Wall clock time and date at job start Tue Mar 31 2020 20:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53003 * 109.46865 * 2 1 4 4 H 1.08993 * 109.50747 * 305.08071 * 3 2 1 5 5 C 1.53097 * 109.50588 * 184.99525 * 3 2 1 6 6 N 1.47006 * 109.26114 * 183.21301 * 5 3 2 7 7 C 1.46900 * 111.00585 * 182.39395 * 6 5 3 8 8 C 1.50700 * 109.47006 * 75.42326 * 7 6 5 9 9 O 1.21277 * 120.00230 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99881 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.50708 * 109.46863 * 270.00090 * 11 10 8 13 13 H 1.07997 * 120.00271 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99747 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00281 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00034 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47591 * 89.99543 * 16 14 12 18 18 H 1.48502 * 109.47034 * 210.00237 * 16 14 12 19 19 H 1.48509 * 109.46822 * 329.99673 * 16 14 12 20 20 C 1.46496 * 120.00308 * 0.02562 * 10 8 7 21 21 C 1.53011 * 109.46972 * 269.99739 * 20 10 8 22 22 C 1.47203 * 109.46934 * 179.97438 * 21 20 10 23 23 N 9.03462 * 165.49906 * 339.87074 * 3 1 2 24 24 C 1.47022 * 110.75056 * 58.61762 * 6 5 3 25 25 H 1.08999 * 109.50366 * 61.32228 * 24 6 5 26 26 C 1.52999 * 109.50364 * 181.44779 * 24 6 5 27 27 C 1.53002 * 109.46829 * 181.74423 * 26 24 6 28 28 C 1.53090 * 109.25695 * 301.38578 * 24 6 5 29 29 O 1.43014 * 109.50749 * 65.21378 * 3 2 1 30 30 H 1.08997 * 109.47050 * 300.00128 * 1 2 3 31 31 H 1.09002 * 109.46673 * 60.00101 * 1 2 3 32 32 H 1.08999 * 109.46756 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47470 * 240.00091 * 2 1 3 34 34 H 1.09004 * 109.46971 * 119.99454 * 2 1 3 35 35 H 1.09005 * 109.50536 * 63.28290 * 5 3 2 36 36 H 1.09000 * 109.50987 * 303.15581 * 5 3 2 37 37 H 1.09008 * 109.46702 * 315.42892 * 7 6 5 38 38 H 1.08993 * 109.47602 * 195.43341 * 7 6 5 39 39 H 1.09003 * 109.47276 * 29.99868 * 11 10 8 40 40 H 1.08994 * 109.47413 * 150.00418 * 11 10 8 41 41 H 0.96991 * 120.00303 * 180.02562 * 15 14 12 42 42 H 1.08999 * 109.47595 * 149.99655 * 20 10 8 43 43 H 1.08997 * 109.47172 * 29.99704 * 20 10 8 44 44 H 1.08997 * 109.46868 * 299.99507 * 21 20 10 45 45 H 1.09003 * 109.46812 * 60.00039 * 21 20 10 46 46 H 1.09000 * 109.47467 * 301.74496 * 26 24 6 47 47 H 1.09005 * 109.47080 * 61.75282 * 26 24 6 48 48 H 1.08999 * 109.47598 * 173.83423 * 27 26 24 49 49 H 1.08998 * 109.47518 * 293.83755 * 27 26 24 50 50 H 1.09004 * 109.46879 * 53.83948 * 27 26 24 51 51 H 1.08998 * 109.50689 * 296.91033 * 28 24 6 52 52 H 1.09001 * 109.54277 * 176.80836 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9825 -0.8407 5 6 3.5658 1.4454 -0.1257 6 7 4.0563 2.8290 -0.0477 7 6 5.5141 2.8815 -0.2212 8 6 5.8545 2.6795 -1.6752 9 8 4.9699 2.5090 -2.4871 10 7 7.1420 2.6882 -2.0734 11 6 7.4730 2.4923 -3.4870 12 6 7.6615 1.0221 -3.7597 13 1 7.5459 0.3054 -2.9602 14 6 7.9805 0.5920 -5.0303 15 7 8.1207 1.4647 -6.0041 16 14 8.2134 -1.2303 -5.3685 17 1 6.9132 -1.8313 -5.7600 18 1 9.1928 -1.4079 -6.4705 19 1 8.7196 -1.9003 -4.1436 20 6 8.2107 2.8935 -1.0926 21 6 8.5066 4.3895 -0.9665 22 6 9.5800 4.5959 0.0195 23 7 10.4081 4.7583 0.7785 24 6 3.6539 3.4536 1.2210 25 1 4.0884 2.8998 2.0532 26 6 4.1471 4.9014 1.2566 27 6 3.7658 5.5373 2.5950 28 6 2.1272 3.4306 1.3331 29 8 1.6664 2.0812 1.2239 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8935 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.8530 1.0109 -1.0833 36 1 3.9989 0.8594 0.6850 37 1 5.9792 2.0953 0.3736 38 1 5.8843 3.8526 0.1072 39 1 6.6622 2.8757 -4.1066 40 1 8.3936 3.0263 -3.7221 41 1 8.3448 1.1622 -6.8980 42 1 9.1098 2.3717 -1.4202 43 1 7.8960 2.5026 -0.1251 44 1 8.8214 4.7804 -1.9340 45 1 7.6074 4.9113 -0.6388 46 1 5.2309 4.9190 1.1417 47 1 3.6863 5.4624 0.4435 48 1 4.2104 6.5300 2.6655 49 1 2.6810 5.6194 2.6623 50 1 4.1344 4.9154 3.4108 51 1 1.6943 4.0291 0.5316 52 1 1.8262 3.8412 2.2970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593058479.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:05 Heat of formation + Delta-G solvation = -54.158140 kcal Electronic energy + Delta-G solvation = -30817.380518 eV Core-core repulsion = 26817.099927 eV Total energy + Delta-G solvation = -4000.280591 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.27944 -38.95055 -36.91119 -36.30887 -35.24679 -34.34487 -33.04855 -32.84244 -30.84935 -29.35691 -28.80701 -27.16982 -25.05269 -25.00119 -24.00900 -22.67918 -22.12875 -21.02978 -20.11016 -18.52629 -17.63333 -17.04254 -16.60596 -16.45885 -16.14145 -15.59213 -15.41989 -14.82079 -14.72996 -14.67918 -14.44061 -14.19361 -14.00675 -13.65088 -13.53612 -13.44849 -13.21224 -12.96133 -12.86642 -12.58572 -12.45187 -12.22665 -12.20167 -11.90475 -11.84323 -11.69120 -11.39531 -11.28792 -11.09370 -11.03377 -11.02526 -10.97194 -10.87253 -10.78901 -10.63733 -10.30386 -10.19676 -9.71833 -9.58780 -8.99749 -8.48457 -8.24799 -7.83341 -6.10042 -4.14732 2.70747 2.78712 3.27923 3.30339 3.34632 3.36494 3.41218 3.71174 3.83829 4.24414 4.40380 4.56506 4.66389 4.75418 4.92164 4.96086 5.03233 5.06276 5.09221 5.14151 5.19365 5.21767 5.25742 5.26533 5.33668 5.35378 5.42455 5.49763 5.50360 5.61399 5.65153 5.78143 5.80256 5.81185 5.83588 5.93406 5.94102 5.99722 6.04704 6.07199 6.16612 6.26953 6.78640 6.96694 7.03508 7.19853 7.36529 7.43698 7.54536 7.86157 8.16406 8.27568 8.84433 9.02145 9.50981 10.98012 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008010 B = 0.004139 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3494.764528 B = 6764.072900 C = 9641.234970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.096 3.904 4 H 0.070 0.930 5 C 0.027 3.973 6 N -0.512 5.512 7 C 0.026 3.974 8 C 0.509 3.491 9 O -0.513 6.513 10 N -0.600 5.600 11 C 0.247 3.753 12 C -0.528 4.528 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.118 3.882 21 C -0.051 4.051 22 C 0.217 3.783 23 N -0.445 5.445 24 C 0.048 3.952 25 H 0.048 0.952 26 C -0.121 4.121 27 C -0.153 4.153 28 C 0.072 3.928 29 O -0.383 6.383 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.036 0.964 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.264 0.736 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.059 0.941 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.837 5.148 15.433 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.038 3.962 4 H 0.088 0.912 5 C -0.101 4.101 6 N -0.237 5.237 7 C -0.105 4.105 8 C 0.295 3.705 9 O -0.387 6.387 10 N -0.333 5.333 11 C 0.128 3.872 12 C -0.567 4.567 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.723 3.277 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.009 4.009 21 C -0.092 4.092 22 C -0.101 4.101 23 N -0.122 5.122 24 C -0.060 4.060 25 H 0.066 0.934 26 C -0.159 4.159 27 C -0.210 4.210 28 C -0.005 4.005 29 O -0.302 6.302 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.136 0.864 45 H 0.123 0.877 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.077 0.923 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.366 5.473 15.651 19.043 hybrid contribution 0.656 -1.359 -0.124 1.514 sum -8.711 4.115 15.527 18.273 Atomic orbital electron populations 1.21690 0.95178 1.01354 1.02195 1.21527 0.96733 0.94275 1.02880 1.22205 0.92952 0.93989 0.87032 0.91177 1.22881 0.95676 0.88611 1.02940 1.61796 1.10925 1.18231 1.32719 1.22258 0.89095 1.02955 0.96176 1.20152 0.82898 0.77925 0.89568 1.90678 1.46298 1.47352 1.54360 1.48227 1.03983 1.70460 1.10642 1.19323 0.96955 0.96819 0.74129 1.21405 1.47902 0.92406 0.94976 0.92502 1.24904 0.95214 0.97822 0.95955 1.69914 1.48090 1.33738 1.01451 0.86543 0.78010 0.85226 0.77907 1.20550 1.21167 1.19970 1.21287 0.93918 0.92081 0.93591 1.19920 0.92812 1.00695 0.95822 1.29081 0.94141 0.93115 0.93798 1.81169 1.11026 1.08781 1.11263 1.22382 0.97121 0.95737 0.90795 0.93440 1.21641 1.01359 0.94376 0.98500 1.21806 1.01617 1.00688 0.96922 1.22677 0.91799 0.83980 1.02063 1.87942 1.76771 1.26237 1.39296 0.92159 0.92774 0.92886 0.90178 0.91402 0.88079 0.94571 0.92227 0.88018 0.93549 0.94821 0.92673 0.88759 0.90963 0.86386 0.87719 0.91402 0.90518 0.92342 0.92438 0.92703 0.92282 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.81 37.16 0.36 -1.10 16 2 C -0.12 -1.30 5.64 -26.72 -0.15 -1.45 16 3 C 0.10 1.23 2.80 -26.68 -0.07 1.15 16 4 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 5 C 0.03 0.38 4.60 -3.72 -0.02 0.36 16 6 N -0.51 -6.96 4.10 -227.78 -0.93 -7.89 16 7 C 0.03 0.34 3.89 -4.98 -0.02 0.33 16 8 C 0.51 9.18 7.42 -10.99 -0.08 9.10 16 9 O -0.51 -11.62 14.70 5.56 0.08 -11.54 16 10 N -0.60 -10.71 2.46 -175.05 -0.43 -11.14 16 11 C 0.25 5.74 5.16 -5.19 -0.03 5.71 16 12 C -0.53 -13.89 9.39 -34.44 -0.32 -14.21 16 13 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 16 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 20 C 0.12 1.53 5.17 -4.04 -0.02 1.51 16 21 C -0.05 -0.52 6.03 -29.51 -0.18 -0.69 16 22 C 0.22 2.55 15.43 -20.79 -0.32 2.23 16 23 N -0.45 -6.40 18.53 42.12 0.78 -5.62 16 24 C 0.05 0.52 2.09 -67.60 -0.14 0.38 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 C -0.12 -1.07 5.27 -26.73 -0.14 -1.21 16 27 C -0.15 -1.07 9.43 37.16 0.35 -0.72 16 28 C 0.07 0.76 5.89 37.20 0.22 0.98 16 29 O -0.38 -4.80 10.02 -35.23 -0.35 -5.15 16 30 H 0.06 0.61 7.83 -51.93 -0.41 0.21 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.70 6.71 -51.93 -0.35 1.35 16 36 H 0.04 0.49 8.13 -51.93 -0.42 0.07 16 37 H 0.06 0.74 7.25 -51.92 -0.38 0.36 16 38 H 0.10 1.08 4.46 -51.93 -0.23 0.85 16 39 H 0.05 1.24 7.42 -51.93 -0.39 0.86 16 40 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 43 H 0.07 0.79 6.44 -51.93 -0.33 0.45 16 44 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.10 0.85 7.22 -51.93 -0.37 0.48 16 46 H 0.07 0.58 5.92 -51.93 -0.31 0.27 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.37 6.89 -51.93 -0.36 0.01 16 50 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 52 H 0.10 0.81 6.80 -51.93 -0.35 0.46 16 LS Contribution 414.32 15.07 6.24 6.24 Total: -1.00 -32.26 414.32 -8.49 -40.74 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -8.93 Total: -1.10 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.66 Total: 3.99 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.15 Total: -49.20 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.27 Total: -16.69 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.26 -8.49 -40.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593058479.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.414 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds