783 0.98375 0.99392 0.96712 1.21815 0.94168 0.96435 0.83962 0.88684 1.45955 1.19077 1.40802 1.29175 1.20408 0.82421 0.83578 0.84731 1.90751 1.51620 1.32925 1.64411 1.20043 0.83234 0.84004 0.84570 1.90758 1.51706 1.33196 1.64507 1.46225 1.18113 1.40263 1.29482 1.21239 0.96225 0.95540 0.82437 1.22403 0.99218 1.00431 0.95978 1.20867 0.86195 0.96321 0.94500 1.44088 0.99915 1.74691 1.12818 1.19144 1.02733 1.13680 1.02743 0.91657 1.25061 1.00409 0.95265 0.98908 1.70010 1.24097 1.14365 1.46279 0.86351 0.80717 0.78613 0.80968 1.20869 1.21640 1.21024 1.20751 0.99517 0.92720 0.82209 1.22574 0.92363 1.02608 1.01231 0.92692 0.92544 0.92654 0.91721 0.91556 0.91326 0.91101 0.91313 0.91298 0.90511 0.91030 0.75199 0.75641 0.89579 0.92040 0.92650 0.96093 0.92397 0.93515 0.95997 0.88879 0.92491 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.77 37.15 0.36 -0.43 16 2 C -0.12 -0.69 5.06 -26.74 -0.14 -0.83 16 3 C -0.10 -0.62 2.70 -89.51 -0.24 -0.86 16 4 H 0.08 0.52 7.61 -51.93 -0.40 0.13 16 5 C -0.12 -0.63 5.53 -25.07 -0.14 -0.77 16 6 C -0.13 -0.78 6.91 -24.74 -0.17 -0.95 16 7 C -0.13 -1.04 6.54 -25.08 -0.16 -1.20 16 8 C 0.14 1.17 2.89 -66.82 -0.19 0.98 16 9 H 0.10 0.91 7.12 -51.93 -0.37 0.54 16 10 N -0.70 -7.00 5.03 -53.15 -0.27 -7.27 16 11 C 0.51 6.61 7.88 -11.58 -0.09 6.52 16 12 O -0.52 -7.71 16.14 5.49 0.09 -7.62 16 13 C 0.50 7.45 7.85 -11.59 -0.09 7.36 16 14 O -0.53 -8.83 16.14 5.49 0.09 -8.74 16 15 N -0.69 -10.30 5.07 -54.20 -0.27 -10.57 16 16 C 0.15 2.56 2.42 -67.89 -0.16 2.40 16 17 C -0.14 -2.53 5.65 -26.61 -0.15 -2.68 16 18 C 0.15 3.14 6.52 -3.71 -0.02 3.11 16 19 N -0.59 -14.66 2.99 -172.32 -0.52 -15.18 16 20 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 21 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 22 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 23 N -0.90 -25.90 11.19 55.49 0.62 -25.28 16 24 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 28 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 29 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.26 7.51 -51.93 -0.39 -0.13 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.37 8.00 -51.93 -0.42 -0.05 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.35 7.76 -51.93 -0.40 -0.06 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 41 H 0.41 3.79 7.78 -40.82 -0.32 3.47 16 42 H 0.41 5.59 8.07 -40.82 -0.33 5.26 16 43 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.20 7.93 -51.93 -0.41 0.78 16 48 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.09 2.41 6.07 -51.93 -0.31 2.09 16 51 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 408.04 15.07 6.15 6.15 Total: -1.00 -30.46 408.04 -9.94 -40.40 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -9.20 Total: 4.85 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -1.60 Total: 6.77 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.44 Total: -58.30 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.18 Total: -16.36 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.46 -9.94 -40.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588126739.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.788 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds