Wall clock time and date at job start Tue Mar 31 2020 19:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47628 * 2 1 4 4 H 1.08997 * 109.58494 * 300.84262 * 3 2 1 5 5 C 1.53199 * 109.58193 * 61.28335 * 3 2 1 6 6 C 1.53036 * 109.31326 * 174.43721 * 5 3 2 7 7 C 1.53046 * 109.52254 * 298.61525 * 6 5 3 8 8 C 1.53188 * 109.31448 * 61.37238 * 7 6 5 9 9 N 1.46923 * 109.58508 * 180.55322 * 3 2 1 10 10 C 1.34774 * 120.63376 * 6.59271 * 9 3 2 11 11 O 1.21353 * 119.99895 * 353.69236 * 10 9 3 12 12 C 1.49453 * 120.00054 * 173.69661 * 10 9 3 13 13 O 1.21353 * 119.99992 * 353.04115 * 12 10 9 14 14 N 1.34779 * 119.99979 * 173.03277 * 12 10 9 15 15 C 1.46502 * 120.00045 * 180.02562 * 14 12 10 16 16 C 1.53045 * 109.45932 * 275.07240 * 15 14 12 17 17 C 1.53185 * 109.30939 * 178.61226 * 16 15 14 18 18 N 1.46924 * 108.77726 * 54.63956 * 17 16 15 19 19 C 1.36941 * 120.63603 * 126.36580 * 18 17 16 20 20 H 1.08004 * 119.99866 * 209.03698 * 19 18 17 21 21 C 1.38808 * 119.99944 * 29.03562 * 19 18 17 22 22 N 1.31625 * 119.99524 * 15.97517 * 21 19 18 23 23 Si 1.86799 * 120.00106 * 195.97785 * 21 19 18 24 24 H 1.48496 * 109.46992 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46958 * 120.00125 * 23 21 19 26 26 H 1.48498 * 109.46864 * 239.99836 * 23 21 19 27 27 C 1.46931 * 118.73543 * 306.38731 * 18 17 16 28 28 C 1.53034 * 109.45871 * 155.00402 * 15 14 12 29 29 H 1.08998 * 109.47561 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46858 * 299.94695 * 1 2 3 31 31 H 1.09000 * 109.46916 * 59.94145 * 1 2 3 32 32 H 1.09010 * 109.46879 * 240.00063 * 2 1 3 33 33 H 1.09005 * 109.47150 * 120.00610 * 2 1 3 34 34 H 1.08995 * 109.50952 * 54.47215 * 5 3 2 35 35 H 1.09001 * 109.48560 * 294.38312 * 5 3 2 36 36 H 1.08996 * 109.46147 * 178.59989 * 6 5 3 37 37 H 1.09005 * 109.46043 * 58.62292 * 6 5 3 38 38 H 1.09006 * 109.49228 * 181.32167 * 7 6 5 39 39 H 1.09000 * 109.49859 * 301.41428 * 7 6 5 40 40 H 1.08995 * 109.58848 * 65.15088 * 8 7 6 41 41 H 1.09003 * 109.58369 * 185.57997 * 8 7 6 42 42 H 0.97002 * 119.99546 * 0.02562 * 14 12 10 43 43 H 1.08996 * 109.45901 * 35.03058 * 15 14 12 44 44 H 1.09000 * 109.49606 * 298.56587 * 16 15 14 45 45 H 1.09003 * 109.49379 * 58.66469 * 16 15 14 46 46 H 1.08999 * 109.59091 * 294.84809 * 17 16 15 47 47 H 1.09004 * 109.58369 * 174.42091 * 17 16 15 48 48 H 0.97007 * 119.99147 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.58738 * 293.81772 * 27 18 17 50 50 H 1.09004 * 109.70353 * 173.46655 * 27 18 17 51 51 H 1.08996 * 109.50012 * 301.34021 * 28 15 14 52 52 H 1.09002 * 109.49863 * 61.39935 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6656 1.9624 -0.8817 5 6 1.5575 2.1577 1.2659 6 6 2.1836 3.5528 1.3288 7 6 3.7074 3.4269 1.3966 8 6 4.2146 2.7259 0.1325 9 7 3.5093 1.4453 -0.0134 10 6 4.1970 0.2950 -0.1565 11 8 3.6093 -0.7667 -0.1609 12 6 5.6833 0.3271 -0.3096 13 8 6.2579 1.3889 -0.4320 14 7 6.3855 -0.8233 -0.3116 15 6 7.8425 -0.7919 -0.4612 16 6 8.2014 -0.7394 -1.9481 17 6 9.7243 -0.6717 -2.0995 18 7 10.3224 -1.8006 -1.3739 19 6 11.1891 -2.6540 -2.0031 20 1 11.2626 -3.6826 -1.6820 21 6 11.9731 -2.1970 -3.0534 22 7 12.1269 -0.9040 -3.2457 23 14 12.8099 -3.4170 -4.1939 24 1 12.4811 -4.8004 -3.7660 25 1 12.3338 -3.2019 -5.5840 26 1 14.2805 -3.2184 -4.1381 27 6 9.9725 -1.9968 0.0396 28 6 8.4468 -2.0497 0.1671 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5130 0.8905 31 1 -0.3633 0.5147 -0.8895 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 1.8560 1.5850 2.1438 35 1 0.4715 2.2471 1.2413 36 1 1.8224 4.0732 2.2158 37 1 1.9051 4.1164 0.4383 38 1 4.1517 4.4199 1.4651 39 1 3.9855 2.8421 2.2734 40 1 4.0174 3.3528 -0.7371 41 1 5.2860 2.5451 0.2199 42 1 5.9261 -1.6721 -0.2141 43 1 8.2400 0.0910 0.0394 44 1 7.8258 -1.6340 -2.4447 45 1 7.7512 0.1444 -2.4000 46 1 10.0916 0.2662 -1.6830 47 1 9.9896 -0.7340 -3.1549 48 1 12.6751 -0.5847 -3.9796 49 1 10.3600 -1.1671 0.6306 50 1 10.4018 -2.9325 0.3980 51 1 8.1712 -2.0985 1.2205 52 1 8.0684 -2.9320 -0.3491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588126922.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:36 Heat of formation + Delta-G solvation = -33.907713 kcal Electronic energy + Delta-G solvation = -30675.445731 eV Core-core repulsion = 26676.043264 eV Total energy + Delta-G solvation = -3999.402467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.24993 -39.36644 -37.69061 -37.44373 -34.72624 -34.21335 -33.04613 -32.14698 -30.14651 -29.65675 -29.56851 -26.66153 -25.13801 -24.45769 -23.52485 -22.30902 -21.87890 -21.37073 -20.75592 -19.98901 -19.13001 -17.54613 -16.91432 -16.71764 -16.04642 -15.89114 -15.37430 -15.02059 -14.89472 -14.71945 -14.31988 -14.17902 -13.89843 -13.71605 -13.57927 -13.52187 -13.24620 -13.05574 -12.81822 -12.62782 -12.49954 -12.41515 -12.06694 -11.69256 -11.50499 -11.26502 -11.22668 -11.10850 -10.94463 -10.93093 -10.80652 -10.75976 -10.45232 -10.26920 -10.25640 -10.08007 -9.80977 -9.67348 -8.98737 -8.79762 -8.76175 -8.46737 -6.69929 -5.80735 -3.24987 1.43523 2.29676 3.20646 3.36332 3.44447 3.46352 3.47166 4.29694 4.46098 4.47892 4.51387 4.59852 4.77823 4.89265 4.98407 5.11353 5.18490 5.22131 5.32509 5.37364 5.40111 5.44469 5.45412 5.55467 5.56232 5.61327 5.67569 5.74913 5.75098 5.82679 5.89302 5.99283 6.02782 6.07730 6.12919 6.20010 6.29293 6.36697 6.46094 6.52569 6.61490 6.71406 6.78750 6.89378 6.99331 7.31633 7.36559 7.64511 7.77537 7.78477 8.08697 8.43529 9.18993 9.81643 10.38381 11.27926 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023456 B = 0.002364 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.445524 B =11843.707032 C =12268.557654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 C 0.142 3.858 4 H 0.075 0.925 5 C -0.131 4.131 6 C -0.123 4.123 7 C -0.135 4.135 8 C 0.061 3.939 9 N -0.579 5.579 10 C 0.508 3.492 11 O -0.518 6.518 12 C 0.502 3.498 13 O -0.515 6.515 14 N -0.688 5.688 15 C 0.148 3.852 16 C -0.148 4.148 17 C 0.175 3.825 18 N -0.593 5.593 19 C -0.254 4.254 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.903 3.097 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.149 3.851 28 C -0.140 4.140 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.149 0.851 42 H 0.407 0.593 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.022 0.978 47 H 0.090 0.910 48 H 0.254 0.746 49 H 0.021 0.979 50 H 0.060 0.940 51 H 0.057 0.943 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.193 6.961 9.390 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.152 4.152 3 C 0.040 3.960 4 H 0.093 0.907 5 C -0.169 4.169 6 C -0.160 4.160 7 C -0.173 4.173 8 C -0.060 4.060 9 N -0.312 5.312 10 C 0.291 3.709 11 O -0.395 6.395 12 C 0.283 3.717 13 O -0.393 6.393 14 N -0.338 5.338 15 C 0.045 3.955 16 C -0.188 4.188 17 C 0.048 3.952 18 N -0.315 5.315 19 C -0.384 4.384 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.732 3.268 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.217 1.217 27 C 0.022 3.978 28 C -0.180 4.180 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.166 0.834 42 H 0.243 0.757 43 H 0.105 0.895 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.040 0.960 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.039 0.961 50 H 0.078 0.922 51 H 0.076 0.924 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.954 7.210 9.171 24.861 hybrid contribution 0.058 -0.737 -0.627 0.969 sum -21.896 6.472 8.544 24.378 Atomic orbital electron populations 1.21981 0.96664 1.01792 1.01326 1.22105 0.93987 0.93997 1.05149 1.21506 0.78348 0.98091 0.98076 0.90739 1.22038 1.00637 0.96302 0.97931 1.21570 0.95691 0.96679 1.02104 1.21944 0.95733 1.01130 0.98497 1.23044 1.02451 0.83101 0.97363 1.48018 1.06492 1.07221 1.69474 1.20269 0.88364 0.84253 0.78044 1.90792 1.69167 1.30242 1.49253 1.20203 0.88005 0.85041 0.78450 1.90440 1.70959 1.28705 1.49190 1.46234 1.09142 1.08451 1.69968 1.21253 0.76167 0.99917 0.98162 1.22599 1.01572 1.00849 0.93764 1.20753 0.85595 0.89331 0.99476 1.44105 1.50725 1.31944 1.04753 1.19212 1.14711 0.90957 1.13505 0.91599 1.25096 0.97545 0.95677 1.01266 1.70036 1.41185 1.11788 1.31544 0.86223 0.78927 0.80743 0.80865 1.20234 1.21547 1.21693 1.20838 0.90217 0.99174 0.87585 1.22365 0.99948 0.96576 0.99104 0.92486 0.92866 0.93065 0.89576 0.90581 0.91410 0.90501 0.91739 0.91791 0.90507 0.91689 0.91477 0.83421 0.75704 0.89517 0.92396 0.92730 0.95996 0.89198 0.93609 0.96105 0.92173 0.92411 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.59 37.16 0.36 -0.88 16 2 C -0.11 -1.16 3.85 -26.73 -0.10 -1.26 16 3 C 0.14 1.34 3.00 -67.60 -0.20 1.14 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.13 -0.99 4.88 -26.61 -0.13 -1.12 16 6 C -0.12 -0.86 5.88 -26.69 -0.16 -1.02 16 7 C -0.13 -1.11 6.08 -26.61 -0.16 -1.28 16 8 C 0.06 0.64 6.04 -3.71 -0.02 0.62 16 9 N -0.58 -6.56 2.97 -165.73 -0.49 -7.05 16 10 C 0.51 6.79 7.67 -11.59 -0.09 6.70 16 11 O -0.52 -7.35 11.90 5.49 0.07 -7.28 16 12 C 0.50 7.39 7.72 -11.58 -0.09 7.30 16 13 O -0.51 -8.41 12.79 5.49 0.07 -8.34 16 14 N -0.69 -9.94 5.07 -54.19 -0.27 -10.22 16 15 C 0.15 2.48 2.41 -67.89 -0.16 2.31 16 16 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16 17 C 0.17 4.15 5.29 -3.72 -0.02 4.13 16 18 N -0.59 -14.51 2.99 -172.32 -0.52 -15.03 16 19 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 20 H 0.07 1.74 7.88 -52.48 -0.41 1.33 16 21 C 0.00 0.08 4.93 -17.43 -0.09 0.00 16 22 N -0.90 -26.02 11.20 55.49 0.62 -25.39 16 23 Si 0.90 21.52 29.58 -169.99 -5.03 16.49 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.15 2.99 6.51 -3.71 -0.02 2.96 16 28 C -0.14 -2.28 5.55 -26.61 -0.15 -2.42 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.36 6.60 -51.93 -0.34 0.01 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 1.05 6.43 -51.92 -0.33 0.71 16 33 H 0.08 0.88 7.05 -51.93 -0.37 0.52 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.48 6.78 -51.93 -0.35 0.12 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.15 1.87 4.17 -55.49 -0.23 1.63 16 42 H 0.41 5.31 8.09 -40.82 -0.33 4.98 16 43 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 2.40 6.10 -51.93 -0.32 2.08 16 48 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 51 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -29.55 391.55 -9.96 -39.50 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.97 Total: 4.26 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -1.33 Total: 7.16 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.66 Total: -57.70 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.14 Total: -15.62 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.55 -9.96 -39.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588126922.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.596 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds