Wall clock time and date at job start Tue Mar 31 2020 19:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47278 * 2 1 4 4 H 1.08999 * 110.53634 * 52.38411 * 3 2 1 5 5 C 1.54886 * 110.48166 * 289.77603 * 3 2 1 6 6 C 1.54896 * 102.74377 * 203.37750 * 5 3 2 7 7 C 1.54373 * 104.21727 * 37.92429 * 6 5 3 8 8 C 1.53876 * 106.54223 * 336.42626 * 7 6 5 9 9 H 1.09000 * 110.02774 * 240.65018 * 8 7 6 10 10 N 1.46502 * 110.03069 * 119.27499 * 8 7 6 11 11 C 1.34771 * 120.00308 * 87.09287 * 10 8 7 12 12 O 1.21345 * 120.00258 * 359.97438 * 11 10 8 13 13 C 1.49451 * 119.99790 * 180.02562 * 11 10 8 14 14 O 1.21343 * 120.00406 * 359.97438 * 13 11 10 15 15 N 1.34780 * 119.99742 * 180.27048 * 13 11 10 16 16 C 1.46499 * 119.99870 * 179.72162 * 15 13 11 17 17 C 1.53044 * 109.46121 * 275.06786 * 16 15 13 18 18 C 1.53194 * 109.31303 * 178.61558 * 17 16 15 19 19 N 1.46920 * 108.77825 * 54.63839 * 18 17 16 20 20 C 1.36931 * 120.63358 * 126.36552 * 19 18 17 21 21 H 1.07997 * 120.00484 * 331.86802 * 20 19 18 22 22 C 1.38818 * 119.99692 * 151.86191 * 20 19 18 23 23 N 1.31619 * 120.00254 * 343.06953 * 22 20 19 24 24 Si 1.86804 * 119.99636 * 163.06618 * 22 20 19 25 25 H 1.48500 * 109.47055 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47035 * 120.00279 * 24 22 20 27 27 H 1.48509 * 109.46929 * 240.00083 * 24 22 20 28 28 C 1.46931 * 118.73467 * 306.39039 * 19 18 17 29 29 C 1.53039 * 109.46072 * 155.00200 * 16 15 13 30 30 H 1.09004 * 109.47489 * 300.00003 * 1 2 3 31 31 H 1.08998 * 109.47048 * 60.00291 * 1 2 3 32 32 H 1.09003 * 109.47272 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47414 * 239.99599 * 2 1 3 34 34 H 1.09006 * 109.46708 * 119.99618 * 2 1 3 35 35 H 1.08998 * 110.75662 * 321.69036 * 5 3 2 36 36 H 1.09000 * 110.75812 * 85.06326 * 5 3 2 37 37 H 1.09005 * 110.48200 * 156.62042 * 6 5 3 38 38 H 1.08998 * 110.48713 * 279.26298 * 6 5 3 39 39 H 1.09000 * 110.07272 * 217.15193 * 7 6 5 40 40 H 1.08999 * 110.04638 * 95.68494 * 7 6 5 41 41 H 0.97007 * 119.99613 * 267.08465 * 10 8 7 42 42 H 0.97000 * 120.00205 * 359.72830 * 15 13 11 43 43 H 1.08996 * 109.46159 * 35.02340 * 16 15 13 44 44 H 1.09002 * 109.49757 * 298.57090 * 17 16 15 45 45 H 1.09002 * 109.49698 * 58.66505 * 17 16 15 46 46 H 1.09002 * 109.58448 * 294.84725 * 18 17 16 47 47 H 1.09002 * 109.70113 * 174.49357 * 18 17 16 48 48 H 0.96996 * 119.99904 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.58634 * 293.82148 * 28 19 18 50 50 H 1.09005 * 109.70238 * 173.46159 * 28 19 18 51 51 H 1.09003 * 109.49494 * 301.33735 * 29 16 15 52 52 H 1.09003 * 109.49569 * 61.40375 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0107 0.8085 5 6 1.7578 2.1171 -1.3654 6 6 2.8153 3.2480 -1.4128 7 6 4.0712 2.6198 -0.7715 8 6 3.5772 1.4717 0.1260 9 1 3.8635 1.6573 1.1612 10 7 4.1424 0.1994 -0.3301 11 6 5.3476 -0.2024 0.1196 12 8 5.9649 0.4898 0.9021 13 6 5.9244 -1.5001 -0.3462 14 8 5.3074 -2.1922 -1.1290 15 7 7.1272 -1.9045 0.1078 16 6 7.6899 -3.1794 -0.3441 17 6 7.1424 -4.3147 0.5241 18 6 7.7058 -5.6497 0.0269 19 7 9.1723 -5.5637 0.0005 20 6 9.9377 -6.4978 0.6459 21 1 9.5480 -7.0093 1.5136 22 6 11.2146 -6.7875 0.1848 23 7 11.5707 -6.4346 -1.0322 24 14 12.4276 -7.6781 1.2916 25 1 11.7869 -7.9615 2.6010 26 1 12.8353 -8.9550 0.6527 27 1 13.6249 -6.8250 1.5013 28 6 9.8019 -4.4559 -0.7312 29 6 9.2150 -3.1343 -0.2255 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 1.9090 1.4124 -2.1830 36 1 0.7494 2.5300 -1.3912 37 1 3.0177 3.5379 -2.4439 38 1 2.4807 4.1078 -0.8324 39 1 4.5965 3.3630 -0.1717 40 1 4.7314 2.2304 -1.5465 41 1 3.6491 -0.3539 -0.9559 42 1 7.6203 -1.3515 0.7339 43 1 7.4114 -3.3511 -1.3838 44 1 7.4415 -4.1569 1.5604 45 1 6.0546 -4.3315 0.4575 46 1 7.3335 -5.8520 -0.9774 47 1 7.3988 -6.4512 0.6988 48 1 12.4628 -6.6374 -1.3545 49 1 9.6005 -4.5610 -1.7973 50 1 10.8783 -4.4671 -0.5597 51 1 9.6023 -2.3109 -0.8256 52 1 9.4945 -2.9872 0.8178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588126740.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:47 Heat of formation + Delta-G solvation = -87.825782 kcal Electronic energy + Delta-G solvation = -29909.578317 eV Core-core repulsion = 25907.837787 eV Total energy + Delta-G solvation = -4001.740530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.95070 -40.54201 -39.24766 -38.75444 -36.23977 -34.72883 -34.09816 -33.89435 -31.86884 -31.26911 -29.17379 -28.54274 -27.26633 -25.50313 -23.96465 -23.76899 -23.37414 -21.57557 -21.44376 -21.11682 -20.39204 -19.62327 -18.62315 -18.01428 -17.10421 -16.90734 -16.79455 -16.61386 -16.11199 -15.70112 -15.46636 -15.40411 -15.32865 -15.22246 -14.87947 -14.66860 -14.26077 -14.13503 -13.96012 -13.87676 -13.24642 -13.09862 -13.03966 -12.86259 -12.71611 -12.63843 -12.51577 -12.28094 -12.21806 -12.02291 -11.95975 -11.89134 -11.83999 -11.60668 -11.52775 -11.45421 -11.38956 -11.29196 -10.69307 -10.57605 -10.29973 -10.18817 -8.71802 -7.88713 -5.34059 0.31996 1.29362 1.47352 1.49519 1.59889 2.11665 2.51395 2.60219 3.27310 3.36036 3.49560 3.62256 3.65338 3.81064 3.82736 3.97697 4.22513 4.27095 4.30472 4.37784 4.42790 4.49943 4.54153 4.62262 4.62776 4.71637 4.73778 4.76966 4.81434 4.92642 4.94187 4.94772 5.00811 5.05925 5.11575 5.17556 5.22842 5.25415 5.27073 5.29466 5.32151 5.41328 5.43804 5.45501 5.51812 5.64154 5.69114 5.94029 6.34242 6.38806 6.72206 6.92907 7.13840 7.83231 8.35649 9.18624 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.002071 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.433915 B =13514.191612 C =13983.654730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.090 4.090 4 H 0.103 0.897 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.136 4.136 8 C 0.137 3.863 9 H 0.084 0.916 10 N -0.681 5.681 11 C 0.512 3.488 12 O -0.541 6.541 13 C 0.503 3.497 14 O -0.545 6.545 15 N -0.683 5.683 16 C 0.160 3.840 17 C -0.126 4.126 18 C 0.146 3.854 19 N -0.610 5.610 20 C -0.261 4.261 21 H 0.068 0.932 22 C -0.050 4.050 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.267 1.267 26 H -0.293 1.293 27 H -0.289 1.289 28 C 0.179 3.821 29 C -0.132 4.132 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.416 0.584 42 H 0.417 0.583 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.014 0.986 47 H 0.060 0.940 48 H 0.251 0.749 49 H 0.000 1.000 50 H 0.063 0.937 51 H 0.077 0.923 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.724 20.696 1.328 30.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.109 4.109 4 H 0.121 0.879 5 C -0.155 4.155 6 C -0.157 4.157 7 C -0.174 4.174 8 C 0.033 3.967 9 H 0.102 0.898 10 N -0.335 5.335 11 C 0.292 3.708 12 O -0.418 6.418 13 C 0.284 3.716 14 O -0.422 6.422 15 N -0.335 5.335 16 C 0.056 3.944 17 C -0.166 4.166 18 C 0.020 3.980 19 N -0.333 5.333 20 C -0.392 4.392 21 H 0.085 0.915 22 C -0.245 4.245 23 N -0.581 5.581 24 Si 0.796 3.204 25 H -0.191 1.191 26 H -0.221 1.221 27 H -0.215 1.215 28 C 0.053 3.947 29 C -0.171 4.171 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.256 0.744 42 H 0.254 0.746 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.032 0.968 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.018 0.982 50 H 0.082 0.918 51 H 0.096 0.904 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.592 20.660 1.263 29.910 hybrid contribution 1.173 -0.853 0.195 1.463 sum -20.419 19.807 1.458 28.485 Atomic orbital electron populations 1.21744 0.94394 1.01896 1.02512 1.21529 0.97111 0.95589 1.01606 1.22333 0.91488 0.97135 0.99959 0.87925 1.22623 0.99771 0.97256 0.95847 1.22367 0.93914 0.98309 1.01113 1.22613 0.98882 0.97164 0.98785 1.21950 0.94234 0.81610 0.98925 0.89800 1.46059 1.17878 1.23198 1.46377 1.20024 0.83021 0.85988 0.81748 1.90745 1.60410 1.55918 1.34770 1.20361 0.82604 0.86812 0.81831 1.90747 1.60195 1.56389 1.34913 1.45981 1.18823 1.22319 1.46353 1.20887 0.93442 0.81700 0.98385 1.22210 0.99599 0.95177 0.99600 1.20965 0.83900 0.95458 0.97725 1.44358 1.00737 1.27141 1.61104 1.19534 0.97144 1.16337 1.06142 0.91475 1.25810 1.01298 1.00762 0.96680 1.70176 1.19590 1.52141 1.16160 0.85208 0.78950 0.77469 0.78802 1.19131 1.22058 1.21543 1.20557 0.97559 0.84371 0.92205 1.22301 0.93051 0.99393 1.02382 0.92165 0.91703 0.92964 0.92135 0.92720 0.91529 0.89560 0.91077 0.90214 0.91026 0.92469 0.74421 0.74614 0.90956 0.91667 0.91493 0.96839 0.92176 0.94006 0.98206 0.91834 0.90443 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.79 71.98 0.70 -0.68 16 2 C -0.12 -1.40 4.46 30.59 0.14 -1.26 16 3 C -0.09 -0.92 2.81 -9.72 -0.03 -0.95 16 4 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 5 C -0.12 -1.00 5.67 31.89 0.18 -0.82 16 6 C -0.12 -1.13 6.83 31.71 0.22 -0.91 16 7 C -0.14 -1.93 6.60 31.36 0.21 -1.72 16 8 C 0.14 2.08 3.10 45.71 0.14 2.22 16 9 H 0.08 1.48 7.59 -2.39 -0.02 1.47 16 10 N -0.68 -12.98 4.35 -440.45 -1.92 -14.89 16 11 C 0.51 12.79 7.88 87.27 0.69 13.48 16 12 O -0.54 -15.41 16.14 -3.23 -0.05 -15.46 16 13 C 0.50 14.36 7.85 87.27 0.69 15.04 16 14 O -0.54 -17.74 16.14 -3.22 -0.05 -17.80 16 15 N -0.68 -19.43 5.07 -443.74 -2.25 -21.68 16 16 C 0.16 5.37 2.42 45.02 0.11 5.47 16 17 C -0.13 -4.39 5.65 30.67 0.17 -4.22 16 18 C 0.15 6.15 6.52 86.36 0.56 6.71 16 19 N -0.61 -30.49 2.99 -699.08 -2.09 -32.59 16 20 C -0.26 -14.28 9.58 84.04 0.81 -13.48 16 21 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 22 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 23 N -0.93 -54.88 11.19 21.65 0.24 -54.63 16 24 Si 0.97 44.58 29.59 68.60 2.03 46.61 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 27 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 28 C 0.18 8.50 5.30 86.36 0.46 8.96 16 29 C -0.13 -4.73 5.55 30.67 0.17 -4.56 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.50 7.55 -2.39 -0.02 0.48 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.76 6.40 -2.39 -0.02 0.74 16 34 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.07 0.64 7.97 -2.39 -0.02 0.62 16 36 H 0.09 0.51 8.06 -2.39 -0.02 0.49 16 37 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 0.98 7.92 -2.39 -0.02 0.96 16 41 H 0.42 7.41 6.00 -92.70 -0.56 6.86 16 42 H 0.42 10.69 8.07 -92.71 -0.75 9.94 16 43 H 0.07 2.68 7.58 -2.39 -0.02 2.66 16 44 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 48 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 49 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 50 H 0.06 3.39 6.06 -2.38 -0.01 3.37 16 51 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 52 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -65.39 404.92 1.15 -64.24 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.39 Total: 25.27 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: 5.63 Total: 20.93 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -6.02 Total: -123.79 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.10 Total: -33.26 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -65.39 1.15 -64.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588126740.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.585 kcal (2) G-P(sol) polarization free energy of solvation -65.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds