Wall clock time and date at job start Tue Mar 31 2020 19:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47628 * 2 1 4 4 H 1.08997 * 109.58494 * 300.84262 * 3 2 1 5 5 C 1.53199 * 109.58193 * 61.28335 * 3 2 1 6 6 C 1.53036 * 109.31326 * 174.43721 * 5 3 2 7 7 C 1.53046 * 109.52254 * 298.61525 * 6 5 3 8 8 C 1.53188 * 109.31448 * 61.37238 * 7 6 5 9 9 N 1.46923 * 109.58508 * 180.55322 * 3 2 1 10 10 C 1.34774 * 120.63376 * 6.59271 * 9 3 2 11 11 O 1.21353 * 119.99895 * 353.69236 * 10 9 3 12 12 C 1.49453 * 120.00054 * 173.69661 * 10 9 3 13 13 O 1.21353 * 119.99992 * 353.04115 * 12 10 9 14 14 N 1.34779 * 119.99979 * 173.03277 * 12 10 9 15 15 C 1.46502 * 120.00045 * 180.02562 * 14 12 10 16 16 C 1.53045 * 109.45932 * 275.07240 * 15 14 12 17 17 C 1.53185 * 109.30939 * 178.61226 * 16 15 14 18 18 N 1.46924 * 108.77726 * 54.63956 * 17 16 15 19 19 C 1.36941 * 120.63603 * 126.36580 * 18 17 16 20 20 H 1.08004 * 119.99866 * 209.03698 * 19 18 17 21 21 C 1.38808 * 119.99944 * 29.03562 * 19 18 17 22 22 N 1.31625 * 119.99524 * 15.97517 * 21 19 18 23 23 Si 1.86799 * 120.00106 * 195.97785 * 21 19 18 24 24 H 1.48496 * 109.46992 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46958 * 120.00125 * 23 21 19 26 26 H 1.48498 * 109.46864 * 239.99836 * 23 21 19 27 27 C 1.46931 * 118.73543 * 306.38731 * 18 17 16 28 28 C 1.53034 * 109.45871 * 155.00402 * 15 14 12 29 29 H 1.08998 * 109.47561 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46858 * 299.94695 * 1 2 3 31 31 H 1.09000 * 109.46916 * 59.94145 * 1 2 3 32 32 H 1.09010 * 109.46879 * 240.00063 * 2 1 3 33 33 H 1.09005 * 109.47150 * 120.00610 * 2 1 3 34 34 H 1.08995 * 109.50952 * 54.47215 * 5 3 2 35 35 H 1.09001 * 109.48560 * 294.38312 * 5 3 2 36 36 H 1.08996 * 109.46147 * 178.59989 * 6 5 3 37 37 H 1.09005 * 109.46043 * 58.62292 * 6 5 3 38 38 H 1.09006 * 109.49228 * 181.32167 * 7 6 5 39 39 H 1.09000 * 109.49859 * 301.41428 * 7 6 5 40 40 H 1.08995 * 109.58848 * 65.15088 * 8 7 6 41 41 H 1.09003 * 109.58369 * 185.57997 * 8 7 6 42 42 H 0.97002 * 119.99546 * 0.02562 * 14 12 10 43 43 H 1.08996 * 109.45901 * 35.03058 * 15 14 12 44 44 H 1.09000 * 109.49606 * 298.56587 * 16 15 14 45 45 H 1.09003 * 109.49379 * 58.66469 * 16 15 14 46 46 H 1.08999 * 109.59091 * 294.84809 * 17 16 15 47 47 H 1.09004 * 109.58369 * 174.42091 * 17 16 15 48 48 H 0.97007 * 119.99147 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.58738 * 293.81772 * 27 18 17 50 50 H 1.09004 * 109.70353 * 173.46655 * 27 18 17 51 51 H 1.08996 * 109.50012 * 301.34021 * 28 15 14 52 52 H 1.09002 * 109.49863 * 61.39935 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6656 1.9624 -0.8817 5 6 1.5575 2.1577 1.2659 6 6 2.1836 3.5528 1.3288 7 6 3.7074 3.4269 1.3966 8 6 4.2146 2.7259 0.1325 9 7 3.5093 1.4453 -0.0134 10 6 4.1970 0.2950 -0.1565 11 8 3.6093 -0.7667 -0.1609 12 6 5.6833 0.3271 -0.3096 13 8 6.2579 1.3889 -0.4320 14 7 6.3855 -0.8233 -0.3116 15 6 7.8425 -0.7919 -0.4612 16 6 8.2014 -0.7394 -1.9481 17 6 9.7243 -0.6717 -2.0995 18 7 10.3224 -1.8006 -1.3739 19 6 11.1891 -2.6540 -2.0031 20 1 11.2626 -3.6826 -1.6820 21 6 11.9731 -2.1970 -3.0534 22 7 12.1269 -0.9040 -3.2457 23 14 12.8099 -3.4170 -4.1939 24 1 12.4811 -4.8004 -3.7660 25 1 12.3338 -3.2019 -5.5840 26 1 14.2805 -3.2184 -4.1381 27 6 9.9725 -1.9968 0.0396 28 6 8.4468 -2.0497 0.1671 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5130 0.8905 31 1 -0.3633 0.5147 -0.8895 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 1.8560 1.5850 2.1438 35 1 0.4715 2.2471 1.2413 36 1 1.8224 4.0732 2.2158 37 1 1.9051 4.1164 0.4383 38 1 4.1517 4.4199 1.4651 39 1 3.9855 2.8421 2.2734 40 1 4.0174 3.3528 -0.7371 41 1 5.2860 2.5451 0.2199 42 1 5.9261 -1.6721 -0.2141 43 1 8.2400 0.0910 0.0394 44 1 7.8258 -1.6340 -2.4447 45 1 7.7512 0.1444 -2.4000 46 1 10.0916 0.2662 -1.6830 47 1 9.9896 -0.7340 -3.1549 48 1 12.6751 -0.5847 -3.9796 49 1 10.3600 -1.1671 0.6306 50 1 10.4018 -2.9325 0.3980 51 1 8.1712 -2.0985 1.2205 52 1 8.0684 -2.9320 -0.3491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588126922.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:35 Heat of formation + Delta-G solvation = -51.544825 kcal Electronic energy + Delta-G solvation = -30676.210534 eV Core-core repulsion = 26676.043264 eV Total energy + Delta-G solvation = -4000.167269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.27582 -40.52781 -38.97885 -38.60828 -36.21923 -35.01335 -34.09110 -33.69734 -31.82848 -31.30192 -30.33287 -27.81818 -26.69987 -25.20826 -24.73883 -23.94219 -23.24223 -22.24461 -21.69671 -21.28395 -20.44776 -18.90003 -18.39309 -17.91749 -17.09641 -17.04359 -16.80328 -16.31332 -15.90879 -15.68518 -15.52447 -15.36558 -15.30927 -15.01995 -14.77722 -14.58497 -14.41187 -14.19375 -14.10854 -14.03133 -13.53202 -13.28335 -13.20179 -13.04270 -12.83441 -12.66593 -12.60580 -12.37703 -12.14605 -12.03554 -11.90800 -11.87926 -11.84005 -11.64134 -11.59796 -11.52573 -11.35743 -11.11204 -10.60277 -10.22615 -9.87635 -9.66754 -8.70090 -7.88099 -5.35050 0.32358 1.25782 1.46706 1.48715 1.59034 2.09170 2.41795 2.51133 3.23734 3.29622 3.65880 3.72708 3.81704 3.81963 3.94846 4.01440 4.07700 4.22966 4.26428 4.28256 4.40757 4.44860 4.51850 4.62355 4.64733 4.66884 4.78589 4.80584 4.85289 4.92129 4.96407 5.00817 5.02279 5.04934 5.10844 5.11365 5.18489 5.26769 5.29940 5.30738 5.31878 5.43696 5.44937 5.48646 5.64299 5.65788 5.69485 5.99923 6.23311 6.39259 6.73110 6.94808 7.13771 7.83967 8.36332 9.19022 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023456 B = 0.002364 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.445524 B =11843.707032 C =12268.557654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C 0.137 3.863 4 H 0.086 0.914 5 C -0.125 4.125 6 C -0.119 4.119 7 C -0.131 4.131 8 C 0.059 3.941 9 N -0.574 5.574 10 C 0.507 3.493 11 O -0.529 6.529 12 C 0.500 3.500 13 O -0.533 6.533 14 N -0.680 5.680 15 C 0.160 3.840 16 C -0.132 4.132 17 C 0.184 3.816 18 N -0.610 5.610 19 C -0.260 4.260 20 H 0.071 0.929 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.293 1.293 27 C 0.143 3.857 28 C -0.125 4.125 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.417 0.583 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.052 0.948 46 H -0.003 1.003 47 H 0.055 0.945 48 H 0.249 0.751 49 H 0.018 0.982 50 H 0.067 0.933 51 H 0.092 0.908 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.678 6.815 10.572 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C 0.036 3.964 4 H 0.104 0.896 5 C -0.163 4.163 6 C -0.157 4.157 7 C -0.169 4.169 8 C -0.062 4.062 9 N -0.306 5.306 10 C 0.289 3.711 11 O -0.408 6.408 12 C 0.282 3.718 13 O -0.412 6.412 14 N -0.331 5.331 15 C 0.056 3.944 16 C -0.172 4.172 17 C 0.058 3.942 18 N -0.334 5.334 19 C -0.391 4.391 20 H 0.089 0.911 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.795 3.205 24 H -0.188 1.188 25 H -0.219 1.219 26 H -0.220 1.220 27 C 0.017 3.983 28 C -0.164 4.164 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.144 0.856 42 H 0.254 0.746 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.015 0.985 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.036 0.964 50 H 0.086 0.914 51 H 0.110 0.890 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.485 7.058 10.389 27.518 hybrid contribution 0.810 -0.632 -0.951 1.400 sum -23.675 6.427 9.438 26.284 Atomic orbital electron populations 1.21925 0.94569 1.02155 1.02498 1.21944 0.95727 0.93979 1.03043 1.21729 0.76891 0.98082 0.99729 0.89649 1.22018 1.01887 0.96192 0.96240 1.21568 0.94328 0.96479 1.03304 1.21918 0.97007 1.01264 0.96692 1.23008 1.01277 0.82919 0.98967 1.48151 1.07494 1.06841 1.68152 1.20004 0.87553 0.84846 0.78676 1.90806 1.69000 1.30717 1.50229 1.20572 0.88835 0.84637 0.77779 1.90471 1.71660 1.29359 1.49701 1.45985 1.08008 1.09085 1.70061 1.20897 0.77676 0.99915 0.95883 1.22340 0.98148 1.00668 0.96086 1.20460 0.88316 0.88296 0.97162 1.44351 1.50724 1.31583 1.06731 1.19567 1.14357 0.91587 1.13542 0.91095 1.25864 0.98802 0.97162 1.02956 1.70193 1.42383 1.13589 1.32092 0.85209 0.77459 0.79254 0.78541 1.18816 1.21911 1.21969 1.21023 0.92916 0.99325 0.85008 1.22175 0.96758 0.96188 1.01293 0.92624 0.91362 0.92137 0.92020 0.92360 0.92290 0.88383 0.90159 0.90920 0.89225 0.92510 0.90753 0.85588 0.74557 0.90730 0.92378 0.92976 0.98514 0.92698 0.94140 0.96418 0.91439 0.88951 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.59 71.98 0.69 -1.34 16 2 C -0.11 -2.07 3.85 30.59 0.12 -1.96 16 3 C 0.14 2.33 3.00 44.98 0.14 2.46 16 4 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.13 -1.55 4.88 30.67 0.15 -1.41 16 6 C -0.12 -1.31 5.88 30.62 0.18 -1.13 16 7 C -0.13 -1.91 6.08 30.67 0.19 -1.72 16 8 C 0.06 1.17 6.04 86.36 0.52 1.70 16 9 N -0.57 -12.43 2.97 -796.59 -2.37 -14.80 16 10 C 0.51 13.30 7.67 87.27 0.67 13.96 16 11 O -0.53 -14.79 11.90 -3.25 -0.04 -14.83 16 12 C 0.50 14.54 7.72 87.27 0.67 15.22 16 13 O -0.53 -17.50 12.79 -3.26 -0.04 -17.55 16 14 N -0.68 -19.03 5.07 -443.73 -2.25 -21.28 16 15 C 0.16 5.27 2.41 45.02 0.11 5.38 16 16 C -0.13 -5.20 5.65 30.67 0.17 -5.02 16 17 C 0.18 9.07 5.29 86.36 0.46 9.53 16 18 N -0.61 -30.29 2.99 -699.09 -2.09 -32.38 16 19 C -0.26 -14.15 9.58 84.03 0.81 -13.34 16 20 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 21 C -0.05 -2.94 4.93 84.86 0.42 -2.52 16 22 N -0.94 -55.93 11.20 21.65 0.24 -55.69 16 23 Si 0.97 44.88 29.58 68.60 2.03 46.91 16 24 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 C 0.14 5.64 6.51 86.36 0.56 6.20 16 28 C -0.12 -3.82 5.55 30.67 0.17 -3.65 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.70 6.60 -2.39 -0.02 0.69 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.48 6.43 -2.38 -0.02 1.46 16 33 H 0.06 1.31 7.05 -2.38 -0.02 1.29 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 0.84 6.78 -2.39 -0.02 0.82 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.71 8.14 -2.38 -0.02 0.70 16 38 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.13 3.17 4.17 -58.75 -0.25 2.93 16 42 H 0.42 10.24 8.09 -92.71 -0.75 9.49 16 43 H 0.07 2.69 7.58 -2.39 -0.02 2.67 16 44 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 45 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 47 H 0.05 3.07 6.10 -2.39 -0.01 3.06 16 48 H 0.25 14.43 8.31 -92.70 -0.77 13.65 16 49 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 50 H 0.07 2.54 7.94 -2.38 -0.02 2.52 16 51 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 52 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -65.61 391.55 1.43 -64.18 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.08 Total: 23.07 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: 6.02 Total: 22.35 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -6.46 Total: -124.14 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.08 Total: -32.37 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.61 1.43 -64.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588126922.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.639 kcal (2) G-P(sol) polarization free energy of solvation -65.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds