Wall clock time and date at job start Tue Mar 31 2020 20:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46987 * 2 1 4 4 H 1.09000 * 109.50601 * 304.99688 * 3 2 1 5 5 C 1.53104 * 109.50807 * 184.91532 * 3 2 1 6 6 N 1.47006 * 109.25882 * 183.21462 * 5 3 2 7 7 C 1.46906 * 110.99816 * 182.38907 * 6 5 3 8 8 C 1.50703 * 109.47120 * 66.98109 * 7 6 5 9 9 O 1.21280 * 119.99607 * 6.94111 * 8 7 6 10 10 N 1.34776 * 119.99759 * 186.94167 * 8 7 6 11 11 C 1.46504 * 119.99478 * 185.36559 * 10 8 7 12 12 C 1.50701 * 109.47099 * 85.10152 * 11 10 8 13 13 H 1.07999 * 120.00076 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99954 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00267 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00100 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47175 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47106 * 119.99959 * 16 14 12 19 19 H 1.48500 * 109.47093 * 240.00134 * 16 14 12 20 20 C 1.46498 * 120.00203 * 5.36426 * 10 8 7 21 21 C 1.53000 * 109.47010 * 89.99946 * 20 10 8 22 22 C 1.47198 * 109.47098 * 179.97438 * 21 20 10 23 23 N 9.01498 * 167.82022 * 50.06695 * 2 1 3 24 24 C 1.47012 * 110.75413 * 58.61384 * 6 5 3 25 25 H 1.09009 * 109.50708 * 181.44607 * 24 6 5 26 26 C 1.52996 * 109.50700 * 61.32142 * 24 6 5 27 27 C 1.53006 * 109.47123 * 174.22151 * 26 24 6 28 28 C 1.53092 * 109.25965 * 301.38220 * 24 6 5 29 29 O 1.43015 * 109.51161 * 65.08706 * 3 2 1 30 30 H 1.08994 * 109.46845 * 60.00535 * 1 2 3 31 31 H 1.09003 * 109.46844 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47382 * 300.00089 * 1 2 3 33 33 H 1.09008 * 109.46674 * 119.99534 * 2 1 3 34 34 H 1.08997 * 109.46847 * 239.99400 * 2 1 3 35 35 H 1.09003 * 109.50384 * 303.14852 * 5 3 2 36 36 H 1.08995 * 109.50721 * 63.22863 * 5 3 2 37 37 H 1.09000 * 109.46951 * 186.98183 * 7 6 5 38 38 H 1.09000 * 109.46921 * 306.98198 * 7 6 5 39 39 H 1.09002 * 109.47016 * 205.09810 * 11 10 8 40 40 H 1.08992 * 109.47237 * 325.10170 * 11 10 8 41 41 H 0.96998 * 120.00624 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.46949 * 210.00403 * 20 10 8 43 43 H 1.09000 * 109.46838 * 329.99965 * 20 10 8 44 44 H 1.08994 * 109.47080 * 300.00417 * 21 20 10 45 45 H 1.09003 * 109.46578 * 60.00232 * 21 20 10 46 46 H 1.09005 * 109.46853 * 294.21433 * 26 24 6 47 47 H 1.08997 * 109.47890 * 54.21668 * 26 24 6 48 48 H 1.09002 * 109.47258 * 65.70084 * 27 26 24 49 49 H 1.09003 * 109.47176 * 185.69518 * 27 26 24 50 50 H 1.08992 * 109.47145 * 305.69920 * 27 26 24 51 51 H 1.09000 * 109.51109 * 176.78821 * 28 24 6 52 52 H 1.09011 * 109.50727 * 296.87197 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9820 -0.8417 5 6 3.5660 1.4453 -0.1237 6 7 4.0563 2.8290 -0.0456 7 6 5.5144 2.8813 -0.2171 8 6 5.8696 2.4749 -1.6242 9 8 4.9930 2.2937 -2.4425 10 7 7.1613 2.3129 -1.9730 11 6 7.5139 2.0335 -3.3672 12 6 7.6237 3.3302 -4.1272 13 1 7.4480 4.2686 -3.6223 14 6 7.9485 3.3186 -5.4671 15 7 8.1631 2.1760 -6.0819 16 14 8.0839 4.9259 -6.4093 17 1 7.7969 6.0609 -5.4958 18 1 9.4577 5.0650 -6.9560 19 1 7.1043 4.9294 -7.5253 20 6 8.2127 2.4163 -0.9580 21 6 8.4703 1.0369 -0.3484 22 6 9.5271 1.1406 0.6710 23 7 10.3421 1.2209 1.4584 24 6 3.6521 3.4541 1.2221 25 1 4.0035 4.4857 1.2475 26 6 4.2604 2.6774 2.3915 27 6 3.9600 3.4093 3.7011 28 6 2.1254 3.4313 1.3322 29 8 1.6638 2.0821 1.2226 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 3.9980 0.8597 0.6880 36 1 3.8545 1.0095 -1.0802 37 1 5.8657 3.8965 -0.0324 38 1 5.9879 2.1988 0.4887 39 1 8.4692 1.5098 -3.4024 40 1 6.7417 1.4115 -3.8197 41 1 8.3912 2.1677 -7.0246 42 1 9.1281 2.7864 -1.4196 43 1 7.8958 3.1059 -0.1757 44 1 7.5549 0.6669 0.1131 45 1 8.7872 0.3474 -1.1309 46 1 3.8287 1.6772 2.4270 47 1 5.3394 2.6028 2.2562 48 1 2.8861 3.3952 3.8872 49 1 4.4775 2.9126 4.5219 50 1 4.3024 4.4415 3.6273 51 1 1.8237 3.8421 2.2957 52 1 1.6935 4.0300 0.5301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593058478.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:00 Heat of formation + Delta-G solvation = -74.405797 kcal Electronic energy + Delta-G solvation = -30977.472930 eV Core-core repulsion = 26976.314334 eV Total energy + Delta-G solvation = -4001.158596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.50877 -40.28371 -38.00211 -37.14588 -36.60216 -35.17729 -34.82696 -33.51561 -32.16208 -30.54212 -29.86064 -28.70828 -26.31566 -25.44904 -25.26705 -24.34817 -23.68242 -22.22727 -20.16350 -19.77320 -18.81801 -18.32975 -18.08436 -17.53615 -17.30142 -17.03644 -16.45920 -16.29083 -15.99721 -15.68075 -15.56645 -15.31807 -14.90971 -14.70357 -14.62585 -14.43824 -14.33787 -14.13343 -13.89534 -13.58035 -13.53770 -13.37925 -13.23976 -13.00708 -12.92050 -12.78487 -12.67687 -12.54343 -12.51593 -12.42295 -12.16906 -12.11187 -11.88956 -11.86932 -11.83297 -11.62943 -11.55957 -11.11954 -10.65507 -10.57808 -10.32728 -9.44697 -9.14298 -8.16765 -6.28372 1.39219 1.42281 1.52283 1.67018 1.81807 1.93629 2.21405 2.44085 2.79813 2.90312 3.13674 3.16881 3.70461 3.84681 3.91354 3.97295 4.05232 4.08619 4.10807 4.16697 4.24033 4.31242 4.39788 4.46644 4.50221 4.56272 4.58516 4.63181 4.70377 4.78734 4.81879 4.84785 4.88817 5.02522 5.04260 5.06090 5.12562 5.13193 5.18078 5.26234 5.31674 5.36671 5.44950 5.47106 5.63227 5.87784 5.95496 6.08244 6.15435 6.29246 6.58334 6.78071 6.85742 7.37304 7.59287 8.89972 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009160 B = 0.003635 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.972337 B = 7700.365679 C = 9248.743370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C 0.100 3.900 4 H 0.045 0.955 5 C 0.029 3.971 6 N -0.534 5.534 7 C 0.046 3.954 8 C 0.504 3.496 9 O -0.567 6.567 10 N -0.601 5.601 11 C 0.263 3.737 12 C -0.536 4.536 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.956 3.044 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.286 1.286 20 C 0.114 3.886 21 C -0.038 4.038 22 C 0.245 3.755 23 N -0.486 5.486 24 C 0.049 3.951 25 H 0.102 0.898 26 C -0.149 4.149 27 C -0.144 4.144 28 C 0.067 3.933 29 O -0.382 6.382 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.034 0.966 40 H 0.002 0.998 41 H 0.265 0.735 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.130 0.870 45 H 0.120 0.880 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.121 0.879 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.698 -0.972 19.300 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C 0.042 3.958 4 H 0.063 0.937 5 C -0.099 4.099 6 N -0.258 5.258 7 C -0.085 4.085 8 C 0.292 3.708 9 O -0.445 6.445 10 N -0.333 5.333 11 C 0.142 3.858 12 C -0.575 4.575 13 H 0.070 0.930 14 C -0.187 4.187 15 N -0.566 5.566 16 Si 0.781 3.219 17 H -0.193 1.193 18 H -0.199 1.199 19 H -0.212 1.212 20 C -0.011 4.011 21 C -0.079 4.079 22 C -0.072 4.072 23 N -0.164 5.164 24 C -0.059 4.059 25 H 0.120 0.880 26 C -0.188 4.188 27 C -0.201 4.201 28 C -0.010 4.010 29 O -0.301 6.301 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.052 0.948 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.123 0.877 44 H 0.148 0.852 45 H 0.138 0.862 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.081 0.919 51 H 0.139 0.861 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.215 -0.843 19.610 21.684 hybrid contribution 0.550 0.342 -1.206 1.369 sum -8.665 -0.501 18.404 20.348 Atomic orbital electron populations 1.21656 0.94471 1.02137 1.01789 1.21511 0.97350 0.93203 1.03003 1.22096 0.92428 0.94671 0.86655 0.93712 1.22759 0.96283 0.89269 1.01614 1.61955 1.10992 1.18628 1.34225 1.22080 0.89493 1.04299 0.92611 1.21051 0.82047 0.76941 0.90746 1.90654 1.48515 1.51169 1.54191 1.48089 1.05703 1.70029 1.09464 1.18756 0.94918 0.95019 0.77113 1.21778 1.46678 0.93830 0.95238 0.92997 1.25688 0.95089 0.99434 0.98504 1.70022 1.48669 1.26693 1.11221 0.85542 0.77765 0.80072 0.78475 1.19284 1.19880 1.21199 1.21508 0.92619 0.95559 0.91427 1.19818 0.93869 1.00689 0.93511 1.29111 0.93307 0.91834 0.92977 1.81258 1.12276 1.09950 1.12933 1.22583 0.96891 0.99738 0.86663 0.87975 1.22071 1.00814 1.00252 0.95643 1.21700 1.01985 1.00514 0.95950 1.22789 0.91925 0.83381 1.02908 1.87926 1.76725 1.26819 1.38661 0.93365 0.91479 0.92401 0.90607 0.90524 0.92969 0.91152 0.86375 0.89284 0.94791 0.98011 0.92644 0.89670 0.87705 0.85187 0.86186 0.92078 0.91434 0.92188 0.92486 0.91893 0.86137 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.81 71.98 0.71 -1.89 16 2 C -0.11 -2.27 5.65 30.59 0.17 -2.10 16 3 C 0.10 2.40 2.80 30.63 0.09 2.49 16 4 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 5 C 0.03 0.74 4.20 86.32 0.36 1.10 16 6 N -0.53 -13.55 4.36 -874.54 -3.81 -17.36 16 7 C 0.05 1.09 3.24 85.56 0.28 1.37 16 8 C 0.50 17.92 7.18 87.66 0.63 18.55 16 9 O -0.57 -26.44 14.40 -3.03 -0.04 -26.49 16 10 N -0.60 -21.04 2.47 -826.15 -2.04 -23.08 16 11 C 0.26 12.53 5.16 85.63 0.44 12.97 16 12 C -0.54 -28.84 9.35 25.60 0.24 -28.60 16 13 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 14 C 0.01 0.65 5.46 84.65 0.46 1.12 16 15 N -0.93 -53.53 13.29 21.45 0.28 -53.25 16 16 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 C 0.11 2.67 5.05 86.38 0.44 3.10 16 21 C -0.04 -0.67 5.98 28.79 0.17 -0.50 16 22 C 0.25 5.17 15.43 89.44 1.38 6.55 16 23 N -0.49 -13.10 18.54 20.01 0.37 -12.73 16 24 C 0.05 0.92 2.42 44.92 0.11 1.03 16 25 H 0.10 1.69 8.08 -2.38 -0.02 1.67 16 26 C -0.15 -2.28 4.63 30.59 0.14 -2.14 16 27 C -0.14 -1.74 9.55 71.98 0.69 -1.05 16 28 C 0.07 1.26 6.25 72.01 0.45 1.71 16 29 O -0.38 -8.53 9.37 -148.98 -1.40 -9.92 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.07 7.83 -2.39 -0.02 1.05 16 33 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 1.17 6.52 -2.39 -0.02 1.15 16 36 H 0.07 2.26 6.19 -2.39 -0.01 2.24 16 37 H 0.12 2.45 7.80 -2.39 -0.02 2.43 16 38 H 0.09 1.56 5.69 -2.39 -0.01 1.55 16 39 H 0.03 1.61 8.03 -2.39 -0.02 1.59 16 40 H 0.00 0.10 7.50 -2.39 -0.02 0.08 16 41 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 42 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16 43 H 0.10 1.84 6.56 -2.39 -0.02 1.82 16 44 H 0.13 1.71 7.49 -2.39 -0.02 1.69 16 45 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.06 1.10 6.23 -2.38 -0.01 1.09 16 47 H 0.07 0.96 6.42 -2.39 -0.02 0.95 16 48 H 0.06 0.70 6.81 -2.39 -0.02 0.69 16 49 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.12 1.67 6.59 -2.39 -0.02 1.65 16 52 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -72.53 410.66 3.05 -69.48 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.90 Total: 13.88 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 6.75 Total: 13.72 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -5.19 Total: -106.41 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -1.44 Total: -36.41 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -72.53 3.05 -69.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593058478.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.924 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds