Wall clock time and date at job start Tue Mar 31 2020 20:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47562 * 2 1 4 4 H 1.09004 * 109.53796 * 57.96556 * 3 2 1 5 5 C 1.53092 * 109.50671 * 297.86025 * 3 2 1 6 6 O 1.43024 * 109.29276 * 183.23445 * 5 3 2 7 7 C 1.43019 * 113.73553 * 58.64379 * 6 5 3 8 8 C 1.52996 * 109.50731 * 61.26922 * 7 6 5 9 9 C 1.53004 * 109.50167 * 181.39589 * 7 6 5 10 10 C 1.53091 * 109.26114 * 301.32945 * 7 6 5 11 11 N 1.47015 * 109.54691 * 178.04800 * 3 2 1 12 12 C 1.46898 * 111.00341 * 302.31282 * 11 3 2 13 13 C 1.50695 * 109.47122 * 160.79289 * 12 11 3 14 14 O 1.21280 * 120.00196 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00087 * 179.97438 * 13 12 11 16 16 C 1.46494 * 120.00193 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47196 * 90.00308 * 16 15 13 18 18 H 1.08004 * 120.00002 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00083 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99916 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46918 * 60.00073 * 21 19 17 23 23 H 1.48507 * 109.47087 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47295 * 299.99963 * 21 19 17 25 25 C 1.46503 * 119.99647 * 0.02562 * 15 13 12 26 26 C 1.52996 * 109.46959 * 89.99718 * 25 15 13 27 27 C 1.47204 * 109.46718 * 179.97438 * 26 25 15 28 28 N 6.28215 * 108.76803 * 116.91939 * 2 1 3 29 29 H 1.09003 * 109.47550 * 185.98637 * 1 2 3 30 30 H 1.09000 * 109.46830 * 305.98410 * 1 2 3 31 31 H 1.09000 * 109.47532 * 65.98162 * 1 2 3 32 32 H 1.09005 * 109.46555 * 240.00070 * 2 1 3 33 33 H 1.09005 * 109.47362 * 120.00788 * 2 1 3 34 34 H 1.08998 * 109.50822 * 63.28120 * 5 3 2 35 35 H 1.09000 * 109.50970 * 303.18689 * 5 3 2 36 36 H 1.09001 * 109.47220 * 59.99091 * 8 7 6 37 37 H 1.08996 * 109.47301 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.46748 * 299.99984 * 8 7 6 39 39 H 1.08992 * 109.47135 * 60.00261 * 9 7 6 40 40 H 1.08998 * 109.46778 * 180.02562 * 9 7 6 41 41 H 1.08995 * 109.47250 * 299.99874 * 9 7 6 42 42 H 1.08999 * 109.51130 * 176.78429 * 10 7 6 43 43 H 1.09002 * 109.51127 * 296.87291 * 10 7 6 44 44 H 1.08998 * 109.47050 * 280.79569 * 12 11 3 45 45 H 1.08999 * 109.46782 * 40.79727 * 12 11 3 46 46 H 1.08998 * 109.47042 * 209.99977 * 16 15 13 47 47 H 1.08999 * 109.47094 * 330.00235 * 16 15 13 48 48 H 0.97003 * 119.99881 * 180.02562 * 20 19 17 49 49 H 1.08999 * 109.47187 * 209.99784 * 25 15 13 50 50 H 1.09005 * 109.47377 * 329.99754 * 25 15 13 51 51 H 1.09001 * 109.47753 * 299.99498 * 26 25 15 52 52 H 1.08993 * 109.47103 * 60.00171 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6479 1.9678 0.8709 5 6 1.5747 2.1492 -1.2758 6 8 2.1164 3.4725 -1.3073 7 6 3.5454 3.5108 -1.2640 8 6 4.1132 2.7857 -2.4857 9 6 4.0178 4.9661 -1.2673 10 6 4.0307 2.8188 0.0125 11 7 3.5095 1.4445 0.0472 12 6 3.9993 0.7254 1.2308 13 6 5.4399 0.3359 1.0214 14 8 6.0033 0.6289 -0.0118 15 7 6.1026 -0.3372 1.9828 16 6 7.5032 -0.7154 1.7796 17 6 8.3993 0.3857 2.2850 18 1 7.9685 1.2783 2.7144 19 6 9.7691 0.2543 2.1984 20 7 10.2936 -0.8323 1.6752 21 14 10.8798 1.6195 2.8244 22 1 10.6309 1.8353 4.2724 23 1 12.2996 1.2361 2.6184 24 1 10.5919 2.8721 2.0805 25 6 5.4221 -0.6906 3.2312 26 6 4.7631 -2.0633 3.0818 27 6 4.0799 -2.4186 4.3364 28 7 3.5512 -2.6929 5.3036 29 1 -0.3634 -1.0221 0.1072 30 1 -0.3633 0.6038 0.8316 31 1 -0.3634 0.4183 -0.9387 32 1 1.8932 -0.5139 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 0.4861 2.2013 -1.2866 35 1 1.9213 1.5933 -2.1470 36 1 3.7642 3.2765 -3.3942 37 1 5.2022 2.8156 -2.4524 38 1 3.7775 1.7487 -2.4812 39 1 3.6143 5.4810 -0.3955 40 1 5.1069 4.9946 -1.2347 41 1 3.6688 5.4593 -2.1745 42 1 5.1204 2.7950 0.0220 43 1 3.6710 3.3672 0.8831 44 1 3.9207 1.3703 2.1060 45 1 3.3992 -0.1713 1.3851 46 1 7.7141 -1.6349 2.3255 47 1 7.6862 -0.8737 0.7168 48 1 11.2573 -0.9249 1.6146 49 1 6.1476 -0.7225 4.0440 50 1 4.6599 0.0561 3.4536 51 1 4.0375 -2.0315 2.2690 52 1 5.5252 -2.8100 2.8595 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593056366.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:10 Heat of formation + Delta-G solvation = -67.736593 kcal Electronic energy + Delta-G solvation = -31292.019234 eV Core-core repulsion = 27291.149837 eV Total energy + Delta-G solvation = -4000.869397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.52279 -40.33133 -37.98209 -37.29390 -36.59543 -35.26762 -34.82440 -33.20578 -32.13814 -30.38069 -28.97521 -28.19315 -27.92187 -26.07766 -25.28487 -24.61679 -23.65870 -21.70158 -20.23699 -19.87728 -18.78800 -18.31794 -18.12576 -17.47137 -17.25562 -16.83153 -16.38479 -16.25184 -15.83032 -15.68413 -15.59390 -15.30542 -14.99074 -14.65288 -14.54028 -14.32797 -14.20838 -13.93953 -13.58109 -13.57962 -13.52584 -13.51144 -13.19065 -13.10716 -12.94384 -12.87581 -12.73885 -12.68741 -12.55686 -12.49280 -12.16693 -12.14139 -12.07444 -11.95685 -11.78187 -11.65765 -11.57630 -11.10300 -10.60739 -10.56642 -10.31829 -9.40979 -9.24868 -8.16062 -6.28117 1.40174 1.42649 1.49312 1.69926 1.84286 1.96674 2.20754 2.43904 2.76197 2.86255 3.14344 3.18905 3.69714 3.78570 3.82913 3.96233 4.01992 4.08001 4.10153 4.12795 4.25510 4.28600 4.31363 4.51184 4.54282 4.57534 4.65297 4.71587 4.75906 4.77409 4.82205 4.84891 4.89633 4.94957 5.00458 5.05289 5.08595 5.13925 5.23222 5.25751 5.34021 5.37248 5.41051 5.48201 5.63914 5.85805 5.94513 6.07273 6.15953 6.30044 6.60782 6.79461 6.86663 7.37765 7.62200 8.90158 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008678 B = 0.004264 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.901280 B = 6564.598893 C = 9095.253229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.052 3.948 4 H 0.052 0.948 5 C 0.064 3.936 6 O -0.388 6.388 7 C 0.117 3.883 8 C -0.156 4.156 9 C -0.136 4.136 10 C 0.039 3.961 11 N -0.525 5.525 12 C 0.037 3.963 13 C 0.504 3.496 14 O -0.565 6.565 15 N -0.601 5.601 16 C 0.263 3.737 17 C -0.538 4.538 18 H 0.051 0.949 19 C 0.013 3.987 20 N -0.925 5.925 21 Si 0.954 3.046 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.279 1.279 25 C 0.114 3.886 26 C -0.038 4.038 27 C 0.245 3.755 28 N -0.488 5.488 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.039 0.961 44 H 0.076 0.924 45 H 0.135 0.865 46 H 0.032 0.968 47 H 0.003 0.997 48 H 0.265 0.735 49 H 0.082 0.918 50 H 0.101 0.899 51 H 0.136 0.864 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.175 3.946 -3.309 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.056 4.056 4 H 0.070 0.930 5 C -0.013 4.013 6 O -0.307 6.307 7 C 0.078 3.922 8 C -0.213 4.213 9 C -0.193 4.193 10 C -0.090 4.090 11 N -0.250 5.250 12 C -0.093 4.093 13 C 0.292 3.708 14 O -0.442 6.442 15 N -0.333 5.333 16 C 0.142 3.858 17 C -0.577 4.577 18 H 0.070 0.930 19 C -0.186 4.186 20 N -0.565 5.565 21 Si 0.780 3.220 22 H -0.189 1.189 23 H -0.208 1.208 24 H -0.205 1.205 25 C -0.011 4.011 26 C -0.079 4.079 27 C -0.072 4.072 28 N -0.166 5.166 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.153 0.847 46 H 0.050 0.950 47 H 0.021 0.979 48 H 0.074 0.926 49 H 0.101 0.899 50 H 0.119 0.881 51 H 0.153 0.847 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.425 3.526 -2.882 20.926 hybrid contribution 1.535 0.715 0.640 1.810 sum -18.890 4.241 -2.242 19.489 Atomic orbital electron populations 1.21779 0.93780 1.02674 1.02415 1.21629 0.96927 0.93742 1.03198 1.22458 0.86026 0.98359 0.98783 0.93014 1.22898 0.99354 0.82837 0.96165 1.87980 1.19888 1.28184 1.94672 1.21517 0.80729 0.96375 0.93580 1.22126 1.00828 1.01130 0.97249 1.21738 1.01360 0.92802 1.03439 1.22709 1.00428 0.88309 0.97505 1.61716 1.08629 1.14858 1.39773 1.22211 0.92577 1.01735 0.92796 1.21034 0.89108 0.77728 0.82949 1.90658 1.70235 1.54494 1.28850 1.48091 1.12585 1.55856 1.16768 1.18739 0.76560 0.94750 0.95725 1.21708 0.91754 1.04141 1.40051 0.93043 1.25683 0.99563 0.97860 0.95513 1.70015 1.12311 1.28392 1.45813 0.85670 0.77784 0.79405 0.79166 1.18908 1.20805 1.20518 1.21487 0.97635 0.95087 0.86888 1.19839 1.00398 0.99343 0.88314 1.29137 0.92051 0.91909 0.94089 1.81253 1.12033 1.10456 1.12853 0.91543 0.92260 0.91929 0.91405 0.90592 0.86318 0.92471 0.91704 0.93111 0.92046 0.91576 0.91024 0.90662 0.91580 0.94267 0.90635 0.84719 0.94987 0.97868 0.92638 0.89915 0.88063 0.84652 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.44 71.98 0.68 -0.89 16 2 C -0.12 -1.69 5.27 30.59 0.16 -1.53 16 3 C 0.05 0.98 2.09 44.92 0.09 1.07 16 4 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 5 C 0.06 1.23 5.50 72.01 0.40 1.62 16 6 O -0.39 -9.29 10.28 -148.98 -1.53 -10.82 16 7 C 0.12 2.97 1.11 -10.76 -0.01 2.95 16 8 C -0.16 -4.17 8.17 71.98 0.59 -3.58 16 9 C -0.14 -2.97 8.85 71.98 0.64 -2.33 16 10 C 0.04 1.09 4.01 86.31 0.35 1.43 16 11 N -0.52 -13.36 3.47 -874.56 -3.03 -16.40 16 12 C 0.04 0.90 3.89 85.56 0.33 1.23 16 13 C 0.50 17.88 7.42 87.65 0.65 18.53 16 14 O -0.56 -26.14 14.71 -3.03 -0.04 -26.19 16 15 N -0.60 -21.11 2.46 -826.17 -2.03 -23.14 16 16 C 0.26 12.57 5.16 85.63 0.44 13.01 16 17 C -0.54 -28.75 9.39 25.60 0.24 -28.51 16 18 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 19 C 0.01 0.72 5.46 84.66 0.46 1.18 16 20 N -0.93 -53.48 13.29 21.45 0.28 -53.19 16 21 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 25 C 0.11 2.72 5.17 86.38 0.45 3.17 16 26 C -0.04 -0.66 6.03 28.79 0.17 -0.49 16 27 C 0.25 5.14 15.43 89.44 1.38 6.52 16 28 N -0.49 -13.12 18.54 20.01 0.37 -12.75 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.60 6.88 -2.39 -0.02 0.58 16 32 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.08 0.96 5.91 -2.38 -0.01 0.95 16 34 H 0.12 1.69 6.80 -2.39 -0.02 1.67 16 35 H 0.06 1.17 6.50 -2.39 -0.02 1.15 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.76 6.13 -2.39 -0.01 1.74 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.07 2.32 6.72 -2.39 -0.02 2.31 16 43 H 0.04 1.04 8.13 -2.39 -0.02 1.02 16 44 H 0.08 1.62 7.25 -2.39 -0.02 1.60 16 45 H 0.14 2.30 4.45 -2.39 -0.01 2.29 16 46 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 47 H 0.00 0.18 7.42 -2.39 -0.02 0.16 16 48 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 49 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 50 H 0.10 1.86 6.44 -2.38 -0.02 1.85 16 51 H 0.14 1.62 7.22 -2.39 -0.02 1.60 16 52 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -72.44 409.52 3.97 -68.48 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.90 Total: 15.18 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 7.02 Total: 13.38 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -4.41 Total: -105.48 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -1.58 Total: -37.01 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -72.44 3.97 -68.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593056366.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.740 kcal (2) G-P(sol) polarization free energy of solvation -72.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds