Wall clock time and date at job start Tue Mar 31 2020 20:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46987 * 2 1 4 4 H 1.09000 * 109.50601 * 304.99688 * 3 2 1 5 5 C 1.53104 * 109.50807 * 184.91532 * 3 2 1 6 6 N 1.47006 * 109.25882 * 183.21462 * 5 3 2 7 7 C 1.46906 * 110.99816 * 182.38907 * 6 5 3 8 8 C 1.50703 * 109.47120 * 66.98109 * 7 6 5 9 9 O 1.21280 * 119.99607 * 6.94111 * 8 7 6 10 10 N 1.34776 * 119.99759 * 186.94167 * 8 7 6 11 11 C 1.46504 * 119.99478 * 185.36559 * 10 8 7 12 12 C 1.50701 * 109.47099 * 85.10152 * 11 10 8 13 13 H 1.07999 * 120.00076 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99954 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00267 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00100 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47175 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47106 * 119.99959 * 16 14 12 19 19 H 1.48500 * 109.47093 * 240.00134 * 16 14 12 20 20 C 1.46498 * 120.00203 * 5.36426 * 10 8 7 21 21 C 1.53000 * 109.47010 * 89.99946 * 20 10 8 22 22 C 1.47198 * 109.47098 * 179.97438 * 21 20 10 23 23 N 9.01498 * 167.82022 * 50.06695 * 2 1 3 24 24 C 1.47012 * 110.75413 * 58.61384 * 6 5 3 25 25 H 1.09009 * 109.50708 * 181.44607 * 24 6 5 26 26 C 1.52996 * 109.50700 * 61.32142 * 24 6 5 27 27 C 1.53006 * 109.47123 * 174.22151 * 26 24 6 28 28 C 1.53092 * 109.25965 * 301.38220 * 24 6 5 29 29 O 1.43015 * 109.51161 * 65.08706 * 3 2 1 30 30 H 1.08994 * 109.46845 * 60.00535 * 1 2 3 31 31 H 1.09003 * 109.46844 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47382 * 300.00089 * 1 2 3 33 33 H 1.09008 * 109.46674 * 119.99534 * 2 1 3 34 34 H 1.08997 * 109.46847 * 239.99400 * 2 1 3 35 35 H 1.09003 * 109.50384 * 303.14852 * 5 3 2 36 36 H 1.08995 * 109.50721 * 63.22863 * 5 3 2 37 37 H 1.09000 * 109.46951 * 186.98183 * 7 6 5 38 38 H 1.09000 * 109.46921 * 306.98198 * 7 6 5 39 39 H 1.09002 * 109.47016 * 205.09810 * 11 10 8 40 40 H 1.08992 * 109.47237 * 325.10170 * 11 10 8 41 41 H 0.96998 * 120.00624 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.46949 * 210.00403 * 20 10 8 43 43 H 1.09000 * 109.46838 * 329.99965 * 20 10 8 44 44 H 1.08994 * 109.47080 * 300.00417 * 21 20 10 45 45 H 1.09003 * 109.46578 * 60.00232 * 21 20 10 46 46 H 1.09005 * 109.46853 * 294.21433 * 26 24 6 47 47 H 1.08997 * 109.47890 * 54.21668 * 26 24 6 48 48 H 1.09002 * 109.47258 * 65.70084 * 27 26 24 49 49 H 1.09003 * 109.47176 * 185.69518 * 27 26 24 50 50 H 1.08992 * 109.47145 * 305.69920 * 27 26 24 51 51 H 1.09000 * 109.51109 * 176.78821 * 28 24 6 52 52 H 1.09011 * 109.50727 * 296.87197 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9820 -0.8417 5 6 3.5660 1.4453 -0.1237 6 7 4.0563 2.8290 -0.0456 7 6 5.5144 2.8813 -0.2171 8 6 5.8696 2.4749 -1.6242 9 8 4.9930 2.2937 -2.4425 10 7 7.1613 2.3129 -1.9730 11 6 7.5139 2.0335 -3.3672 12 6 7.6237 3.3302 -4.1272 13 1 7.4480 4.2686 -3.6223 14 6 7.9485 3.3186 -5.4671 15 7 8.1631 2.1760 -6.0819 16 14 8.0839 4.9259 -6.4093 17 1 7.7969 6.0609 -5.4958 18 1 9.4577 5.0650 -6.9560 19 1 7.1043 4.9294 -7.5253 20 6 8.2127 2.4163 -0.9580 21 6 8.4703 1.0369 -0.3484 22 6 9.5271 1.1406 0.6710 23 7 10.3421 1.2209 1.4584 24 6 3.6521 3.4541 1.2221 25 1 4.0035 4.4857 1.2475 26 6 4.2604 2.6774 2.3915 27 6 3.9600 3.4093 3.7011 28 6 2.1254 3.4313 1.3322 29 8 1.6638 2.0821 1.2226 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 3.9980 0.8597 0.6880 36 1 3.8545 1.0095 -1.0802 37 1 5.8657 3.8965 -0.0324 38 1 5.9879 2.1988 0.4887 39 1 8.4692 1.5098 -3.4024 40 1 6.7417 1.4115 -3.8197 41 1 8.3912 2.1677 -7.0246 42 1 9.1281 2.7864 -1.4196 43 1 7.8958 3.1059 -0.1757 44 1 7.5549 0.6669 0.1131 45 1 8.7872 0.3474 -1.1309 46 1 3.8287 1.6772 2.4270 47 1 5.3394 2.6028 2.2562 48 1 2.8861 3.3952 3.8872 49 1 4.4775 2.9126 4.5219 50 1 4.3024 4.4415 3.6273 51 1 1.8237 3.8421 2.2957 52 1 1.6935 4.0300 0.5301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593058478.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:02 Heat of formation + Delta-G solvation = -54.104999 kcal Electronic energy + Delta-G solvation = -30976.592621 eV Core-core repulsion = 26976.314334 eV Total energy + Delta-G solvation = -4000.278287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.48184 -39.00447 -36.91451 -36.18102 -35.24898 -34.25587 -32.95771 -32.66370 -30.87109 -29.36535 -28.97897 -27.16796 -25.12211 -24.63940 -24.00475 -23.18159 -22.44411 -21.31074 -19.20138 -18.50321 -17.65458 -16.95131 -16.60005 -16.44966 -16.25719 -15.73985 -15.47579 -15.05277 -14.75035 -14.54776 -14.28212 -14.22048 -14.04877 -13.71593 -13.60312 -13.45741 -13.27929 -12.89839 -12.65066 -12.47263 -12.35915 -12.26399 -12.09473 -11.88448 -11.84666 -11.78114 -11.53391 -11.30785 -11.27684 -11.04560 -11.03191 -11.00140 -10.89216 -10.74850 -10.64657 -10.25137 -10.19101 -9.70292 -9.61171 -8.97391 -8.48420 -8.21268 -7.82627 -6.09747 -4.13973 2.68056 2.76449 3.27731 3.28793 3.36308 3.38800 3.43789 3.71588 3.85031 4.22018 4.41563 4.64572 4.69535 4.71739 4.90630 4.93143 5.03360 5.07009 5.08791 5.11636 5.16491 5.26215 5.26470 5.28523 5.33542 5.39008 5.41853 5.49208 5.52243 5.57743 5.66678 5.76590 5.78132 5.81231 5.84089 5.90551 5.92480 6.01254 6.02811 6.05034 6.18098 6.24772 6.78057 6.97283 7.02388 7.19723 7.35006 7.43274 7.52748 7.87128 8.15574 8.25969 8.84511 9.00450 9.51818 10.98433 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009160 B = 0.003635 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.972337 B = 7700.365679 C = 9248.743370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.096 3.904 4 H 0.069 0.931 5 C 0.021 3.979 6 N -0.510 5.510 7 C 0.033 3.967 8 C 0.510 3.490 9 O -0.512 6.512 10 N -0.601 5.601 11 C 0.247 3.753 12 C -0.526 4.526 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.894 5.894 16 Si 0.896 3.104 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.118 3.882 21 C -0.050 4.050 22 C 0.216 3.784 23 N -0.444 5.444 24 C 0.047 3.953 25 H 0.091 0.909 26 C -0.156 4.156 27 C -0.147 4.147 28 C 0.071 3.929 29 O -0.380 6.380 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.035 0.965 40 H 0.044 0.956 41 H 0.263 0.737 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.118 0.882 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.052 0.948 50 H 0.053 0.947 51 H 0.096 0.904 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 -1.832 16.887 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.038 3.962 4 H 0.087 0.913 5 C -0.107 4.107 6 N -0.233 5.233 7 C -0.098 4.098 8 C 0.295 3.705 9 O -0.386 6.386 10 N -0.334 5.334 11 C 0.128 3.872 12 C -0.565 4.565 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.009 4.009 21 C -0.092 4.092 22 C -0.102 4.102 23 N -0.122 5.122 24 C -0.062 4.062 25 H 0.109 0.891 26 C -0.195 4.195 27 C -0.205 4.205 28 C -0.006 4.006 29 O -0.299 6.299 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.122 0.878 45 H 0.136 0.864 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.114 0.886 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.337 -1.714 17.143 19.596 hybrid contribution 0.620 0.602 -0.450 0.975 sum -8.716 -1.112 16.692 18.864 Atomic orbital electron populations 1.21689 0.95209 1.01315 1.02235 1.21512 0.96720 0.94334 1.02719 1.22186 0.92971 0.93892 0.87152 0.91302 1.22914 0.95744 0.89106 1.02902 1.62027 1.10867 1.18346 1.32028 1.22151 0.88982 1.02786 0.95878 1.20145 0.82894 0.78344 0.89090 1.90674 1.46971 1.48926 1.52077 1.48229 1.04266 1.70283 1.10589 1.19322 0.96600 0.97039 0.74207 1.21451 1.47443 0.92957 0.94673 0.92362 1.24904 0.95154 0.96474 0.97415 1.69922 1.47611 1.24862 1.10912 0.86471 0.77534 0.83632 0.79957 1.19795 1.21020 1.20885 1.21282 0.94334 0.93283 0.91963 1.19902 0.93200 1.02262 0.93813 1.29108 0.94101 0.93144 0.93822 1.81213 1.10961 1.08652 1.11339 1.22513 0.96882 0.99261 0.87521 0.89082 1.22143 1.00803 1.00972 0.95551 1.21725 1.01718 1.00200 0.96829 1.22620 0.91844 0.84137 1.02001 1.87928 1.76584 1.26118 1.39239 0.92778 0.92934 0.92141 0.91470 0.90302 0.94334 0.88072 0.88182 0.92522 0.94722 0.93779 0.92747 0.88808 0.90852 0.87843 0.86429 0.90942 0.91995 0.92392 0.92904 0.92760 0.88588 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.81 37.16 0.36 -1.01 16 2 C -0.11 -1.18 5.65 -26.73 -0.15 -1.33 16 3 C 0.10 1.16 2.80 -26.68 -0.07 1.08 16 4 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 5 C 0.02 0.28 4.20 -3.71 -0.02 0.26 16 6 N -0.51 -6.79 4.36 -227.77 -0.99 -7.78 16 7 C 0.03 0.43 3.24 -4.97 -0.02 0.42 16 8 C 0.51 9.13 7.18 -10.98 -0.08 9.06 16 9 O -0.51 -11.51 14.40 5.56 0.08 -11.43 16 10 N -0.60 -10.65 2.47 -175.06 -0.43 -11.08 16 11 C 0.25 5.73 5.16 -5.19 -0.03 5.70 16 12 C -0.53 -13.93 9.35 -34.44 -0.32 -14.25 16 13 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -25.33 13.29 55.43 0.74 -24.59 16 16 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.12 1.51 5.05 -4.04 -0.02 1.49 16 21 C -0.05 -0.51 5.98 -29.52 -0.18 -0.69 16 22 C 0.22 2.55 15.43 -20.76 -0.32 2.23 16 23 N -0.44 -6.41 18.54 42.16 0.78 -5.63 16 24 C 0.05 0.50 2.42 -67.61 -0.16 0.33 16 25 H 0.09 0.90 8.08 -51.92 -0.42 0.48 16 26 C -0.16 -1.45 4.63 -26.73 -0.12 -1.57 16 27 C -0.15 -1.14 9.55 37.16 0.35 -0.79 16 28 C 0.07 0.73 6.25 37.21 0.23 0.96 16 29 O -0.38 -4.46 9.37 -35.23 -0.33 -4.79 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 33 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.46 6.52 -51.93 -0.34 0.12 16 36 H 0.10 1.57 6.19 -51.93 -0.32 1.24 16 37 H 0.10 1.21 7.80 -51.93 -0.40 0.81 16 38 H 0.06 0.61 5.69 -51.93 -0.30 0.31 16 39 H 0.03 0.80 8.03 -51.93 -0.42 0.38 16 40 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 43 H 0.07 0.78 6.56 -51.93 -0.34 0.44 16 44 H 0.10 0.88 7.49 -51.93 -0.39 0.49 16 45 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.07 0.76 6.23 -51.93 -0.32 0.44 16 47 H 0.06 0.57 6.42 -51.93 -0.33 0.24 16 48 H 0.06 0.44 6.81 -51.93 -0.35 0.08 16 49 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.10 0.79 6.59 -51.93 -0.34 0.45 16 52 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 LS Contribution 410.66 15.07 6.19 6.19 Total: -1.00 -32.16 410.66 -8.47 -40.62 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.84 Total: -1.19 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -0.64 Total: 3.51 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.09 Total: -49.08 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.25 Total: -16.22 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.16 -8.47 -40.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593058478.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.480 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds