Wall clock time and date at job start Tue Mar 31 2020 20:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47104 * 2 1 4 4 H 1.09002 * 109.54338 * 54.89648 * 3 2 1 5 5 C 1.53103 * 109.50642 * 174.99915 * 3 2 1 6 6 N 1.47018 * 109.25802 * 176.78492 * 5 3 2 7 7 C 1.46896 * 110.99889 * 177.61009 * 6 5 3 8 8 C 1.50705 * 109.47140 * 292.98702 * 7 6 5 9 9 O 1.21284 * 119.99740 * 354.26586 * 8 7 6 10 10 N 1.34776 * 119.99955 * 173.98176 * 8 7 6 11 11 C 1.46497 * 119.99972 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47090 * 90.00321 * 11 10 8 13 13 H 1.07994 * 119.99772 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99630 * 179.97438 * 12 11 10 15 15 N 1.31524 * 119.99411 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00587 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47028 * 89.99520 * 16 14 12 18 18 H 1.48497 * 109.47226 * 209.99576 * 16 14 12 19 19 H 1.48499 * 109.47078 * 329.99931 * 16 14 12 20 20 C 1.46500 * 120.00113 * 0.02562 * 10 8 7 21 21 C 1.52998 * 109.47668 * 89.99333 * 20 10 8 22 22 C 1.47202 * 109.47002 * 180.02562 * 21 20 10 23 23 N 9.03520 * 163.73729 * 16.03314 * 3 1 2 24 24 C 1.47017 * 110.75273 * 301.38507 * 6 5 3 25 25 H 1.09000 * 109.50493 * 178.55233 * 24 6 5 26 26 C 1.52997 * 109.50703 * 298.68242 * 24 6 5 27 27 C 1.53004 * 109.47305 * 182.91364 * 26 24 6 28 28 C 1.53099 * 109.25647 * 58.61784 * 24 6 5 29 29 O 1.43018 * 109.25788 * 303.14643 * 28 24 6 30 30 H 1.09003 * 109.47244 * 300.00256 * 1 2 3 31 31 H 1.09007 * 109.47345 * 59.99601 * 1 2 3 32 32 H 1.08999 * 109.47410 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47228 * 240.00301 * 2 1 3 34 34 H 1.08999 * 109.47474 * 120.00106 * 2 1 3 35 35 H 1.08998 * 109.50427 * 56.85480 * 5 3 2 36 36 H 1.08998 * 109.54576 * 296.74124 * 5 3 2 37 37 H 1.09002 * 109.47305 * 172.98748 * 7 6 5 38 38 H 1.08996 * 109.47325 * 52.98627 * 7 6 5 39 39 H 1.08998 * 109.47342 * 210.00936 * 11 10 8 40 40 H 1.09008 * 109.47302 * 330.00348 * 11 10 8 41 41 H 0.97005 * 119.99562 * 180.02562 * 15 14 12 42 42 H 1.09006 * 109.46894 * 209.99468 * 20 10 8 43 43 H 1.08998 * 109.47005 * 329.99015 * 20 10 8 44 44 H 1.08999 * 109.46735 * 300.00258 * 21 20 10 45 45 H 1.09000 * 109.46663 * 59.99854 * 21 20 10 46 46 H 1.08998 * 109.47289 * 302.90925 * 26 24 6 47 47 H 1.09000 * 109.47333 * 62.91012 * 26 24 6 48 48 H 1.08997 * 109.47481 * 174.63682 * 27 26 24 49 49 H 1.09005 * 109.46634 * 294.63528 * 27 26 24 50 50 H 1.08999 * 109.47006 * 54.62955 * 27 26 24 51 51 H 1.09004 * 109.50380 * 183.21943 * 28 24 6 52 52 H 1.08993 * 109.51031 * 63.08536 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6045 1.9832 0.8404 5 6 3.5658 1.4453 0.1258 6 7 4.0562 2.8290 0.0478 7 6 5.5140 2.8814 0.2213 8 6 5.8671 2.4765 1.6293 9 8 4.9885 2.2749 2.4407 10 7 7.1591 2.3329 1.9852 11 6 7.5024 1.9388 3.3538 12 6 7.5734 0.4360 3.4409 13 1 7.3824 -0.1653 2.5644 14 6 7.8833 -0.1712 4.6394 15 7 7.9448 -1.4828 4.7154 16 14 8.2144 0.8689 6.1552 17 1 6.9419 1.0988 6.8854 18 1 9.1728 0.1609 7.0416 19 1 8.7917 2.1737 5.7438 20 6 8.2202 2.5709 1.0035 21 6 8.6370 4.0423 1.0495 22 6 9.7027 4.2814 0.0626 23 7 10.5259 4.4649 -0.6988 24 6 3.6539 3.4536 -1.2209 25 1 4.0053 4.4850 -1.2463 26 6 4.2637 2.6762 -2.3890 27 6 3.9047 3.3686 -3.7053 28 6 2.1272 3.4307 -1.3331 29 8 1.6664 2.0812 -1.2239 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9988 0.8594 -0.6849 36 1 3.8535 1.0106 1.0830 37 1 5.8657 3.8964 0.0360 38 1 5.9885 2.1982 -0.4830 39 1 8.4691 2.3644 3.6228 40 1 6.7397 2.3069 4.0401 41 1 8.1624 -1.9099 5.5587 42 1 9.0794 1.9423 1.2376 43 1 7.8535 2.3282 0.0062 44 1 7.7778 4.6708 0.8154 45 1 9.0037 4.2849 2.0469 46 1 5.3477 2.6455 -2.2786 47 1 3.8702 1.6597 -2.3940 48 1 4.4166 2.8711 -4.5290 49 1 2.8273 3.3151 -3.8618 50 1 4.2142 4.4129 -3.6627 51 1 1.8270 3.8408 -2.2974 52 1 1.6943 4.0291 -0.5316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593058477.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:58 Heat of formation + Delta-G solvation = -49.302189 kcal Electronic energy + Delta-G solvation = -31022.887157 eV Core-core repulsion = 27022.817135 eV Total energy + Delta-G solvation = -4000.070021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.48986 -39.10142 -36.96517 -36.17634 -35.34702 -34.23025 -32.90355 -32.63021 -31.04887 -29.47465 -29.00795 -27.61291 -25.16367 -24.63868 -24.05985 -23.10849 -22.16206 -21.22544 -19.16260 -18.52899 -17.77873 -17.03598 -16.84333 -16.57587 -16.26491 -15.72553 -15.48396 -15.24751 -14.77481 -14.62114 -14.26919 -14.07306 -13.97125 -13.70319 -13.60900 -13.54484 -13.20301 -12.99351 -12.61532 -12.57557 -12.52860 -12.27760 -12.17130 -11.97917 -11.85933 -11.74266 -11.62608 -11.56865 -11.27090 -11.10200 -11.01130 -10.97491 -10.88877 -10.69959 -10.58788 -10.26961 -10.17984 -9.64182 -9.60023 -9.06676 -8.64747 -8.21635 -7.92456 -6.14565 -4.14215 2.63761 2.72400 3.18365 3.24448 3.29423 3.31949 3.38102 3.73728 3.82811 4.16015 4.33966 4.64990 4.69168 4.74365 4.85397 4.94159 5.00413 5.03349 5.08346 5.14830 5.15683 5.19881 5.26169 5.30576 5.34299 5.38210 5.40817 5.48326 5.51446 5.58442 5.68280 5.70338 5.82065 5.84525 5.89337 5.95046 5.97660 6.00277 6.08366 6.12061 6.23216 6.32669 6.54475 6.80816 6.92169 6.99157 7.18477 7.23051 7.48670 7.53350 8.06663 8.39274 8.83807 8.89810 9.45176 10.98628 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008849 B = 0.004072 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.430322 B = 6875.175124 C = 9372.088680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.098 3.902 4 H 0.068 0.932 5 C 0.019 3.981 6 N -0.510 5.510 7 C 0.033 3.967 8 C 0.510 3.490 9 O -0.512 6.512 10 N -0.594 5.594 11 C 0.216 3.784 12 C -0.531 4.531 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.896 5.896 16 Si 0.875 3.125 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.265 1.265 20 C 0.117 3.883 21 C -0.051 4.051 22 C 0.215 3.785 23 N -0.442 5.442 24 C 0.047 3.953 25 H 0.090 0.910 26 C -0.156 4.156 27 C -0.147 4.147 28 C 0.071 3.929 29 O -0.380 6.380 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.040 0.960 41 H 0.265 0.735 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.052 0.948 49 H 0.058 0.942 50 H 0.052 0.948 51 H 0.096 0.904 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 10.625 -13.034 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.040 3.960 4 H 0.086 0.914 5 C -0.109 4.109 6 N -0.234 5.234 7 C -0.098 4.098 8 C 0.296 3.704 9 O -0.387 6.387 10 N -0.327 5.327 11 C 0.096 3.904 12 C -0.569 4.569 13 H 0.092 0.908 14 C -0.129 4.129 15 N -0.534 5.534 16 Si 0.702 3.298 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.009 4.009 21 C -0.092 4.092 22 C -0.103 4.103 23 N -0.119 5.119 24 C -0.062 4.062 25 H 0.108 0.892 26 C -0.195 4.195 27 C -0.204 4.204 28 C -0.006 4.006 29 O -0.299 6.299 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.125 0.875 45 H 0.134 0.866 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.072 0.928 51 H 0.114 0.886 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.825 10.797 -13.310 19.278 hybrid contribution 0.718 0.012 0.675 0.985 sum -8.108 10.809 -12.635 18.499 Atomic orbital electron populations 1.21684 0.95242 1.01347 1.02078 1.21524 0.96635 0.94286 1.03007 1.22181 0.92961 0.93945 0.86900 0.91395 1.22962 0.95640 0.88803 1.03492 1.62073 1.10633 1.18743 1.31904 1.22126 0.89391 1.02513 0.95754 1.20200 0.82706 0.78173 0.89312 1.90678 1.46754 1.48824 1.52424 1.47897 1.04191 1.67371 1.13208 1.19707 0.95940 0.96702 0.78076 1.21287 1.48329 0.89556 0.97760 0.90765 1.24852 0.94678 0.94816 0.98552 1.69897 1.48524 1.08530 1.26436 0.86873 0.78715 0.80698 0.83517 1.19887 1.21146 1.18996 1.21330 0.93490 0.92625 0.93500 1.19898 0.93029 1.00423 0.95857 1.29078 0.94118 0.93204 0.93892 1.81232 1.10945 1.08761 1.11001 1.22507 0.96970 0.99077 0.87614 0.89181 1.22144 1.00694 1.01231 0.95475 1.21727 1.01699 1.00208 0.96811 1.22618 0.91788 0.84283 1.01922 1.87938 1.76691 1.25994 1.39241 0.92853 0.92216 0.92891 0.91398 0.90095 0.94135 0.87650 0.88359 0.91989 0.95075 0.94241 0.92515 0.88521 0.90533 0.87524 0.86608 0.92007 0.90861 0.92878 0.92321 0.92847 0.88583 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.81 37.15 0.36 -1.15 16 2 C -0.12 -1.37 5.64 -26.73 -0.15 -1.52 16 3 C 0.10 1.26 2.80 -26.68 -0.07 1.19 16 4 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 5 C 0.02 0.27 4.19 -3.71 -0.02 0.25 16 6 N -0.51 -6.73 4.36 -227.77 -0.99 -7.72 16 7 C 0.03 0.42 3.52 -4.98 -0.02 0.40 16 8 C 0.51 8.85 7.26 -10.98 -0.08 8.77 16 9 O -0.51 -11.17 14.28 5.55 0.08 -11.09 16 10 N -0.59 -10.14 2.46 -175.06 -0.43 -10.57 16 11 C 0.22 4.65 4.23 -5.20 -0.02 4.62 16 12 C -0.53 -14.07 9.94 -34.44 -0.34 -14.41 16 13 H 0.07 2.18 8.06 -52.49 -0.42 1.75 16 14 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -26.52 13.96 55.43 0.77 -25.75 16 16 Si 0.88 20.40 27.47 -169.99 -4.67 15.73 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -5.70 6.54 56.52 0.37 -5.33 16 20 C 0.12 1.45 5.19 -4.04 -0.02 1.43 16 21 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 22 C 0.22 2.41 15.43 -20.75 -0.32 2.09 16 23 N -0.44 -6.19 18.54 42.16 0.78 -5.41 16 24 C 0.05 0.48 2.46 -67.60 -0.17 0.32 16 25 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 26 C -0.16 -1.51 4.65 -26.73 -0.12 -1.63 16 27 C -0.15 -1.15 9.49 37.16 0.35 -0.80 16 28 C 0.07 0.72 6.21 37.21 0.23 0.95 16 29 O -0.38 -4.63 9.42 -35.23 -0.33 -4.96 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.62 7.83 -51.92 -0.41 0.22 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.04 0.57 6.45 -51.93 -0.34 0.23 16 36 H 0.11 1.87 6.14 -51.93 -0.32 1.55 16 37 H 0.10 0.97 7.29 -51.93 -0.38 0.59 16 38 H 0.06 0.73 5.79 -51.93 -0.30 0.43 16 39 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 40 H 0.04 0.92 6.85 -51.92 -0.36 0.57 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 43 H 0.08 0.81 6.28 -51.93 -0.33 0.48 16 44 H 0.11 0.77 7.41 -51.93 -0.38 0.39 16 45 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 47 H 0.07 0.83 6.14 -51.93 -0.32 0.52 16 48 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 0.45 6.72 -51.93 -0.35 0.10 16 50 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.10 0.78 6.49 -51.93 -0.34 0.44 16 52 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 406.45 15.07 6.13 6.13 Total: -1.00 -32.96 406.45 -8.08 -41.04 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.76 Total: 0.79 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.66 Total: 1.81 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.13 Total: -49.45 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.25 Total: -16.05 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.96 -8.08 -41.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593058477.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.262 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds