Wall clock time and date at job start Tue Mar 31 2020 20:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47562 * 2 1 4 4 H 1.09004 * 109.53796 * 57.96556 * 3 2 1 5 5 C 1.53092 * 109.50671 * 297.86025 * 3 2 1 6 6 O 1.43024 * 109.29276 * 183.23445 * 5 3 2 7 7 C 1.43019 * 113.73553 * 58.64379 * 6 5 3 8 8 C 1.52996 * 109.50731 * 61.26922 * 7 6 5 9 9 C 1.53004 * 109.50167 * 181.39589 * 7 6 5 10 10 C 1.53091 * 109.26114 * 301.32945 * 7 6 5 11 11 N 1.47015 * 109.54691 * 178.04800 * 3 2 1 12 12 C 1.46898 * 111.00341 * 302.31282 * 11 3 2 13 13 C 1.50695 * 109.47122 * 160.79289 * 12 11 3 14 14 O 1.21280 * 120.00196 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00087 * 179.97438 * 13 12 11 16 16 C 1.46494 * 120.00193 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47196 * 90.00308 * 16 15 13 18 18 H 1.08004 * 120.00002 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00083 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99916 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46918 * 60.00073 * 21 19 17 23 23 H 1.48507 * 109.47087 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47295 * 299.99963 * 21 19 17 25 25 C 1.46503 * 119.99647 * 0.02562 * 15 13 12 26 26 C 1.52996 * 109.46959 * 89.99718 * 25 15 13 27 27 C 1.47204 * 109.46718 * 179.97438 * 26 25 15 28 28 N 6.28215 * 108.76803 * 116.91939 * 2 1 3 29 29 H 1.09003 * 109.47550 * 185.98637 * 1 2 3 30 30 H 1.09000 * 109.46830 * 305.98410 * 1 2 3 31 31 H 1.09000 * 109.47532 * 65.98162 * 1 2 3 32 32 H 1.09005 * 109.46555 * 240.00070 * 2 1 3 33 33 H 1.09005 * 109.47362 * 120.00788 * 2 1 3 34 34 H 1.08998 * 109.50822 * 63.28120 * 5 3 2 35 35 H 1.09000 * 109.50970 * 303.18689 * 5 3 2 36 36 H 1.09001 * 109.47220 * 59.99091 * 8 7 6 37 37 H 1.08996 * 109.47301 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.46748 * 299.99984 * 8 7 6 39 39 H 1.08992 * 109.47135 * 60.00261 * 9 7 6 40 40 H 1.08998 * 109.46778 * 180.02562 * 9 7 6 41 41 H 1.08995 * 109.47250 * 299.99874 * 9 7 6 42 42 H 1.08999 * 109.51130 * 176.78429 * 10 7 6 43 43 H 1.09002 * 109.51127 * 296.87291 * 10 7 6 44 44 H 1.08998 * 109.47050 * 280.79569 * 12 11 3 45 45 H 1.08999 * 109.46782 * 40.79727 * 12 11 3 46 46 H 1.08998 * 109.47042 * 209.99977 * 16 15 13 47 47 H 1.08999 * 109.47094 * 330.00235 * 16 15 13 48 48 H 0.97003 * 119.99881 * 180.02562 * 20 19 17 49 49 H 1.08999 * 109.47187 * 209.99784 * 25 15 13 50 50 H 1.09005 * 109.47377 * 329.99754 * 25 15 13 51 51 H 1.09001 * 109.47753 * 299.99498 * 26 25 15 52 52 H 1.08993 * 109.47103 * 60.00171 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6479 1.9678 0.8709 5 6 1.5747 2.1492 -1.2758 6 8 2.1164 3.4725 -1.3073 7 6 3.5454 3.5108 -1.2640 8 6 4.1132 2.7857 -2.4857 9 6 4.0178 4.9661 -1.2673 10 6 4.0307 2.8188 0.0125 11 7 3.5095 1.4445 0.0472 12 6 3.9993 0.7254 1.2308 13 6 5.4399 0.3359 1.0214 14 8 6.0033 0.6289 -0.0118 15 7 6.1026 -0.3372 1.9828 16 6 7.5032 -0.7154 1.7796 17 6 8.3993 0.3857 2.2850 18 1 7.9685 1.2783 2.7144 19 6 9.7691 0.2543 2.1984 20 7 10.2936 -0.8323 1.6752 21 14 10.8798 1.6195 2.8244 22 1 10.6309 1.8353 4.2724 23 1 12.2996 1.2361 2.6184 24 1 10.5919 2.8721 2.0805 25 6 5.4221 -0.6906 3.2312 26 6 4.7631 -2.0633 3.0818 27 6 4.0799 -2.4186 4.3364 28 7 3.5512 -2.6929 5.3036 29 1 -0.3634 -1.0221 0.1072 30 1 -0.3633 0.6038 0.8316 31 1 -0.3634 0.4183 -0.9387 32 1 1.8932 -0.5139 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 0.4861 2.2013 -1.2866 35 1 1.9213 1.5933 -2.1470 36 1 3.7642 3.2765 -3.3942 37 1 5.2022 2.8156 -2.4524 38 1 3.7775 1.7487 -2.4812 39 1 3.6143 5.4810 -0.3955 40 1 5.1069 4.9946 -1.2347 41 1 3.6688 5.4593 -2.1745 42 1 5.1204 2.7950 0.0220 43 1 3.6710 3.3672 0.8831 44 1 3.9207 1.3703 2.1060 45 1 3.3992 -0.1713 1.3851 46 1 7.7141 -1.6349 2.3255 47 1 7.6862 -0.8737 0.7168 48 1 11.2573 -0.9249 1.6146 49 1 6.1476 -0.7225 4.0440 50 1 4.6599 0.0561 3.4536 51 1 4.0375 -2.0315 2.2690 52 1 5.5252 -2.8100 2.8595 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593056366.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:11 Heat of formation + Delta-G solvation = -47.864208 kcal Electronic energy + Delta-G solvation = -31291.157503 eV Core-core repulsion = 27291.149837 eV Total energy + Delta-G solvation = -4000.007666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.47635 -39.01611 -36.89866 -36.31910 -35.23681 -34.29737 -32.91372 -32.31609 -30.84548 -29.16996 -27.74892 -27.09308 -26.73794 -24.98090 -24.01991 -23.46513 -22.32282 -20.79931 -19.29566 -18.52195 -17.62467 -17.00718 -16.52578 -16.34231 -16.09449 -15.52605 -15.37176 -14.85091 -14.76204 -14.57455 -14.42367 -14.13808 -13.98627 -13.54501 -13.48867 -13.25612 -12.92008 -12.81292 -12.69863 -12.44709 -12.37246 -12.22611 -12.11171 -11.89765 -11.85925 -11.71224 -11.68134 -11.28792 -11.24774 -11.22185 -11.02736 -11.00259 -10.80956 -10.79967 -10.61976 -10.19524 -10.18514 -9.72985 -9.55019 -8.97507 -8.48103 -8.21039 -7.82732 -6.09787 -4.14489 2.70349 2.78291 3.28450 3.31154 3.33692 3.37290 3.41983 3.71536 3.85151 4.25249 4.40640 4.57721 4.68723 4.78749 4.92714 4.96176 5.01747 5.05773 5.09785 5.13388 5.20598 5.23950 5.26557 5.28644 5.37936 5.44654 5.50002 5.54987 5.60322 5.65853 5.72313 5.80520 5.81974 5.87372 5.91191 5.95796 5.96702 6.04702 6.06353 6.11933 6.22459 6.50072 6.80252 6.99216 7.05118 7.25094 7.36856 7.43998 7.54625 7.86291 8.16733 8.28258 8.84553 9.02872 9.51137 10.98186 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008678 B = 0.004264 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.901280 B = 6564.598893 C = 9095.253229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C 0.049 3.951 4 H 0.047 0.953 5 C 0.069 3.931 6 O -0.381 6.381 7 C 0.116 3.884 8 C -0.163 4.163 9 C -0.138 4.138 10 C 0.034 3.966 11 N -0.509 5.509 12 C 0.025 3.975 13 C 0.509 3.491 14 O -0.511 6.511 15 N -0.600 5.600 16 C 0.247 3.753 17 C -0.528 4.528 18 H 0.056 0.944 19 C 0.064 3.936 20 N -0.893 5.893 21 Si 0.895 3.105 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.118 3.882 26 C -0.051 4.051 27 C 0.217 3.783 28 N -0.445 5.445 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.035 0.965 44 H 0.059 0.941 45 H 0.102 0.898 46 H 0.033 0.967 47 H 0.046 0.954 48 H 0.264 0.736 49 H 0.094 0.906 50 H 0.072 0.928 51 H 0.105 0.895 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.757 3.471 -4.149 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.060 4.060 4 H 0.065 0.935 5 C -0.008 4.008 6 O -0.300 6.300 7 C 0.077 3.923 8 C -0.221 4.221 9 C -0.195 4.195 10 C -0.094 4.094 11 N -0.233 5.233 12 C -0.106 4.106 13 C 0.295 3.705 14 O -0.385 6.385 15 N -0.333 5.333 16 C 0.128 3.872 17 C -0.567 4.567 18 H 0.074 0.926 19 C -0.139 4.139 20 N -0.532 5.532 21 Si 0.723 3.277 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.009 4.009 26 C -0.092 4.092 27 C -0.102 4.102 28 N -0.123 5.123 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.120 0.880 46 H 0.051 0.949 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.112 0.888 50 H 0.090 0.910 51 H 0.123 0.877 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.960 3.058 -3.761 18.603 hybrid contribution 0.802 0.879 0.950 1.523 sum -17.159 3.937 -2.810 17.828 Atomic orbital electron populations 1.21805 0.95378 1.01946 1.01907 1.21635 0.95620 0.95338 1.03240 1.22376 0.88063 0.96883 0.98678 0.93518 1.22694 0.98074 0.83736 0.96305 1.87988 1.20422 1.26902 1.94694 1.21545 0.80378 0.95766 0.94582 1.22214 1.02172 1.01512 0.96156 1.21742 1.01526 0.93625 1.02619 1.22851 1.02503 0.87396 0.96609 1.61781 1.06743 1.15387 1.39436 1.22263 0.95939 1.00066 0.92289 1.20150 0.87344 0.79025 0.84025 1.90676 1.68653 1.52612 1.26593 1.48227 1.14339 1.55856 1.14921 1.19307 0.73543 0.95549 0.98753 1.21368 0.91002 1.03712 1.40644 0.92570 1.24900 0.97995 0.95801 0.95173 1.69907 1.12090 1.26675 1.44524 0.86604 0.79522 0.82374 0.79190 1.20299 1.21193 1.20204 1.21283 0.97381 0.92605 0.89601 1.19917 0.99887 1.01222 0.88195 1.29124 0.93230 0.93140 0.94660 1.81207 1.10326 1.09099 1.11631 0.92356 0.92714 0.92449 0.90553 0.91404 0.88767 0.91937 0.93059 0.91123 0.90924 0.92168 0.90669 0.91723 0.88077 0.94694 0.92276 0.88047 0.94872 0.93553 0.92624 0.88786 0.90974 0.87710 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.44 37.16 0.35 -0.72 16 2 C -0.12 -1.06 5.27 -26.73 -0.14 -1.20 16 3 C 0.05 0.52 2.09 -67.60 -0.14 0.38 16 4 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 5 C 0.07 0.74 5.50 37.21 0.20 0.94 16 6 O -0.38 -4.89 10.28 -35.23 -0.36 -5.25 16 7 C 0.12 1.50 1.11 -90.57 -0.10 1.40 16 8 C -0.16 -2.15 8.17 37.16 0.30 -1.84 16 9 C -0.14 -1.54 8.85 37.16 0.33 -1.22 16 10 C 0.03 0.48 4.01 -3.71 -0.01 0.47 16 11 N -0.51 -6.79 3.47 -227.78 -0.79 -7.58 16 12 C 0.03 0.33 3.89 -4.98 -0.02 0.31 16 13 C 0.51 9.07 7.42 -10.98 -0.08 8.99 16 14 O -0.51 -11.38 14.71 5.56 0.08 -11.29 16 15 N -0.60 -10.64 2.46 -175.06 -0.43 -11.07 16 16 C 0.25 5.73 5.16 -5.20 -0.03 5.70 16 17 C -0.53 -13.85 9.39 -34.44 -0.32 -14.17 16 18 H 0.06 1.47 7.81 -52.48 -0.41 1.06 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 21 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.12 1.53 5.17 -4.04 -0.02 1.51 16 26 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 27 C 0.22 2.54 15.43 -20.76 -0.32 2.22 16 28 N -0.45 -6.41 18.54 42.15 0.78 -5.63 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.37 6.88 -51.93 -0.36 0.01 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.57 5.91 -51.93 -0.31 0.26 16 34 H 0.09 0.82 6.80 -51.93 -0.35 0.47 16 35 H 0.06 0.68 6.50 -51.93 -0.34 0.35 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.02 6.13 -51.93 -0.32 0.70 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.70 6.72 -51.93 -0.35 1.35 16 43 H 0.03 0.48 8.13 -51.93 -0.42 0.06 16 44 H 0.06 0.73 7.25 -51.93 -0.38 0.35 16 45 H 0.10 1.06 4.45 -51.93 -0.23 0.83 16 46 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 47 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 48 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 50 H 0.07 0.79 6.44 -51.93 -0.33 0.45 16 51 H 0.10 0.85 7.22 -51.93 -0.38 0.47 16 52 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 409.52 15.07 6.17 6.17 Total: -1.00 -31.98 409.52 -7.87 -39.84 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -8.76 Total: -0.38 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -0.28 Total: 3.71 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.30 Total: -48.77 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.28 Total: -16.55 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.98 -7.87 -39.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593056366.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.020 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds