Wall clock time and date at job start Tue Mar 31 2020 19:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.46956 * 2 1 4 4 H 1.08994 * 109.70491 * 60.71727 * 3 2 1 5 5 C 1.53195 * 109.58605 * 300.36116 * 3 2 1 6 6 C 1.53040 * 109.31376 * 185.57820 * 5 3 2 7 7 C 1.53038 * 109.53611 * 61.36812 * 6 5 3 8 8 C 1.53617 * 109.24396 * 298.51203 * 7 6 5 9 9 N 1.46921 * 108.54577 * 54.85152 * 8 7 6 10 10 C 1.34780 * 120.62649 * 126.36889 * 9 8 7 11 11 O 1.21350 * 119.99828 * 174.50416 * 10 9 8 12 12 C 1.49450 * 120.00309 * 354.50004 * 10 9 8 13 13 O 1.21350 * 119.99795 * 6.28963 * 12 10 9 14 14 N 1.34776 * 119.99826 * 186.28964 * 12 10 9 15 15 C 1.46499 * 119.99634 * 179.97438 * 14 12 10 16 16 C 1.53035 * 109.46489 * 274.75494 * 15 14 12 17 17 C 1.53196 * 109.31536 * 178.59976 * 16 15 14 18 18 N 1.46923 * 108.76236 * 54.65629 * 17 16 15 19 19 C 1.36939 * 120.63004 * 126.35927 * 18 17 16 20 20 H 1.08000 * 120.00466 * 324.79081 * 19 18 17 21 21 C 1.38819 * 119.99851 * 144.78181 * 19 18 17 22 22 N 1.31615 * 119.99911 * 4.52972 * 21 19 18 23 23 Si 1.86804 * 119.99882 * 184.52392 * 21 19 18 24 24 H 1.48499 * 109.46949 * 90.00281 * 23 21 19 25 25 H 1.48495 * 109.46670 * 210.00201 * 23 21 19 26 26 H 1.48495 * 109.47060 * 330.00351 * 23 21 19 27 27 C 1.46923 * 118.74001 * 306.38304 * 18 17 16 28 28 C 1.53036 * 109.45854 * 154.69696 * 15 14 12 29 29 H 1.08993 * 109.47382 * 65.05777 * 1 2 3 30 30 H 1.09003 * 109.47431 * 185.05578 * 1 2 3 31 31 H 1.09004 * 109.47408 * 305.05291 * 1 2 3 32 32 H 1.09002 * 109.47027 * 239.99553 * 2 1 3 33 33 H 1.08996 * 109.46959 * 119.99653 * 2 1 3 34 34 H 1.08997 * 109.50362 * 305.53373 * 5 3 2 35 35 H 1.09001 * 109.49374 * 65.59677 * 5 3 2 36 36 H 1.09001 * 109.45984 * 181.38858 * 6 5 3 37 37 H 1.08998 * 109.45996 * 301.35924 * 6 5 3 38 38 H 1.09000 * 109.49678 * 58.59075 * 7 6 5 39 39 H 1.09007 * 109.49534 * 178.64676 * 7 6 5 40 40 H 1.08999 * 109.73848 * 295.11706 * 8 7 6 41 41 H 1.08998 * 109.66634 * 174.55489 * 8 7 6 42 42 H 0.96995 * 120.00031 * 359.73300 * 14 12 10 43 43 H 1.09006 * 109.46140 * 34.73235 * 15 14 12 44 44 H 1.09001 * 109.49646 * 298.56512 * 16 15 14 45 45 H 1.09001 * 109.49959 * 58.66327 * 16 15 14 46 46 H 1.08995 * 109.59590 * 294.87058 * 17 16 15 47 47 H 1.08996 * 109.70137 * 174.50616 * 17 16 15 48 48 H 0.97001 * 120.00106 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.58646 * 293.82419 * 27 18 17 50 50 H 1.09004 * 109.70394 * 173.46653 * 27 18 17 51 51 H 1.08996 * 109.50461 * 301.34342 * 28 15 14 52 52 H 1.09002 * 109.49815 * 61.40764 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6892 1.9562 0.8950 5 6 1.5233 2.1698 -1.2454 6 6 2.1478 3.5654 -1.3120 7 6 3.6691 3.4405 -1.4220 8 6 4.2102 2.7282 -0.1731 9 7 3.5089 1.4456 -0.0260 10 6 4.2002 0.2942 0.0884 11 8 3.6148 -0.7455 0.3091 12 6 5.6877 0.2981 -0.0566 13 8 6.2841 1.3495 -0.1632 14 7 6.3665 -0.8662 -0.0689 15 6 7.8245 -0.8624 -0.2116 16 6 8.1914 -0.8079 -1.6963 17 6 9.7161 -0.7688 -1.8404 18 7 10.2884 -1.9138 -1.1193 19 6 11.1412 -2.7800 -1.7500 20 1 10.9938 -3.0197 -2.7927 21 6 12.1952 -3.3499 -1.0491 22 7 12.3231 -3.1285 0.2420 23 14 13.4320 -4.4312 -1.9384 24 1 14.5481 -3.5930 -2.4451 25 1 13.9650 -5.4497 -0.9983 26 1 12.7659 -5.1104 -3.0786 27 6 9.9281 -2.1121 0.2912 28 6 8.4010 -2.1358 0.4114 29 1 -0.3634 0.4333 -0.9317 30 1 -0.3634 -1.0237 0.0906 31 1 -0.3634 0.5902 0.8413 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.7978 1.6054 -2.1365 35 1 0.4382 2.2585 -1.1909 36 1 1.7629 4.0942 -2.1840 37 1 1.8934 4.1205 -0.4092 38 1 3.9235 2.8642 -2.3115 39 1 4.1114 4.4342 -1.4936 40 1 4.0329 3.3447 0.7081 41 1 5.2793 2.5493 -0.2872 42 1 5.8901 -1.7063 0.0202 43 1 8.2369 0.0093 0.2966 44 1 7.8008 -1.6919 -2.2003 45 1 7.7608 0.0873 -2.1450 46 1 10.0997 0.1590 -1.4161 47 1 9.9873 -0.8282 -2.8944 48 1 13.0599 -3.5264 0.7317 49 1 10.3290 -1.2938 0.8893 50 1 10.3372 -3.0583 0.6455 51 1 8.1196 -2.1859 1.4632 52 1 8.0079 -3.0072 -0.1123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588126923.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:38 Heat of formation + Delta-G solvation = -47.303992 kcal Electronic energy + Delta-G solvation = -30689.328828 eV Core-core repulsion = 26689.345455 eV Total energy + Delta-G solvation = -3999.983373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.28451 -40.51640 -38.96733 -38.61293 -36.22491 -34.98337 -34.09381 -33.69956 -31.83595 -31.23318 -30.29525 -27.82908 -26.70298 -25.20759 -24.73893 -23.89752 -23.21740 -22.25550 -21.70640 -21.23259 -20.48003 -18.96548 -18.35939 -17.93870 -17.17623 -16.96363 -16.74367 -16.30834 -15.84597 -15.76452 -15.52594 -15.37468 -15.26673 -15.04891 -14.80405 -14.58780 -14.37205 -14.22474 -14.08574 -13.99012 -13.51103 -13.28185 -13.24414 -12.85941 -12.79420 -12.72894 -12.57298 -12.44166 -12.17272 -12.01613 -11.90940 -11.86449 -11.86003 -11.65585 -11.60687 -11.54967 -11.36263 -10.98235 -10.54226 -10.22575 -9.78675 -9.70103 -8.57793 -7.86727 -5.42666 0.31768 1.25515 1.48450 1.49930 1.58243 2.10636 2.42380 2.50464 3.21892 3.30603 3.68772 3.73235 3.82608 3.85662 3.96428 4.00129 4.09197 4.23577 4.26448 4.29408 4.41550 4.45827 4.52285 4.61008 4.64989 4.66853 4.80802 4.84550 4.85373 4.92212 4.95165 5.00518 5.01074 5.08745 5.11753 5.14559 5.18639 5.26920 5.29612 5.30749 5.32362 5.45038 5.51333 5.54883 5.65056 5.68853 5.80746 6.02126 6.23693 6.46885 6.74743 6.95202 7.18217 7.84276 8.38591 9.17410 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025037 B = 0.002329 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.090859 B =12017.573382 C =12511.770058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.138 3.862 4 H 0.088 0.912 5 C -0.126 4.126 6 C -0.119 4.119 7 C -0.129 4.129 8 C 0.039 3.961 9 N -0.572 5.572 10 C 0.506 3.494 11 O -0.532 6.532 12 C 0.504 3.496 13 O -0.528 6.528 14 N -0.680 5.680 15 C 0.160 3.840 16 C -0.126 4.126 17 C 0.147 3.853 18 N -0.612 5.612 19 C -0.266 4.266 20 H 0.065 0.935 21 C -0.043 4.043 22 N -0.933 5.933 23 Si 0.968 3.032 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.269 1.269 27 C 0.175 3.825 28 C -0.133 4.133 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.146 0.854 42 H 0.416 0.584 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.016 0.984 47 H 0.059 0.941 48 H 0.251 0.749 49 H -0.003 1.003 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.550 12.184 -0.829 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C 0.036 3.964 4 H 0.106 0.894 5 C -0.164 4.164 6 C -0.157 4.157 7 C -0.167 4.167 8 C -0.081 4.081 9 N -0.305 5.305 10 C 0.289 3.711 11 O -0.410 6.410 12 C 0.286 3.714 13 O -0.407 6.407 14 N -0.331 5.331 15 C 0.056 3.944 16 C -0.166 4.166 17 C 0.020 3.980 18 N -0.336 5.336 19 C -0.396 4.396 20 H 0.083 0.917 21 C -0.239 4.239 22 N -0.578 5.578 23 Si 0.796 3.204 24 H -0.213 1.213 25 H -0.219 1.219 26 H -0.194 1.194 27 C 0.049 3.951 28 C -0.173 4.173 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.162 0.838 42 H 0.253 0.747 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.034 0.966 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.015 0.985 50 H 0.094 0.906 51 H 0.092 0.908 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.316 12.308 -0.694 27.263 hybrid contribution 0.897 -0.971 -0.178 1.334 sum -23.419 11.337 -0.872 26.034 Atomic orbital electron populations 1.21896 0.94476 1.02117 1.02471 1.21986 0.95913 0.94191 1.03196 1.21711 0.77031 0.97901 0.99724 0.89428 1.22020 1.01727 0.96197 0.96461 1.21571 0.94501 0.96390 1.03219 1.21935 0.96703 1.01135 0.96931 1.23515 1.03059 0.82651 0.98913 1.48179 1.07412 1.06649 1.68210 1.19998 0.87584 0.84651 0.78892 1.90787 1.69137 1.32597 1.48475 1.20558 0.88963 0.84480 0.77425 1.90270 1.69984 1.29819 1.50648 1.46037 1.08223 1.08866 1.69946 1.20914 0.77521 0.99324 0.96640 1.22212 0.97452 1.01508 0.95409 1.20973 0.91333 0.89341 0.96306 1.44277 1.53235 1.27160 1.08937 1.19463 1.04189 1.20282 0.95633 0.91686 1.26045 0.98874 1.02209 0.96759 1.70046 1.31852 1.48358 1.07556 0.85260 0.79360 0.77835 0.77917 1.21259 1.21917 1.19388 1.20733 0.89439 1.00350 0.84615 1.22341 0.98433 0.96139 1.00384 0.91727 0.92684 0.91779 0.93316 0.90843 0.92643 0.88416 0.90404 0.90751 0.92966 0.89361 0.90534 0.83835 0.74690 0.90723 0.92014 0.91405 0.96604 0.92220 0.93901 0.98483 0.90574 0.90755 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.40 71.98 0.68 -1.35 16 2 C -0.12 -2.20 3.89 30.59 0.12 -2.09 16 3 C 0.14 2.33 3.02 44.97 0.14 2.46 16 4 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.13 -1.63 4.84 30.67 0.15 -1.48 16 6 C -0.12 -1.36 5.88 30.62 0.18 -1.18 16 7 C -0.13 -1.95 6.10 30.81 0.19 -1.76 16 8 C 0.04 0.75 6.31 86.51 0.55 1.29 16 9 N -0.57 -12.20 2.97 -795.80 -2.36 -14.56 16 10 C 0.51 13.17 7.60 87.27 0.66 13.83 16 11 O -0.53 -14.97 12.04 -3.25 -0.04 -15.01 16 12 C 0.50 14.29 7.78 87.27 0.68 14.97 16 13 O -0.53 -16.35 12.67 -3.25 -0.04 -16.39 16 14 N -0.68 -19.24 5.07 -443.75 -2.25 -21.49 16 15 C 0.16 5.31 2.42 45.02 0.11 5.42 16 16 C -0.13 -4.34 5.65 30.67 0.17 -4.17 16 17 C 0.15 6.11 6.52 86.36 0.56 6.67 16 18 N -0.61 -30.45 3.00 -699.10 -2.10 -32.54 16 19 C -0.27 -14.41 9.56 84.03 0.80 -13.61 16 20 H 0.07 3.44 7.83 -2.91 -0.02 3.42 16 21 C -0.04 -2.38 5.33 84.86 0.45 -1.93 16 22 N -0.93 -53.96 10.59 21.65 0.23 -53.73 16 23 Si 0.97 44.23 29.56 68.60 2.03 46.26 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 27 C 0.17 8.30 5.27 86.37 0.45 8.75 16 28 C -0.13 -4.83 5.55 30.67 0.17 -4.66 16 29 H 0.06 0.71 6.85 -2.39 -0.02 0.69 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 1.12 7.28 -2.39 -0.02 1.11 16 33 H 0.07 1.74 6.18 -2.39 -0.01 1.73 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 0.89 6.87 -2.39 -0.02 0.87 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.15 3.50 3.70 -85.91 -0.32 3.19 16 42 H 0.42 10.74 8.09 -92.71 -0.75 9.99 16 43 H 0.07 2.71 7.57 -2.38 -0.02 2.70 16 44 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 48 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 49 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 50 H 0.08 4.11 5.89 -2.39 -0.01 4.09 16 51 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 52 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -62.45 390.96 1.38 -61.07 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.15 Total: 25.22 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 6.06 Total: 21.18 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -6.48 Total: -122.32 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.08 Total: -31.40 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -62.45 1.38 -61.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588126923.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.761 kcal (2) G-P(sol) polarization free energy of solvation -62.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds