Wall clock time and date at job start Tue Mar 31 2020 20:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46843 * 2 1 4 4 H 1.08994 * 109.54723 * 57.99531 * 3 2 1 5 5 C 1.53102 * 109.50570 * 297.88408 * 3 2 1 6 6 O 1.43023 * 109.25818 * 183.21551 * 5 3 2 7 7 C 1.43016 * 113.73338 * 58.67369 * 6 5 3 8 8 H 1.09003 * 109.50862 * 61.26576 * 7 6 5 9 9 C 1.53003 * 109.50411 * 181.34993 * 7 6 5 10 10 C 1.53005 * 109.46846 * 294.99959 * 9 7 6 11 11 C 1.53096 * 109.25989 * 301.32734 * 7 6 5 12 12 N 1.47015 * 109.25732 * 56.85344 * 11 7 6 13 13 C 1.46902 * 110.99968 * 177.60594 * 12 11 7 14 14 C 1.50693 * 109.47185 * 284.49164 * 13 12 11 15 15 O 1.21281 * 120.00070 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00097 * 179.97438 * 14 13 12 17 17 C 1.46497 * 120.00105 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47163 * 90.00133 * 17 16 14 19 19 H 1.07997 * 119.99873 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00347 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99444 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00436 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46943 * 60.00074 * 22 20 18 24 24 H 1.48496 * 109.47351 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47189 * 300.00033 * 22 20 18 26 26 C 1.46502 * 119.99992 * 0.02562 * 16 14 13 27 27 C 1.52991 * 109.47274 * 89.99721 * 26 16 14 28 28 C 1.47200 * 109.47583 * 180.02562 * 27 26 16 29 29 N 6.28109 * 108.79964 * 116.99158 * 2 1 3 30 30 H 1.08996 * 109.47405 * 306.00135 * 1 2 3 31 31 H 1.09003 * 109.47549 * 66.00259 * 1 2 3 32 32 H 1.08997 * 109.47317 * 185.99678 * 1 2 3 33 33 H 1.08996 * 109.47112 * 239.99820 * 2 1 3 34 34 H 1.08994 * 109.47069 * 119.99577 * 2 1 3 35 35 H 1.09002 * 109.50665 * 63.28574 * 5 3 2 36 36 H 1.08993 * 109.51434 * 303.15421 * 5 3 2 37 37 H 1.08992 * 109.47183 * 54.99821 * 9 7 6 38 38 H 1.09007 * 109.47064 * 175.00261 * 9 7 6 39 39 H 1.09003 * 109.46738 * 180.02562 * 10 9 7 40 40 H 1.09001 * 109.46981 * 299.99728 * 10 9 7 41 41 H 1.08990 * 109.47100 * 60.00452 * 10 9 7 42 42 H 1.09002 * 109.50232 * 176.78358 * 11 7 6 43 43 H 1.08994 * 109.50440 * 296.86920 * 11 7 6 44 44 H 1.09005 * 109.46975 * 44.49280 * 13 12 11 45 45 H 1.08999 * 109.47108 * 164.49013 * 13 12 11 46 46 H 1.09003 * 109.47302 * 209.99798 * 17 16 14 47 47 H 1.08998 * 109.46906 * 330.00076 * 17 16 14 48 48 H 0.97003 * 120.00024 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.47277 * 210.00547 * 26 16 14 50 50 H 1.09006 * 109.46640 * 329.99903 * 26 16 14 51 51 H 1.09006 * 109.47572 * 300.00693 * 27 26 16 52 52 H 1.09003 * 109.47297 * 59.99975 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6482 1.9678 0.8710 5 6 1.5740 2.1494 -1.2756 6 8 2.1155 3.4728 -1.3062 7 6 3.5445 3.5111 -1.2636 8 1 3.9486 2.9953 -2.1346 9 6 4.0168 4.9664 -1.2670 10 6 3.6341 5.6237 -2.5946 11 6 4.0305 2.8180 0.0121 12 7 3.5094 1.4437 0.0458 13 6 3.9998 0.7236 1.2285 14 6 5.4404 0.3347 1.0183 15 8 6.0034 0.6289 -0.0149 16 7 6.1037 -0.3391 1.9788 17 6 7.5043 -0.7167 1.7747 18 6 8.4003 0.3843 2.2809 19 1 7.9694 1.2762 2.7112 20 6 9.7701 0.2534 2.1937 21 7 10.2947 -0.8321 1.6683 22 14 10.8806 1.6183 2.8206 23 1 10.6322 1.8327 4.2689 24 1 12.3004 1.2361 2.6126 25 1 10.5921 2.8715 2.0780 26 6 5.4238 -0.6940 3.2271 27 6 4.7651 -2.0667 3.0767 28 6 4.0815 -2.4231 4.3306 29 7 3.5541 -2.6986 5.2983 30 1 -0.3634 0.6040 0.8313 31 1 -0.3634 0.4179 -0.9388 32 1 -0.3634 -1.0220 0.1074 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 0.4852 2.2014 -1.2859 36 1 1.9207 1.5941 -2.1470 37 1 3.5433 5.5040 -0.4456 38 1 5.0996 4.9973 -1.1451 39 1 3.9710 6.6603 -2.5972 40 1 4.1077 5.0860 -3.4160 41 1 2.5514 5.5929 -2.7164 42 1 5.1202 2.7944 0.0208 43 1 3.6712 3.3657 0.8833 44 1 3.9214 1.3677 2.1044 45 1 3.4000 -0.1735 1.3823 46 1 7.7158 -1.6367 2.3197 47 1 7.6870 -0.8739 0.7117 48 1 11.2584 -0.9245 1.6073 49 1 6.1496 -0.7263 4.0396 50 1 4.6614 0.0523 3.4504 51 1 4.0393 -2.0344 2.2640 52 1 5.5275 -2.8130 2.8533 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593058476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:55 Heat of formation + Delta-G solvation = -54.176148 kcal Electronic energy + Delta-G solvation = -30817.364375 eV Core-core repulsion = 26817.083003 eV Total energy + Delta-G solvation = -4000.281372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.27831 -38.94913 -36.89702 -36.30780 -35.24131 -34.34307 -33.04754 -32.84107 -30.84846 -29.35699 -28.80747 -27.16846 -25.05250 -24.99952 -24.00863 -22.67770 -22.12902 -21.02838 -20.11055 -18.52543 -17.63418 -17.04217 -16.60451 -16.45594 -16.14126 -15.59088 -15.41948 -14.81837 -14.73003 -14.67959 -14.43783 -14.19535 -14.00592 -13.64893 -13.53720 -13.44717 -13.20979 -12.96048 -12.86762 -12.58104 -12.44710 -12.22229 -12.20232 -11.90250 -11.84004 -11.69002 -11.39494 -11.28061 -11.09374 -11.03298 -11.02591 -10.97934 -10.87323 -10.79785 -10.61961 -10.30253 -10.19604 -9.73188 -9.58718 -8.99694 -8.48073 -8.24784 -7.83348 -6.09764 -4.14519 2.70165 2.78164 3.28455 3.30628 3.33806 3.36689 3.41156 3.71224 3.83826 4.24361 4.40539 4.56497 4.66410 4.75441 4.92139 4.96114 5.03271 5.06293 5.09242 5.14204 5.19412 5.21770 5.25893 5.26517 5.33689 5.35386 5.42455 5.49786 5.50341 5.61438 5.65192 5.78210 5.80237 5.81212 5.83626 5.93441 5.94120 5.99785 6.04679 6.07302 6.16693 6.27040 6.78664 6.96706 7.03547 7.19856 7.36668 7.43646 7.54526 7.86277 8.16612 8.27632 8.84366 9.02193 9.51089 10.98244 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008011 B = 0.004138 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3494.529913 B = 6764.997399 C = 9641.228652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C 0.048 3.952 4 H 0.048 0.952 5 C 0.072 3.928 6 O -0.383 6.383 7 C 0.096 3.904 8 H 0.070 0.930 9 C -0.116 4.116 10 C -0.147 4.147 11 C 0.027 3.973 12 N -0.512 5.512 13 C 0.026 3.974 14 C 0.509 3.491 15 O -0.512 6.512 16 N -0.600 5.600 17 C 0.247 3.753 18 C -0.529 4.529 19 H 0.056 0.944 20 C 0.064 3.936 21 N -0.893 5.893 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.118 3.882 27 C -0.051 4.051 28 C 0.217 3.783 29 N -0.445 5.445 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.036 0.964 44 H 0.060 0.940 45 H 0.102 0.898 46 H 0.034 0.966 47 H 0.046 0.954 48 H 0.264 0.736 49 H 0.094 0.906 50 H 0.072 0.928 51 H 0.105 0.895 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.066 4.206 -4.100 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.060 4.060 4 H 0.066 0.934 5 C -0.005 4.005 6 O -0.303 6.303 7 C 0.038 3.962 8 H 0.088 0.912 9 C -0.154 4.154 10 C -0.204 4.204 11 C -0.101 4.101 12 N -0.237 5.237 13 C -0.105 4.105 14 C 0.295 3.705 15 O -0.387 6.387 16 N -0.333 5.333 17 C 0.128 3.872 18 C -0.568 4.568 19 H 0.074 0.926 20 C -0.139 4.139 21 N -0.532 5.532 22 Si 0.723 3.277 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.009 4.009 27 C -0.092 4.092 28 C -0.102 4.102 29 N -0.122 5.122 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.119 0.881 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.120 0.880 46 H 0.052 0.948 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.112 0.888 50 H 0.090 0.910 51 H 0.123 0.877 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.272 3.791 -3.711 19.026 hybrid contribution 0.827 0.850 0.950 1.519 sum -17.445 4.641 -2.761 18.261 Atomic orbital electron populations 1.21805 0.95351 1.01968 1.01909 1.21638 0.95640 0.95327 1.03271 1.22384 0.88019 0.96937 0.98701 0.93439 1.22681 0.98241 0.83403 0.96195 1.87943 1.20624 1.26867 1.94816 1.22207 0.80625 0.96124 0.97223 0.91183 1.21525 1.01332 0.93597 0.98957 1.21688 1.01996 0.99913 0.96816 1.22878 1.02546 0.87417 0.97263 1.61800 1.06798 1.15371 1.39690 1.22258 0.95913 1.00062 0.92256 1.20153 0.87349 0.79027 0.84016 1.90679 1.68708 1.52661 1.26630 1.48229 1.14346 1.55782 1.14961 1.19315 0.73526 0.95577 0.98767 1.21367 0.91011 1.03761 1.40623 0.92558 1.24902 0.97994 0.95813 0.95167 1.69908 1.12094 1.26738 1.44449 0.86599 0.79515 0.82365 0.79187 1.20287 1.21186 1.20202 1.21285 0.97401 0.92610 0.89582 1.19916 0.99887 1.01208 0.88220 1.29121 0.93236 0.93145 0.94652 1.81210 1.10347 1.09091 1.11600 0.92704 0.92440 0.92341 0.90520 0.91400 0.88634 0.92273 0.91406 0.90179 0.92889 0.92775 0.92155 0.88088 0.94567 0.92221 0.88019 0.94836 0.93550 0.92617 0.88759 0.90964 0.87716 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.44 37.16 0.35 -0.72 16 2 C -0.12 -1.07 5.27 -26.73 -0.14 -1.21 16 3 C 0.05 0.52 2.09 -67.60 -0.14 0.38 16 4 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 5 C 0.07 0.76 5.90 37.21 0.22 0.98 16 6 O -0.38 -4.80 10.01 -35.23 -0.35 -5.16 16 7 C 0.10 1.23 2.80 -26.68 -0.07 1.16 16 8 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 9 C -0.12 -1.30 5.65 -26.73 -0.15 -1.45 16 10 C -0.15 -1.46 9.81 37.16 0.36 -1.10 16 11 C 0.03 0.38 4.60 -3.71 -0.02 0.36 16 12 N -0.51 -6.96 4.10 -227.77 -0.93 -7.90 16 13 C 0.03 0.34 3.89 -4.98 -0.02 0.32 16 14 C 0.51 9.19 7.42 -10.99 -0.08 9.10 16 15 O -0.51 -11.63 14.70 5.56 0.08 -11.55 16 16 N -0.60 -10.72 2.46 -175.06 -0.43 -11.15 16 17 C 0.25 5.75 5.16 -5.19 -0.03 5.73 16 18 C -0.53 -13.91 9.39 -34.44 -0.32 -14.23 16 19 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 22 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.12 1.53 5.17 -4.05 -0.02 1.51 16 27 C -0.05 -0.51 6.02 -29.52 -0.18 -0.69 16 28 C 0.22 2.54 15.43 -20.76 -0.32 2.22 16 29 N -0.45 -6.41 18.54 42.15 0.78 -5.63 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.37 6.88 -51.93 -0.36 0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.58 5.91 -51.93 -0.31 0.27 16 35 H 0.10 0.81 6.80 -51.93 -0.35 0.46 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 42 H 0.10 1.70 6.72 -51.93 -0.35 1.35 16 43 H 0.04 0.49 8.13 -51.93 -0.42 0.07 16 44 H 0.06 0.74 7.25 -51.93 -0.38 0.36 16 45 H 0.10 1.08 4.45 -51.93 -0.23 0.85 16 46 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 47 H 0.05 1.24 7.42 -51.93 -0.39 0.86 16 48 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 50 H 0.07 0.79 6.44 -51.93 -0.33 0.45 16 51 H 0.10 0.85 7.22 -51.93 -0.38 0.48 16 52 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 414.33 15.07 6.24 6.24 Total: -1.00 -32.24 414.33 -8.48 -40.73 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.93 Total: -1.06 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.66 Total: 3.99 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.15 Total: -49.21 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.27 Total: -16.70 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.24 -8.48 -40.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593058476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.449 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds