Wall clock time and date at job start Tue Mar 31 2020 20:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46778 * 2 1 4 4 H 1.08992 * 109.51038 * 304.69329 * 3 2 1 5 5 C 1.53100 * 109.54276 * 64.81396 * 3 2 1 6 6 O 1.43016 * 109.25737 * 176.80151 * 5 3 2 7 7 C 1.43017 * 113.73659 * 301.32472 * 6 5 3 8 8 C 1.53000 * 109.50205 * 178.60748 * 7 6 5 9 9 C 1.52993 * 109.50653 * 298.73696 * 7 6 5 10 10 C 1.53098 * 109.25761 * 58.67575 * 7 6 5 11 11 N 1.47011 * 109.25658 * 303.14751 * 10 7 6 12 12 C 1.46901 * 110.99975 * 182.39956 * 11 10 7 13 13 C 1.50697 * 109.46846 * 300.69440 * 12 11 10 14 14 O 1.21286 * 120.00075 * 354.59404 * 13 12 11 15 15 N 1.34771 * 120.00306 * 174.58609 * 13 12 11 16 16 C 1.46506 * 120.00343 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47291 * 270.00152 * 16 15 13 18 18 H 1.07998 * 119.99808 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99720 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99942 * 180.02562 * 19 17 16 21 21 Si 1.86792 * 120.00347 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47421 * 89.99579 * 21 19 17 23 23 H 1.48507 * 109.47272 * 209.99838 * 21 19 17 24 24 H 1.48502 * 109.47071 * 329.99764 * 21 19 17 25 25 C 1.46501 * 119.99814 * 0.02562 * 15 13 12 26 26 C 1.53004 * 109.47205 * 269.99647 * 25 15 13 27 27 C 1.47195 * 109.47389 * 179.97438 * 26 25 15 28 28 N 7.67754 * 143.95223 * 248.29912 * 2 1 3 29 29 H 1.08998 * 109.47511 * 174.31154 * 1 2 3 30 30 H 1.09001 * 109.46915 * 294.31543 * 1 2 3 31 31 H 1.09007 * 109.47451 * 54.31058 * 1 2 3 32 32 H 1.09002 * 109.47037 * 240.00670 * 2 1 3 33 33 H 1.08997 * 109.47479 * 120.00148 * 2 1 3 34 34 H 1.09004 * 109.49730 * 296.73423 * 5 3 2 35 35 H 1.08996 * 109.50683 * 56.86129 * 5 3 2 36 36 H 1.08999 * 109.47430 * 60.00123 * 8 7 6 37 37 H 1.09001 * 109.46970 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.47359 * 300.00125 * 8 7 6 39 39 H 1.08995 * 109.47582 * 60.00007 * 9 7 6 40 40 H 1.09003 * 109.47054 * 180.02562 * 9 7 6 41 41 H 1.09008 * 109.47383 * 300.00074 * 9 7 6 42 42 H 1.09004 * 109.50507 * 183.21507 * 10 7 6 43 43 H 1.08998 * 109.51107 * 63.08509 * 10 7 6 44 44 H 1.09000 * 109.47116 * 180.70232 * 12 11 10 45 45 H 1.08995 * 109.47552 * 60.69372 * 12 11 10 46 46 H 1.09000 * 109.46739 * 150.00020 * 16 15 13 47 47 H 1.09001 * 109.46782 * 30.00508 * 16 15 13 48 48 H 0.96993 * 120.00354 * 180.02562 * 20 19 17 49 49 H 1.08995 * 109.47002 * 29.99586 * 25 15 13 50 50 H 1.08998 * 109.47383 * 149.99818 * 25 15 13 51 51 H 1.09001 * 109.46608 * 300.00367 * 26 25 15 52 52 H 1.08998 * 109.46810 * 59.99820 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6099 1.9806 -0.8447 5 6 1.6317 2.1300 1.3056 6 8 2.1745 3.4529 1.3319 7 6 3.6002 3.4924 1.2260 8 6 4.0726 4.9477 1.2292 9 6 4.2212 2.7502 2.4111 10 6 4.0284 2.8187 -0.0804 11 7 3.5059 1.4450 -0.1115 12 6 3.9428 0.7429 -1.3256 13 6 3.4535 1.4884 -2.5404 14 8 2.7234 2.4481 -2.4098 15 7 3.8274 1.0890 -3.7721 16 6 3.3522 1.8141 -4.9531 17 6 2.0551 1.2096 -5.4256 18 1 1.6273 0.3696 -4.8986 19 6 1.4142 1.7297 -6.5300 20 7 0.2820 1.2025 -6.9421 21 14 2.1538 3.1830 -7.4410 22 1 3.0601 2.6889 -8.5086 23 1 1.0666 3.9912 -8.0494 24 1 2.9229 4.0244 -6.4892 25 6 4.7090 -0.0704 -3.9300 26 6 6.1673 0.3922 -3.9165 27 6 7.0531 -0.7727 -4.0746 28 7 7.7375 -1.6706 -4.1977 29 1 -0.3634 -1.0226 -0.1019 30 1 -0.3633 0.4232 0.9365 31 1 -0.3634 0.5996 -0.8347 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.5445 2.1814 1.3653 35 1 2.0169 1.5616 2.1521 36 1 3.7641 5.4278 2.1578 37 1 5.1591 4.9771 1.1480 38 1 3.6310 5.4748 0.3835 39 1 3.8855 1.7133 2.4067 40 1 5.3078 2.7810 2.3300 41 1 3.9129 3.2280 3.3411 42 1 5.1167 2.7956 -0.1383 43 1 3.6301 3.3789 -0.9264 44 1 3.5320 -0.2667 -1.3292 45 1 5.0314 0.6924 -1.3444 46 1 4.0963 1.7435 -5.7465 47 1 3.1929 2.8615 -4.6966 48 1 -0.1688 1.5681 -7.7192 49 1 4.5416 -0.7684 -3.1098 50 1 4.4933 -0.5645 -4.8774 51 1 6.3346 1.0903 -4.7368 52 1 6.3829 0.8863 -2.9692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593056365.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:08 Heat of formation + Delta-G solvation = -41.763973 kcal Electronic energy + Delta-G solvation = -31743.435915 eV Core-core repulsion = 27743.692776 eV Total energy + Delta-G solvation = -3999.743140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.70946 -39.06130 -37.06000 -36.12025 -35.28443 -34.21918 -32.87057 -32.20295 -31.08407 -29.29746 -27.95124 -27.17045 -26.91094 -24.79468 -24.08346 -23.29405 -22.08545 -20.70885 -19.28543 -18.55785 -17.79585 -16.91345 -16.80928 -16.60886 -16.27508 -15.46155 -15.16761 -14.89964 -14.82495 -14.65272 -14.43943 -14.08862 -13.89355 -13.70414 -13.42725 -13.18248 -12.84970 -12.67512 -12.56642 -12.51340 -12.45504 -12.34052 -12.18193 -11.97213 -11.90293 -11.71339 -11.68677 -11.53808 -11.18940 -11.14227 -11.06485 -10.95111 -10.76943 -10.64738 -10.44143 -10.18399 -10.12361 -9.90657 -9.60024 -9.33969 -8.67398 -7.98598 -7.87257 -6.16607 -4.16401 2.62833 2.72174 3.07618 3.20222 3.29039 3.31250 3.49212 3.77740 3.89450 4.08028 4.31860 4.77711 4.80477 4.89216 4.90798 4.96404 5.01610 5.03854 5.12002 5.16693 5.22957 5.33082 5.39015 5.44532 5.51038 5.52809 5.58414 5.62747 5.66464 5.67707 5.74920 5.76547 5.85725 5.95099 5.99822 6.05419 6.07936 6.18292 6.23348 6.32046 6.33739 6.48483 6.51103 6.82294 6.96625 7.05014 7.13007 7.36066 7.47985 7.50910 8.00088 8.36339 8.73207 8.86782 9.42968 10.96587 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008730 B = 0.004325 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.515913 B = 6473.063878 C = 7684.341623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C 0.028 3.972 4 H 0.094 0.906 5 C 0.072 3.928 6 O -0.375 6.375 7 C 0.117 3.883 8 C -0.137 4.137 9 C -0.167 4.167 10 C 0.013 3.987 11 N -0.507 5.507 12 C 0.025 3.975 13 C 0.479 3.521 14 O -0.526 6.526 15 N -0.590 5.590 16 C 0.214 3.786 17 C -0.530 4.530 18 H 0.074 0.926 19 C 0.074 3.926 20 N -0.895 5.895 21 Si 0.873 3.127 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.264 1.264 25 C 0.116 3.884 26 C -0.050 4.050 27 C 0.215 3.785 28 N -0.441 5.441 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.026 0.974 47 H 0.043 0.957 48 H 0.265 0.735 49 H 0.079 0.921 50 H 0.097 0.903 51 H 0.115 0.885 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.885 1.130 16.131 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.080 4.080 4 H 0.111 0.889 5 C -0.005 4.005 6 O -0.294 6.294 7 C 0.077 3.923 8 C -0.195 4.195 9 C -0.225 4.225 10 C -0.115 4.115 11 N -0.230 5.230 12 C -0.107 4.107 13 C 0.265 3.735 14 O -0.403 6.403 15 N -0.321 5.321 16 C 0.093 3.907 17 C -0.569 4.569 18 H 0.093 0.907 19 C -0.129 4.129 20 N -0.533 5.533 21 Si 0.700 3.300 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.189 1.189 25 C -0.010 4.010 26 C -0.092 4.092 27 C -0.103 4.103 28 N -0.118 5.118 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.125 0.875 45 H 0.116 0.884 46 H 0.044 0.956 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.115 0.885 51 H 0.133 0.867 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.441 0.253 16.304 18.842 hybrid contribution -0.135 1.082 -1.484 1.841 sum 9.306 1.335 14.820 17.550 Atomic orbital electron populations 1.21783 0.95338 1.01926 1.01994 1.21545 0.96038 0.95520 1.02169 1.22679 0.87888 0.97224 1.00175 0.88857 1.22681 0.98463 0.83459 0.95858 1.88019 1.19970 1.27262 1.94139 1.21478 0.81406 0.95614 0.93798 1.21727 1.00780 0.94038 1.02967 1.22287 1.00855 1.01757 0.97560 1.23018 0.99803 0.89695 0.99000 1.62693 1.10620 1.16063 1.33586 1.22478 1.01770 0.99408 0.87040 1.21712 0.81346 0.85393 0.85029 1.90612 1.36068 1.28333 1.85283 1.48060 1.46834 1.29872 1.07371 1.19718 0.95300 0.93556 0.82104 1.21264 1.05397 1.17527 1.12688 0.90741 1.24846 0.94626 0.96524 0.96864 1.69885 1.16430 1.41470 1.25509 0.86901 0.79389 0.83388 0.80365 1.20083 1.20957 1.18852 1.21343 0.85970 0.88915 1.04814 1.19875 0.92562 0.90869 1.05844 1.29007 0.93812 0.94454 0.93025 1.81209 1.10338 1.11112 1.09121 0.92589 0.92861 0.92022 0.91636 0.91694 0.88832 0.92823 0.91873 0.91278 0.91677 0.91065 0.92047 0.92788 0.90754 0.90107 0.87475 0.88429 0.95598 0.93956 0.92494 0.90260 0.88486 0.86715 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.52 37.16 0.35 -1.48 16 2 C -0.11 -1.41 5.25 -26.73 -0.14 -1.55 16 3 C 0.03 0.40 1.71 -67.59 -0.12 0.28 16 4 H 0.09 1.72 5.60 -51.93 -0.29 1.43 16 5 C 0.07 0.93 5.56 37.21 0.21 1.14 16 6 O -0.37 -5.46 10.28 -35.23 -0.36 -5.82 16 7 C 0.12 1.42 1.11 -90.57 -0.10 1.32 16 8 C -0.14 -1.46 8.85 37.16 0.33 -1.13 16 9 C -0.17 -1.71 8.17 37.15 0.30 -1.41 16 10 C 0.01 0.17 3.95 -3.71 -0.01 0.15 16 11 N -0.51 -6.49 4.11 -227.77 -0.94 -7.43 16 12 C 0.02 0.30 4.03 -4.98 -0.02 0.28 16 13 C 0.48 8.00 7.05 -10.99 -0.08 7.92 16 14 O -0.53 -10.99 11.17 5.55 0.06 -10.92 16 15 N -0.59 -9.85 2.46 -175.06 -0.43 -10.28 16 16 C 0.21 4.57 4.23 -5.19 -0.02 4.55 16 17 C -0.53 -14.03 9.94 -34.44 -0.34 -14.37 16 18 H 0.07 2.18 8.06 -52.49 -0.42 1.76 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 21 Si 0.87 20.42 27.47 -169.99 -4.67 15.75 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 25 C 0.12 1.40 5.09 -4.04 -0.02 1.38 16 26 C -0.05 -0.45 5.97 -29.52 -0.18 -0.63 16 27 C 0.22 2.38 15.43 -20.77 -0.32 2.06 16 28 N -0.44 -6.12 18.53 42.14 0.78 -5.34 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.55 6.93 -51.93 -0.36 0.19 16 31 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 32 H 0.07 0.86 6.03 -51.93 -0.31 0.55 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.13 6.86 -51.93 -0.36 0.78 16 35 H 0.05 0.62 6.49 -51.93 -0.34 0.28 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.77 6.13 -51.93 -0.32 0.45 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.34 5.56 -51.93 -0.29 1.05 16 44 H 0.11 1.23 5.46 -51.93 -0.28 0.94 16 45 H 0.10 0.92 6.89 -51.93 -0.36 0.56 16 46 H 0.03 0.51 7.50 -51.93 -0.39 0.12 16 47 H 0.04 1.00 6.48 -51.93 -0.34 0.66 16 48 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.08 0.80 6.59 -51.93 -0.34 0.46 16 50 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 51 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 52 H 0.11 0.75 7.13 -51.93 -0.37 0.38 16 LS Contribution 399.59 15.07 6.02 6.02 Total: -1.00 -33.07 399.59 -7.59 -40.66 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -8.58 Total: 2.66 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.26 Total: 0.46 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.19 Total: -48.80 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.30 Total: -16.74 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.07 -7.59 -40.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593056365.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.102 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds